Wall clock time and date at job start Mon Mar 30 2020 01:09:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46965 * 270.00055 * 3 2 1 5 5 H 1.48492 * 109.47326 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47075 * 150.00554 * 3 2 1 7 7 C 1.37876 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47112 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00253 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00049 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.62477 * 327.83851 * 14 13 11 16 16 C 1.55064 * 110.56895 * 90.67538 * 14 13 11 17 17 C 1.55088 * 102.12058 * 97.72093 * 16 14 13 18 18 O 1.44644 * 103.66931 * 36.41405 * 17 16 14 19 19 C 1.42631 * 106.72703 * 321.06255 * 18 17 16 20 20 C 1.53901 * 111.29336 * 263.31123 * 19 18 17 21 21 C 1.54442 * 104.11647 * 276.88007 * 20 19 18 22 22 C 1.53947 * 106.64484 * 337.34136 * 21 20 19 23 23 C 1.53895 * 111.31617 * 147.88305 * 19 18 17 24 24 H 0.97007 * 120.00260 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47197 * 60.00260 * 9 7 2 26 26 H 1.09006 * 109.47674 * 299.99844 * 9 7 2 27 27 H 1.09007 * 109.46790 * 60.00314 * 10 9 7 28 28 H 1.08996 * 109.47421 * 300.00510 * 10 9 7 29 29 H 0.97003 * 119.99417 * 0.02562 * 13 11 10 30 30 H 1.08999 * 110.87334 * 339.57062 * 16 14 13 31 31 H 1.08991 * 110.87658 * 215.87603 * 16 14 13 32 32 H 1.08998 * 110.58317 * 277.87077 * 17 16 14 33 33 H 1.08992 * 110.58280 * 154.95905 * 17 16 14 34 34 H 1.08999 * 110.49922 * 158.21983 * 20 19 18 35 35 H 1.08995 * 110.49887 * 35.53708 * 20 19 18 36 36 H 1.09001 * 110.01922 * 218.04565 * 21 20 19 37 37 H 1.09004 * 110.02278 * 96.64067 * 21 20 19 38 38 H 1.09005 * 110.02094 * 119.31060 * 22 21 20 39 39 H 1.09004 * 110.02313 * 240.71338 * 22 21 20 40 40 H 1.08996 * 110.49913 * 324.45202 * 23 19 18 41 41 H 1.08996 * 110.61572 * 201.82427 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0026 13 7 6.2024 -3.8037 -0.0028 14 6 7.6674 -3.8037 -0.0035 15 1 8.0511 -2.9400 -0.5464 16 6 8.2128 -3.8213 1.4480 17 6 8.5180 -5.3266 1.6630 18 8 9.0001 -5.7654 0.3718 19 6 8.2053 -5.1031 -0.6100 20 6 7.0529 -6.0008 -1.0945 21 6 7.6999 -6.8932 -2.1763 22 6 8.9461 -6.1426 -2.6797 23 6 9.0156 -4.8189 -1.8871 24 1 -0.4851 0.8401 0.0004 25 1 3.8751 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6578 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8891 29 1 5.7173 -4.6438 -0.0029 30 1 7.4560 -3.4743 2.1515 31 1 9.1219 -3.2254 1.5285 32 1 7.6115 -5.8660 1.9371 33 1 9.2876 -5.4566 2.4238 34 1 6.2540 -5.3972 -1.5252 35 1 6.6728 -6.6098 -0.2744 36 1 7.0010 -7.0496 -2.9980 37 1 7.9900 -7.8514 -1.7451 38 1 9.8406 -6.7370 -2.4928 39 1 8.8515 -5.9349 -3.7456 40 1 10.0487 -4.5771 -1.6377 41 1 8.5617 -4.0084 -2.4572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890410536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:53 Heat of formation + Delta-G solvation = -95.218925 kcal Electronic energy + Delta-G solvation = -20989.838982 eV Core-core repulsion = 17869.006300 eV Total energy + Delta-G solvation = -3120.832682 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.01898 -38.85199 -36.27630 -34.54613 -33.50016 -31.53496 -30.63799 -29.34104 -28.83152 -26.16151 -24.59171 -22.30339 -21.13645 -20.74128 -19.86483 -19.45737 -17.48839 -16.85737 -16.47431 -15.96421 -15.50933 -15.08919 -14.80353 -14.74523 -14.14043 -13.98376 -13.46609 -13.28476 -12.89056 -12.68947 -12.57287 -12.01994 -11.86613 -11.54255 -11.45322 -11.35596 -11.27934 -11.18998 -10.96983 -10.90611 -10.62474 -10.18609 -10.06858 -9.82479 -9.79597 -9.27348 -9.18892 -8.92171 -8.52091 -6.04384 -4.03293 3.04289 3.30266 3.36766 3.43505 3.54052 3.60836 4.23954 4.32214 4.44957 4.49610 4.65490 4.75200 4.86017 5.02009 5.13436 5.22633 5.31139 5.35446 5.42508 5.44594 5.48863 5.59062 5.64504 5.71289 5.74259 5.80268 5.83558 5.93135 5.99652 6.04825 6.06196 6.14975 6.51508 6.66025 6.80204 7.34147 7.41197 7.68928 7.77619 8.47936 8.60420 8.98515 9.58640 11.08430 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.004104 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.312161 B = 6821.186772 C = 7079.517164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.526 4.526 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.123 4.123 11 C 0.510 3.490 12 O -0.538 6.538 13 N -0.734 5.734 14 C 0.124 3.876 15 H 0.105 0.895 16 C -0.167 4.167 17 C 0.044 3.956 18 O -0.355 6.355 19 C 0.095 3.905 20 C -0.147 4.147 21 C -0.117 4.117 22 C -0.121 4.121 23 C -0.115 4.115 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.401 0.599 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.061 0.939 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.064 0.936 37 H 0.064 0.936 38 H 0.065 0.935 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.524 -14.555 -1.091 23.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.564 4.564 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.163 4.163 11 C 0.299 3.701 12 O -0.413 6.413 13 N -0.390 5.390 14 C 0.018 3.982 15 H 0.123 0.877 16 C -0.206 4.206 17 C -0.032 4.032 18 O -0.274 6.274 19 C 0.054 3.946 20 C -0.185 4.185 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.153 4.153 24 H 0.073 0.927 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.238 0.762 30 H 0.105 0.895 31 H 0.102 0.898 32 H 0.079 0.921 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.095 0.905 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 18.965 -13.813 -1.138 23.490 hybrid contribution -0.069 0.572 0.137 0.592 sum 18.896 -13.241 -1.000 23.095 Atomic orbital electron populations 1.69911 1.06302 1.26985 1.51022 1.24967 0.94697 0.99219 0.94304 0.86798 0.80605 0.83409 0.78755 1.20231 1.21429 1.18561 1.21108 0.89268 0.94567 1.51410 0.90943 1.19364 0.96423 0.90146 0.97657 1.21683 0.87845 1.03366 1.03361 1.21604 0.91610 0.82808 0.74091 1.90651 1.70765 1.31461 1.48443 1.46462 1.05613 1.09546 1.77424 1.21996 0.81782 0.98477 0.95987 0.87728 1.23614 1.02510 0.96985 0.97516 1.23664 0.99647 0.93488 0.86430 1.88784 1.56729 1.67222 1.14621 1.22477 0.91479 0.90683 0.89946 1.22786 0.98008 0.98378 0.99315 1.22081 0.96835 0.98680 0.97895 1.22132 0.98356 0.95931 0.99410 1.22394 1.00760 0.98271 0.93893 0.92703 0.95847 0.96271 0.89592 0.89581 0.76211 0.89511 0.89807 0.92078 0.88888 0.89533 0.90860 0.91714 0.91721 0.91659 0.91748 0.90520 0.90051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.91 13.96 55.43 0.77 -27.14 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.51 27.47 -169.99 -4.67 17.84 16 4 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 6 H -0.26 -6.67 6.54 56.52 0.37 -6.30 16 7 C -0.53 -14.95 9.66 -34.44 -0.33 -15.28 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.32 5.64 -27.88 -0.16 -2.48 16 11 C 0.51 8.97 7.83 -10.98 -0.09 8.88 16 12 O -0.54 -11.57 15.63 5.56 0.09 -11.48 16 13 N -0.73 -9.50 4.28 -52.67 -0.23 -9.73 16 14 C 0.12 1.49 3.01 -66.76 -0.20 1.29 16 15 H 0.10 1.44 7.04 -51.93 -0.37 1.07 16 16 C -0.17 -1.83 6.90 -24.54 -0.17 -2.00 16 17 C 0.04 0.41 7.73 38.26 0.30 0.71 16 18 O -0.35 -3.92 10.97 -35.23 -0.39 -4.31 16 19 C 0.09 0.99 0.88 -89.61 -0.08 0.91 16 20 C -0.15 -1.37 4.64 -25.51 -0.12 -1.49 16 21 C -0.12 -1.01 6.81 -25.48 -0.17 -1.19 16 22 C -0.12 -1.04 6.81 -25.48 -0.17 -1.22 16 23 C -0.12 -1.12 5.85 -25.51 -0.15 -1.27 16 24 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 25 H 0.02 0.60 7.16 -51.93 -0.37 0.23 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 27 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.40 4.24 6.31 -40.82 -0.26 3.98 16 30 H 0.09 1.03 8.06 -51.93 -0.42 0.61 16 31 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.09 0.82 6.50 -51.93 -0.34 0.49 16 35 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.08 0.80 7.91 -51.93 -0.41 0.39 16 LS Contribution 323.97 15.07 4.88 4.88 Total: -1.00 -33.17 323.97 -7.86 -41.03 By element: Atomic # 1 Polarization: 6.91 SS G_CDS: -6.79 Total: 0.12 kcal Atomic # 6 Polarization: -9.69 SS G_CDS: -1.53 Total: -11.22 kcal Atomic # 7 Polarization: -37.41 SS G_CDS: 0.55 Total: -36.87 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.30 Total: -15.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.84 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.17 -7.86 -41.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890410536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.187 kcal (2) G-P(sol) polarization free energy of solvation -33.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds