Wall clock time and date at job start Mon Mar 30 2020 00:56:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46856 * 269.99475 * 3 2 1 5 5 H 1.48495 * 109.47631 * 29.99529 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99950 * 3 2 1 7 7 C 1.37877 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99888 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00076 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47052 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99812 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99779 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99943 * 179.97438 * 14 12 11 16 16 H 1.09002 * 110.56278 * 327.68411 * 15 14 12 17 17 C 1.54803 * 110.60816 * 90.48198 * 15 14 12 18 18 O 1.44429 * 104.79969 * 94.52570 * 17 15 14 19 19 C 1.44426 * 105.27285 * 40.58947 * 18 17 15 20 20 C 1.54475 * 104.80419 * 319.48459 * 19 18 17 21 21 H 1.09008 * 110.51316 * 265.20054 * 20 19 18 22 22 C 1.53002 * 110.51260 * 142.62816 * 20 19 18 23 23 C 1.53002 * 117.49773 * 183.30790 * 22 20 19 24 24 C 1.53000 * 60.02940 * 252.51785 * 23 22 20 25 25 H 0.96996 * 120.00445 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46885 * 60.00520 * 9 7 2 27 27 H 1.09001 * 109.47342 * 300.01087 * 9 7 2 28 28 H 1.08998 * 109.46800 * 60.00704 * 10 9 7 29 29 H 1.08993 * 109.47379 * 300.00444 * 10 9 7 30 30 H 1.08999 * 109.47097 * 60.00074 * 11 10 9 31 31 H 1.08993 * 109.47248 * 300.00349 * 11 10 9 32 32 H 0.96996 * 120.00167 * 359.97438 * 14 12 11 33 33 H 1.09001 * 110.30869 * 335.73292 * 17 15 14 34 34 H 1.08994 * 110.53189 * 213.43994 * 17 15 14 35 35 H 1.09006 * 110.36954 * 200.65306 * 19 18 17 36 36 H 1.08996 * 110.47049 * 78.36676 * 19 18 17 37 37 H 1.09000 * 115.55766 * 328.99106 * 22 20 19 38 38 H 1.09002 * 117.49918 * 145.01819 * 23 22 20 39 39 H 1.09002 * 117.49754 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 41 41 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0539 -4.0573 0.0015 13 8 5.2658 -4.9791 0.0005 14 7 7.3790 -4.3036 0.0029 15 6 7.8674 -5.6848 0.0027 16 1 7.1812 -6.3335 0.5471 17 6 8.0622 -6.1936 -1.4463 18 8 9.4550 -5.9482 -1.7394 19 6 10.1653 -6.2988 -0.5317 20 6 9.2837 -5.7584 0.6158 21 1 9.6195 -4.7674 0.9214 22 6 9.3035 -6.7201 1.8056 23 6 8.4186 -6.3774 3.0058 24 6 9.9373 -6.2217 3.1067 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8913 27 1 3.8752 -0.6803 -0.8887 28 1 3.6586 -3.1501 -0.8893 29 1 3.6578 -3.1506 0.8906 30 1 5.9142 -2.1230 0.8927 31 1 5.9156 -2.1223 -0.8872 32 1 8.0093 -3.5663 0.0040 33 1 7.4259 -5.6346 -2.1323 34 1 7.8430 -7.2594 -1.5098 35 1 11.1447 -5.8205 -0.5153 36 1 10.2709 -7.3807 -0.4520 37 1 9.4275 -7.7740 1.5564 38 1 7.9605 -7.2058 3.5463 39 1 7.8220 -5.4670 2.9476 40 1 10.3400 -5.2087 3.1146 41 1 10.4784 -6.9474 3.7139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891036258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:51 Heat of formation + Delta-G solvation = -75.556547 kcal Electronic energy + Delta-G solvation = -20198.324988 eV Core-core repulsion = 17078.344930 eV Total energy + Delta-G solvation = -3119.980057 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.59367 -38.95423 -37.23989 -34.58290 -34.20402 -32.10571 -30.97134 -29.24522 -27.93592 -24.12245 -23.55619 -22.82053 -22.20250 -20.63440 -20.26897 -19.69244 -17.28758 -16.81777 -16.62704 -16.29485 -15.99287 -15.35244 -15.24720 -14.73255 -14.28571 -14.11406 -13.48353 -13.35830 -12.74387 -12.63627 -12.33184 -12.15817 -11.93701 -11.86568 -11.77588 -11.60616 -11.44250 -10.97322 -10.77975 -10.57848 -10.40334 -10.24808 -10.00724 -9.84066 -9.69546 -9.42518 -9.12497 -9.02398 -8.50282 -5.99976 -3.97747 2.80186 3.09580 3.32248 3.36518 3.39332 3.42120 3.67162 4.14863 4.26018 4.43587 4.47813 4.57134 4.73739 4.80560 4.92859 5.01275 5.05604 5.10541 5.31552 5.33334 5.35609 5.42684 5.54392 5.57214 5.59017 5.60203 5.68179 5.76988 5.84778 6.10318 6.35994 6.50170 6.56579 6.69713 6.92960 7.37959 7.46378 7.50743 7.83494 8.35643 8.60032 9.06775 9.62087 11.13766 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.003389 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.632970 B = 8259.388654 C = 8541.424624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.064 3.936 3 Si 0.881 3.119 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.266 1.266 7 C -0.519 4.519 8 H 0.072 0.928 9 C -0.015 4.015 10 C -0.087 4.087 11 C -0.142 4.142 12 C 0.513 3.487 13 O -0.533 6.533 14 N -0.730 5.730 15 C 0.119 3.881 16 H 0.108 0.892 17 C 0.033 3.967 18 O -0.373 6.373 19 C 0.052 3.948 20 C -0.098 4.098 21 H 0.091 0.909 22 C -0.149 4.149 23 C -0.174 4.174 24 C -0.176 4.176 25 H 0.262 0.738 26 H 0.015 0.985 27 H 0.011 0.989 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.400 0.600 33 H 0.097 0.903 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.109 0.891 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.094 0.906 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.758 -12.293 2.928 27.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.137 4.137 3 Si 0.709 3.291 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.557 4.557 8 H 0.091 0.909 9 C -0.052 4.052 10 C -0.125 4.125 11 C -0.182 4.182 12 C 0.301 3.699 13 O -0.409 6.409 14 N -0.383 5.383 15 C 0.013 3.987 16 H 0.126 0.874 17 C -0.045 4.045 18 O -0.292 6.292 19 C -0.025 4.025 20 C -0.118 4.118 21 H 0.109 0.891 22 C -0.168 4.168 23 C -0.211 4.211 24 C -0.213 4.213 25 H 0.072 0.928 26 H 0.033 0.967 27 H 0.029 0.971 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.234 0.766 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.112 0.888 36 H 0.082 0.918 37 H 0.127 0.873 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.113 0.887 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 24.091 -12.764 2.729 27.400 hybrid contribution 0.604 1.195 0.212 1.356 sum 24.695 -11.569 2.941 27.429 Atomic orbital electron populations 1.69922 1.06311 1.26797 1.51365 1.25054 0.94744 0.99159 0.94706 0.86757 0.80298 0.83639 0.78425 1.20339 1.21448 1.19068 1.21165 0.89536 0.94542 1.50424 0.90939 1.19608 0.97318 0.92176 0.96093 1.21262 0.89170 0.99546 1.02528 1.21879 1.00733 0.91810 1.03738 1.21225 0.81370 0.92715 0.74559 1.90697 1.55135 1.46695 1.48341 1.46174 1.07661 1.07393 1.77083 1.22346 0.95174 0.85172 0.96036 0.87387 1.23995 0.83259 1.00769 0.96457 1.89167 1.18215 1.87564 1.34228 1.23467 0.96100 0.99834 0.83123 1.22417 0.94693 0.99762 0.94897 0.89084 1.22250 1.06432 0.99307 0.88763 1.22981 0.93275 1.03859 1.00970 1.23041 0.96064 1.02514 0.99651 0.92791 0.96687 0.97095 0.92087 0.92095 0.89385 0.89307 0.76554 0.88480 0.91322 0.88825 0.91817 0.87324 0.88535 0.88469 0.88726 0.88702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.48 13.96 55.43 0.77 -27.71 16 2 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.84 27.47 -169.99 -4.67 17.17 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 6 H -0.27 -6.24 6.54 56.52 0.37 -5.87 16 7 C -0.52 -15.20 9.66 -34.44 -0.33 -15.54 16 8 H 0.07 2.31 7.99 -52.49 -0.42 1.89 16 9 C -0.01 -0.35 4.04 -27.89 -0.11 -0.46 16 10 C -0.09 -1.80 4.44 -26.73 -0.12 -1.92 16 11 C -0.14 -2.16 5.70 -27.88 -0.16 -2.32 16 12 C 0.51 7.68 7.83 -10.98 -0.09 7.59 16 13 O -0.53 -10.11 15.63 5.56 0.09 -10.02 16 14 N -0.73 -7.99 5.09 -52.12 -0.27 -8.25 16 15 C 0.12 1.20 2.95 -66.19 -0.20 1.01 16 16 H 0.11 1.27 6.90 -51.93 -0.36 0.92 16 17 C 0.03 0.35 7.37 38.11 0.28 0.63 16 18 O -0.37 -3.98 11.65 -35.23 -0.41 -4.39 16 19 C 0.05 0.39 7.18 37.93 0.27 0.66 16 20 C -0.10 -0.74 3.05 -89.05 -0.27 -1.01 16 21 H 0.09 0.64 7.52 -51.92 -0.39 0.25 16 22 C -0.15 -1.03 5.04 -90.58 -0.46 -1.49 16 23 C -0.17 -1.37 9.75 -26.73 -0.26 -1.63 16 24 C -0.18 -1.12 10.19 -26.70 -0.27 -1.40 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.01 0.35 7.20 -51.92 -0.37 -0.02 16 27 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 28 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 29 H 0.06 1.33 8.10 -51.93 -0.42 0.91 16 30 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.40 3.41 8.38 -40.82 -0.34 3.07 16 33 H 0.10 1.15 8.07 -51.93 -0.42 0.73 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.41 7.65 -51.93 -0.40 0.01 16 37 H 0.11 0.68 7.82 -51.93 -0.41 0.27 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.09 0.58 8.08 -51.92 -0.42 0.16 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 335.91 15.07 5.06 5.06 Total: -1.00 -33.87 335.91 -8.12 -41.99 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -6.89 Total: 0.22 kcal Atomic # 6 Polarization: -12.26 SS G_CDS: -1.81 Total: -14.07 kcal Atomic # 7 Polarization: -36.47 SS G_CDS: 0.51 Total: -35.96 kcal Atomic # 8 Polarization: -14.09 SS G_CDS: -0.32 Total: -14.41 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.67 Total: 17.17 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.87 -8.12 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891036258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.565 kcal (2) G-P(sol) polarization free energy of solvation -33.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds