Wall clock time and date at job start Mon Mar 30 2020 00:47:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.46714 * 2 1 4 4 N 1.40507 * 127.03316 * 265.17181 * 3 2 1 5 5 H 0.96999 * 126.60337 * 0.02562 * 4 3 2 6 6 C 1.35085 * 106.79553 * 180.26185 * 4 3 2 7 7 C 1.50705 * 125.30167 * 179.74268 * 6 4 3 8 8 N 1.30726 * 109.40373 * 359.74711 * 6 4 3 9 9 C 1.34314 * 110.10115 * 359.97438 * 8 6 4 10 10 N 1.32761 * 126.11933 * 180.02562 * 9 8 6 11 11 C 1.33926 * 119.99793 * 0.02623 * 10 9 8 12 12 O 1.21823 * 119.99892 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99951 * 179.72638 * 11 10 9 14 14 C 1.46490 * 120.00004 * 180.27760 * 13 11 10 15 15 C 1.52997 * 109.47360 * 179.97438 * 14 13 11 16 16 C 1.50703 * 109.47642 * 179.97438 * 15 14 13 17 17 H 1.08001 * 119.99468 * 0.02562 * 16 15 14 18 18 C 1.37871 * 120.00449 * 179.97438 * 16 15 14 19 19 N 1.31524 * 119.99996 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00399 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46636 * 60.00350 * 20 18 16 22 22 H 1.48498 * 109.47594 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47124 * 300.00586 * 20 18 16 24 24 H 1.09006 * 109.47325 * 299.99883 * 1 2 3 25 25 H 1.09004 * 109.47374 * 59.99870 * 1 2 3 26 26 H 1.09000 * 109.47261 * 180.02562 * 1 2 3 27 27 H 1.08993 * 109.47051 * 240.00158 * 2 1 3 28 28 H 1.08999 * 109.47664 * 119.99760 * 2 1 3 29 29 H 1.09001 * 109.47320 * 269.97864 * 7 6 4 30 30 H 1.09003 * 109.46290 * 29.98004 * 7 6 4 31 31 H 1.08996 * 109.47159 * 149.97494 * 7 6 4 32 32 H 0.97000 * 119.99736 * 0.27027 * 13 11 10 33 33 H 1.09007 * 109.47204 * 299.99306 * 14 13 11 34 34 H 1.09003 * 109.47771 * 59.99365 * 14 13 11 35 35 H 1.09006 * 109.46910 * 299.99536 * 15 14 13 36 36 H 1.09002 * 109.47542 * 59.99386 * 15 14 13 37 37 H 0.96991 * 119.99888 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 7 2.3893 2.1477 -1.1177 5 1 2.3717 1.8641 -2.0451 6 6 2.7801 3.3538 -0.6516 7 6 3.2691 4.4989 -1.5006 8 7 2.6683 3.3732 0.6508 9 6 2.2033 2.1928 1.0917 10 7 1.9701 1.8671 2.3575 11 6 2.2003 2.7572 3.3313 12 8 2.6242 3.8655 3.0557 13 7 1.9584 2.4284 4.6158 14 6 2.2045 3.4040 5.6804 15 6 1.8506 2.7830 7.0331 16 6 2.1044 3.7864 8.1285 17 1 2.4801 4.7691 7.8841 18 6 1.8559 3.4505 9.4424 19 7 1.3979 2.2540 9.7399 20 14 2.1712 4.6940 10.8002 21 1 1.3322 5.8981 10.5730 22 1 1.8276 4.0913 12.1131 23 1 3.6048 5.0812 10.7937 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 4.3507 4.4289 -1.6171 30 1 2.7944 4.4529 -2.4808 31 1 3.0159 5.4429 -1.0183 32 1 1.6211 1.5457 4.8352 33 1 3.2564 3.6896 5.6755 34 1 1.5875 4.2871 5.5139 35 1 0.7985 2.4977 7.0379 36 1 2.4672 1.8998 7.2000 37 1 1.2235 2.0175 10.6643 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888535522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:47:46 Heat of formation + Delta-G solvation = 55.692054 kcal Electronic energy + Delta-G solvation = -19693.195877 eV Core-core repulsion = 16507.659594 eV Total energy + Delta-G solvation = -3185.536283 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.24290 -40.34634 -36.69083 -36.34908 -35.14327 -34.60442 -32.54458 -32.14351 -31.07199 -29.07835 -26.81911 -24.84660 -23.50889 -22.57263 -22.47394 -20.82932 -19.46430 -18.48184 -18.00465 -17.42150 -17.10138 -16.54089 -16.36498 -16.22417 -15.43670 -15.02707 -14.82916 -14.78035 -14.41493 -14.25195 -13.46239 -13.29370 -13.18678 -13.03547 -12.90367 -12.51360 -12.35139 -12.26673 -12.00349 -11.88183 -11.55667 -11.46037 -11.37507 -11.05098 -10.58007 -10.09167 -9.86503 -8.94416 -8.21630 -6.33268 -0.05395 0.14521 1.41692 1.46377 1.54197 1.64645 2.23695 2.44125 2.77079 3.08907 3.11758 3.24925 3.77678 3.88538 4.06231 4.25557 4.35442 4.52825 4.53214 4.55204 4.70454 4.71329 4.84968 4.86700 5.04459 5.09952 5.23716 5.35351 5.50282 5.59581 5.65841 5.85332 6.19151 6.30501 6.51429 6.78804 6.90876 7.11379 7.35549 8.05704 8.90812 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.032517 B = 0.003374 C = 0.003092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.874731 B = 8297.139374 C = 9053.485395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.139 3.861 3 N -0.405 5.405 4 N -0.464 5.464 5 H 0.473 0.527 6 C 0.389 3.611 7 C -0.081 4.081 8 N -0.592 5.592 9 C 0.594 3.406 10 N -0.678 5.678 11 C 0.664 3.336 12 O -0.636 6.636 13 N -0.718 5.718 14 C 0.163 3.837 15 C 0.027 3.973 16 C -0.549 4.549 17 H 0.059 0.941 18 C 0.005 3.995 19 N -0.929 5.929 20 Si 0.973 3.027 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.267 1.267 24 H 0.034 0.966 25 H 0.067 0.933 26 H 0.103 0.897 27 H 0.135 0.865 28 H 0.098 0.902 29 H 0.122 0.878 30 H 0.136 0.864 31 H 0.096 0.904 32 H 0.402 0.598 33 H 0.037 0.963 34 H 0.037 0.963 35 H 0.005 0.995 36 H 0.006 0.994 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.017 -5.007 -33.157 33.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.021 3.979 3 N -0.210 5.210 4 N -0.193 5.193 5 H 0.327 0.673 6 C 0.114 3.886 7 C -0.140 4.140 8 N -0.329 5.329 9 C 0.231 3.769 10 N -0.445 5.445 11 C 0.362 3.638 12 O -0.516 6.516 13 N -0.371 5.371 14 C 0.038 3.962 15 C -0.010 4.010 16 C -0.587 4.587 17 H 0.077 0.923 18 C -0.194 4.194 19 N -0.568 5.568 20 Si 0.796 3.204 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.192 1.192 24 H 0.054 0.946 25 H 0.086 0.914 26 H 0.122 0.878 27 H 0.153 0.847 28 H 0.116 0.884 29 H 0.140 0.860 30 H 0.154 0.846 31 H 0.114 0.886 32 H 0.236 0.764 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.024 0.976 36 H 0.024 0.976 37 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.054 -4.687 -32.268 32.623 hybrid contribution -0.171 -0.185 0.382 0.457 sum 0.884 -4.872 -31.886 32.268 Atomic orbital electron populations 1.22198 0.94039 1.04389 1.01965 1.22179 0.95422 0.73796 1.06531 1.48246 1.63114 1.12146 0.97470 1.45214 1.60754 1.09573 1.03792 0.67260 1.25334 0.85722 0.86667 0.90830 1.20957 1.04220 0.90580 0.98259 1.72111 1.28822 1.22036 1.09946 1.20601 0.85216 0.82627 0.88447 1.68556 1.44375 1.36284 0.95333 1.17086 0.78645 0.84241 0.83845 1.90889 1.51534 1.25416 1.83765 1.44981 1.69786 1.17997 1.04374 1.21023 0.98429 0.90641 0.86083 1.19100 0.95793 0.95911 0.90209 1.21435 1.44804 1.00068 0.92404 0.92270 1.25965 0.94392 0.97635 1.01394 1.70085 1.45569 1.21385 1.19764 0.85395 0.79090 0.78638 0.77271 1.19203 1.20222 1.19202 0.94640 0.91431 0.87809 0.84701 0.88360 0.85957 0.84619 0.88554 0.76388 0.94433 0.94481 0.97624 0.97595 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 10.24 71.98 0.74 -1.27 16 2 C 0.14 1.65 7.20 86.38 0.62 2.27 16 3 N -0.40 -7.83 3.73 -350.39 -1.31 -9.14 16 4 N -0.46 -4.52 7.36 -50.40 -0.37 -4.89 16 5 H 0.47 -0.98 8.96 -213.06 -1.91 -2.89 16 6 C 0.39 6.42 8.17 138.05 1.13 7.55 16 7 C -0.08 -0.39 10.51 71.24 0.75 0.36 16 8 N -0.59 -19.70 9.19 -188.97 -1.74 -21.43 16 9 C 0.59 20.25 8.40 261.09 2.19 22.44 16 10 N -0.68 -28.47 10.50 -328.09 -3.45 -31.91 16 11 C 0.66 33.45 8.47 179.32 1.52 34.97 16 12 O -0.64 -35.76 14.88 -4.74 -0.07 -35.83 16 13 N -0.72 -35.51 5.56 -479.01 -2.66 -38.17 16 14 C 0.16 8.78 5.61 86.38 0.48 9.26 16 15 C 0.03 1.60 5.09 29.85 0.15 1.76 16 16 C -0.55 -33.89 9.11 25.60 0.23 -33.65 16 17 H 0.06 3.56 7.74 -2.91 -0.02 3.54 16 18 C 0.00 0.27 5.46 84.65 0.46 0.74 16 19 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 20 Si 0.97 46.56 29.54 68.60 2.03 48.59 16 21 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 22 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 23 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 24 H 0.03 0.73 8.14 -2.38 -0.02 0.71 16 25 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 29 H 0.12 0.20 8.14 -2.39 -0.02 0.18 16 30 H 0.14 -0.63 8.14 -2.39 -0.02 -0.65 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.40 18.35 8.57 -92.71 -0.79 17.55 16 33 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 34 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.01 0.33 8.14 -2.38 -0.02 0.31 16 36 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -99.11 324.91 -0.61 -99.73 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -1.61 Total: 6.71 kcal Atomic # 6 Polarization: 36.14 SS G_CDS: 8.28 Total: 44.42 kcal Atomic # 7 Polarization: -154.38 SS G_CDS: -9.24 Total: -163.62 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.07 Total: -35.83 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -99.11 -0.61 -99.73 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888535522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.420 kcal (2) G-P(sol) polarization free energy of solvation -99.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -99.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds