Wall clock time and date at job start Mon Mar 30 2020 01:09:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86802 * 119.99882 * 2 1 4 4 H 1.48500 * 109.46965 * 270.00055 * 3 2 1 5 5 H 1.48492 * 109.47326 * 30.00051 * 3 2 1 6 6 H 1.48502 * 109.47075 * 150.00554 * 3 2 1 7 7 C 1.37876 * 120.00057 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99919 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00034 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47293 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.47112 * 179.97438 * 10 9 7 12 12 O 1.21274 * 120.00253 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99814 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00049 * 180.02562 * 13 11 10 15 15 H 1.08998 * 110.62477 * 327.83851 * 14 13 11 16 16 C 1.55064 * 110.56895 * 90.67538 * 14 13 11 17 17 C 1.55088 * 102.12058 * 97.72093 * 16 14 13 18 18 O 1.44644 * 103.66931 * 36.41405 * 17 16 14 19 19 C 1.42631 * 106.72703 * 321.06255 * 18 17 16 20 20 C 1.53901 * 111.29336 * 263.31123 * 19 18 17 21 21 C 1.54442 * 104.11647 * 276.88007 * 20 19 18 22 22 C 1.53947 * 106.64484 * 337.34136 * 21 20 19 23 23 C 1.53895 * 111.31617 * 147.88305 * 19 18 17 24 24 H 0.97007 * 120.00260 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.47197 * 60.00260 * 9 7 2 26 26 H 1.09006 * 109.47674 * 299.99844 * 9 7 2 27 27 H 1.09007 * 109.46790 * 60.00314 * 10 9 7 28 28 H 1.08996 * 109.47421 * 300.00510 * 10 9 7 29 29 H 0.97003 * 119.99417 * 0.02562 * 13 11 10 30 30 H 1.08999 * 110.87334 * 339.57062 * 16 14 13 31 31 H 1.08991 * 110.87658 * 215.87603 * 16 14 13 32 32 H 1.08998 * 110.58317 * 277.87077 * 17 16 14 33 33 H 1.08992 * 110.58280 * 154.95905 * 17 16 14 34 34 H 1.08999 * 110.49922 * 158.21983 * 20 19 18 35 35 H 1.08995 * 110.49887 * 35.53708 * 20 19 18 36 36 H 1.09001 * 110.01922 * 218.04565 * 21 20 19 37 37 H 1.09004 * 110.02278 * 96.64067 * 21 20 19 38 38 H 1.09005 * 110.02094 * 119.31060 * 22 21 20 39 39 H 1.09004 * 110.02313 * 240.71338 * 22 21 20 40 40 H 1.08996 * 110.49913 * 324.45202 * 23 19 18 41 41 H 1.08996 * 110.61572 * 201.82427 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0014 9 6 3.5114 -1.1940 -0.0011 10 6 4.0215 -2.6365 -0.0010 11 6 5.5285 -2.6365 -0.0022 12 8 6.1349 -1.5862 -0.0026 13 7 6.2024 -3.8037 -0.0028 14 6 7.6674 -3.8037 -0.0035 15 1 8.0511 -2.9400 -0.5464 16 6 8.2128 -3.8213 1.4480 17 6 8.5180 -5.3266 1.6630 18 8 9.0001 -5.7654 0.3718 19 6 8.2053 -5.1031 -0.6100 20 6 7.0529 -6.0008 -1.0945 21 6 7.6999 -6.8932 -2.1763 22 6 8.9461 -6.1426 -2.6797 23 6 9.0156 -4.8189 -1.8871 24 1 -0.4851 0.8401 0.0004 25 1 3.8751 -0.6804 0.8888 26 1 3.8745 -0.6800 -0.8912 27 1 3.6578 -3.1505 -0.8908 28 1 3.6585 -3.1502 0.8891 29 1 5.7173 -4.6438 -0.0029 30 1 7.4560 -3.4743 2.1515 31 1 9.1219 -3.2254 1.5285 32 1 7.6115 -5.8660 1.9371 33 1 9.2876 -5.4566 2.4238 34 1 6.2540 -5.3972 -1.5252 35 1 6.6728 -6.6098 -0.2744 36 1 7.0010 -7.0496 -2.9980 37 1 7.9900 -7.8514 -1.7451 38 1 9.8406 -6.7370 -2.4928 39 1 8.8515 -5.9349 -3.7456 40 1 10.0487 -4.5771 -1.6377 41 1 8.5617 -4.0084 -2.4572 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890410536.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:52 Heat of formation + Delta-G solvation = -117.098245 kcal Electronic energy + Delta-G solvation = -20990.787741 eV Core-core repulsion = 17869.006300 eV Total energy + Delta-G solvation = -3121.781441 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.95560 -40.17406 -37.01852 -35.78668 -35.47010 -33.39044 -31.79163 -30.11302 -29.68479 -27.92763 -25.48361 -23.71316 -22.34259 -21.78352 -20.91951 -20.53225 -19.24226 -18.13125 -17.58624 -17.16727 -16.55373 -16.23625 -16.14486 -15.88167 -15.65599 -14.98058 -14.74735 -14.52844 -14.37335 -14.23729 -13.59228 -13.40600 -13.08349 -12.87696 -12.67146 -12.30899 -12.16590 -12.08410 -12.04199 -11.99781 -11.95521 -11.77109 -11.72261 -11.40008 -11.29755 -10.79141 -10.77950 -10.58672 -10.08142 -8.31478 -6.34354 1.33154 1.35328 1.49931 1.64706 2.13408 2.34887 2.78969 3.04461 3.41870 3.53831 3.62128 3.85164 3.91567 4.01756 4.10883 4.24469 4.36863 4.41374 4.48827 4.50610 4.67031 4.69816 4.77866 4.81753 4.85072 4.88579 4.95467 4.99593 5.04056 5.05745 5.24337 5.26496 5.32526 5.43155 5.44502 5.50028 5.61171 5.97079 6.23337 6.51049 6.72253 7.26602 7.31224 8.84195 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030718 B = 0.004104 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.312161 B = 6821.186772 C = 7079.517164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.015 3.985 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.529 4.529 8 H 0.051 0.949 9 C 0.005 3.995 10 C -0.118 4.118 11 C 0.517 3.483 12 O -0.581 6.581 13 N -0.710 5.710 14 C 0.118 3.882 15 H 0.086 0.914 16 C -0.167 4.167 17 C 0.047 3.953 18 O -0.364 6.364 19 C 0.099 3.901 20 C -0.148 4.148 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.119 4.119 24 H 0.267 0.733 25 H 0.010 0.990 26 H 0.009 0.991 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.415 0.585 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.072 0.928 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.877 -15.709 -1.085 25.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.183 4.183 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.033 4.033 10 C -0.157 4.157 11 C 0.306 3.694 12 O -0.461 6.461 13 N -0.366 5.366 14 C 0.013 3.987 15 H 0.104 0.896 16 C -0.206 4.206 17 C -0.029 4.029 18 O -0.283 6.283 19 C 0.058 3.942 20 C -0.186 4.186 21 C -0.154 4.154 22 C -0.157 4.157 23 C -0.157 4.157 24 H 0.076 0.924 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.122 0.878 28 H 0.121 0.879 29 H 0.255 0.745 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.090 0.910 33 H 0.130 0.870 34 H 0.103 0.897 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.095 0.905 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 20.329 -15.026 -1.132 25.305 hybrid contribution -0.490 0.847 0.144 0.989 sum 19.840 -14.179 -0.988 24.406 Atomic orbital electron populations 1.70022 1.07789 1.28085 1.52527 1.25787 0.95457 1.02795 0.94271 0.85842 0.79234 0.79582 0.79128 1.19394 1.20403 1.18591 1.21433 0.91257 0.93717 1.50295 0.93110 1.19218 0.93916 0.93762 0.96377 1.21514 0.89114 0.99963 1.05132 1.21220 0.90975 0.83314 0.73936 1.90641 1.71284 1.33215 1.50930 1.46178 1.06255 1.08772 1.75392 1.22095 0.80666 0.98949 0.97014 0.89584 1.23591 1.02275 0.98464 0.96237 1.23766 1.00812 0.92060 0.86240 1.88780 1.57067 1.67229 1.15227 1.22454 0.91950 0.89848 0.89954 1.22806 0.97520 0.98396 0.99902 1.22092 0.96866 0.98558 0.97902 1.22137 0.98569 0.95241 0.99741 1.22424 1.00631 0.98837 0.93770 0.92385 0.97191 0.97303 0.87843 0.87891 0.74472 0.90420 0.89528 0.91035 0.87050 0.89743 0.89947 0.90910 0.91391 0.91429 0.90928 0.90534 0.90520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.84 13.96 21.45 0.30 -58.54 16 2 C 0.01 0.86 5.47 84.65 0.46 1.33 16 3 Si 0.94 46.54 27.47 68.60 1.88 48.43 16 4 H -0.27 -12.92 7.11 99.48 0.71 -12.21 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 6 H -0.26 -12.91 6.54 99.48 0.65 -12.25 16 7 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 8 H 0.05 3.05 7.99 -2.91 -0.02 3.03 16 9 C 0.01 0.26 3.33 29.85 0.10 0.36 16 10 C -0.12 -4.30 5.64 29.85 0.17 -4.14 16 11 C 0.52 17.63 7.83 87.66 0.69 18.32 16 12 O -0.58 -24.88 15.63 -3.01 -0.05 -24.93 16 13 N -0.71 -17.21 4.28 -438.95 -1.88 -19.09 16 14 C 0.12 2.71 3.01 45.75 0.14 2.85 16 15 H 0.09 2.34 7.04 -2.39 -0.02 2.33 16 16 C -0.17 -3.40 6.90 32.02 0.22 -3.18 16 17 C 0.05 0.77 7.73 72.70 0.56 1.33 16 18 O -0.36 -7.19 10.97 -148.98 -1.64 -8.83 16 19 C 0.10 1.87 0.88 -10.14 -0.01 1.86 16 20 C -0.15 -2.41 4.64 31.39 0.15 -2.27 16 21 C -0.12 -1.73 6.81 31.40 0.21 -1.52 16 22 C -0.12 -1.82 6.81 31.40 0.21 -1.61 16 23 C -0.12 -2.14 5.85 31.39 0.18 -1.96 16 24 H 0.27 15.58 8.31 -92.70 -0.77 14.81 16 25 H 0.01 0.50 7.16 -2.39 -0.02 0.49 16 26 H 0.01 0.44 7.53 -2.38 -0.02 0.42 16 27 H 0.10 3.42 8.14 -2.38 -0.02 3.40 16 28 H 0.10 3.41 8.14 -2.39 -0.02 3.40 16 29 H 0.42 7.76 6.31 -92.71 -0.58 7.18 16 30 H 0.08 1.74 8.06 -2.39 -0.02 1.72 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.08 1.40 6.50 -2.39 -0.02 1.39 16 35 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 0.97 8.14 -2.39 -0.02 0.96 16 38 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 39 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.44 7.91 -2.39 -0.02 1.42 16 Total: -1.00 -70.89 323.97 2.32 -68.57 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: 0.37 Total: 13.01 kcal Atomic # 6 Polarization: -21.96 SS G_CDS: 3.33 Total: -18.62 kcal Atomic # 7 Polarization: -76.05 SS G_CDS: -1.58 Total: -77.63 kcal Atomic # 8 Polarization: -32.07 SS G_CDS: -1.68 Total: -33.76 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 1.88 Total: 48.43 kcal Total: -70.89 2.32 -68.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890410536.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.528 kcal (2) G-P(sol) polarization free energy of solvation -70.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds