Wall clock time and date at job start Mon Mar 30 2020 00:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86796 * 119.99746 * 2 1 4 4 H 1.48500 * 109.46856 * 269.99475 * 3 2 1 5 5 H 1.48495 * 109.47631 * 29.99529 * 3 2 1 6 6 H 1.48500 * 109.47063 * 149.99950 * 3 2 1 7 7 C 1.37877 * 120.00016 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99888 * 0.02562 * 7 2 1 9 9 C 1.50698 * 120.00076 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47274 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.47052 * 180.02562 * 10 9 7 12 12 C 1.50705 * 109.46973 * 180.02562 * 11 10 9 13 13 O 1.21281 * 119.99812 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99779 * 180.02562 * 12 11 10 15 15 C 1.46501 * 119.99943 * 179.97438 * 14 12 11 16 16 H 1.09002 * 110.56278 * 327.68411 * 15 14 12 17 17 C 1.54803 * 110.60816 * 90.48198 * 15 14 12 18 18 O 1.44429 * 104.79969 * 94.52570 * 17 15 14 19 19 C 1.44426 * 105.27285 * 40.58947 * 18 17 15 20 20 C 1.54475 * 104.80419 * 319.48459 * 19 18 17 21 21 H 1.09008 * 110.51316 * 265.20054 * 20 19 18 22 22 C 1.53002 * 110.51260 * 142.62816 * 20 19 18 23 23 C 1.53002 * 117.49773 * 183.30790 * 22 20 19 24 24 C 1.53000 * 60.02940 * 252.51785 * 23 22 20 25 25 H 0.96996 * 120.00445 * 0.02562 * 1 2 3 26 26 H 1.09009 * 109.46885 * 60.00520 * 9 7 2 27 27 H 1.09001 * 109.47342 * 300.01087 * 9 7 2 28 28 H 1.08998 * 109.46800 * 60.00704 * 10 9 7 29 29 H 1.08993 * 109.47379 * 300.00444 * 10 9 7 30 30 H 1.08999 * 109.47097 * 60.00074 * 11 10 9 31 31 H 1.08993 * 109.47248 * 300.00349 * 11 10 9 32 32 H 0.96996 * 120.00167 * 359.97438 * 14 12 11 33 33 H 1.09001 * 110.30869 * 335.73292 * 17 15 14 34 34 H 1.08994 * 110.53189 * 213.43994 * 17 15 14 35 35 H 1.09006 * 110.36954 * 200.65306 * 19 18 17 36 36 H 1.08996 * 110.47049 * 78.36676 * 19 18 17 37 37 H 1.09000 * 115.55766 * 328.99106 * 22 20 19 38 38 H 1.09002 * 117.49918 * 145.01819 * 23 22 20 39 39 H 1.09002 * 117.49754 * 0.02562 * 23 22 20 40 40 H 1.09008 * 117.49673 * 107.47884 * 24 23 22 41 41 H 1.08999 * 117.49942 * 252.47315 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0010 11 6 5.5516 -2.6365 0.0022 12 6 6.0539 -4.0573 0.0015 13 8 5.2658 -4.9791 0.0005 14 7 7.3790 -4.3036 0.0029 15 6 7.8674 -5.6848 0.0027 16 1 7.1812 -6.3335 0.5471 17 6 8.0622 -6.1936 -1.4463 18 8 9.4550 -5.9482 -1.7394 19 6 10.1653 -6.2988 -0.5317 20 6 9.2837 -5.7584 0.6158 21 1 9.6195 -4.7674 0.9214 22 6 9.3035 -6.7201 1.8056 23 6 8.4186 -6.3774 3.0058 24 6 9.9373 -6.2217 3.1067 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8913 27 1 3.8752 -0.6803 -0.8887 28 1 3.6586 -3.1501 -0.8893 29 1 3.6578 -3.1506 0.8906 30 1 5.9142 -2.1230 0.8927 31 1 5.9156 -2.1223 -0.8872 32 1 8.0093 -3.5663 0.0040 33 1 7.4259 -5.6346 -2.1323 34 1 7.8430 -7.2594 -1.5098 35 1 11.1447 -5.8205 -0.5153 36 1 10.2709 -7.3807 -0.4520 37 1 9.4275 -7.7740 1.5564 38 1 7.9605 -7.2058 3.5463 39 1 7.8220 -5.4670 2.9476 40 1 10.3400 -5.2087 3.1146 41 1 10.4784 -6.9474 3.7139 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891036258.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:50 Heat of formation + Delta-G solvation = -99.167120 kcal Electronic energy + Delta-G solvation = -20199.348819 eV Core-core repulsion = 17078.344930 eV Total energy + Delta-G solvation = -3121.003889 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.46544 -40.01725 -37.84677 -36.19121 -35.44407 -34.13284 -31.82612 -30.44772 -29.27037 -25.77015 -24.22944 -23.56796 -23.06529 -21.89491 -21.49247 -20.75741 -18.94433 -18.04736 -17.75406 -17.19774 -16.86673 -16.49136 -16.29663 -15.96084 -15.49767 -15.14076 -14.81370 -14.78702 -14.42503 -13.85743 -13.46525 -13.28088 -12.98655 -12.79824 -12.68353 -12.54822 -12.47756 -12.37173 -12.12101 -11.78789 -11.73047 -11.49777 -11.32849 -11.14198 -11.03663 -10.98556 -10.75791 -10.74895 -9.98179 -8.27707 -6.33342 1.38594 1.42012 1.54074 1.63218 2.13127 2.39162 2.76319 2.97032 3.07419 3.52652 3.62013 3.76512 3.88637 3.94369 4.14018 4.17419 4.20207 4.25569 4.32398 4.32584 4.49715 4.61878 4.74820 4.79945 4.80787 4.84729 4.91804 4.96630 4.98135 5.04462 5.04738 5.24642 5.27311 5.44518 5.57194 5.60336 5.68273 5.76026 6.30826 6.53653 6.75512 7.26348 7.31162 8.90046 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029140 B = 0.003389 C = 0.003277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.632970 B = 8259.388654 C = 8541.424624 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.004 4.004 3 Si 0.962 3.038 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.019 0.981 9 C -0.009 4.009 10 C -0.080 4.080 11 C -0.132 4.132 12 C 0.515 3.485 13 O -0.583 6.583 14 N -0.709 5.709 15 C 0.116 3.884 16 H 0.089 0.911 17 C 0.035 3.965 18 O -0.389 6.389 19 C 0.050 3.950 20 C -0.087 4.087 21 H 0.103 0.897 22 C -0.148 4.148 23 C -0.193 4.193 24 C -0.160 4.160 25 H 0.266 0.734 26 H 0.031 0.969 27 H 0.028 0.972 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.117 0.883 31 H 0.116 0.884 32 H 0.416 0.584 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.114 0.886 36 H 0.075 0.925 37 H 0.117 0.883 38 H 0.094 0.906 39 H 0.079 0.921 40 H 0.102 0.898 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.800 -10.879 3.265 30.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.200 4.200 3 Si 0.784 3.216 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.119 4.119 11 C -0.171 4.171 12 C 0.303 3.697 13 O -0.463 6.463 14 N -0.362 5.362 15 C 0.010 3.990 16 H 0.107 0.893 17 C -0.043 4.043 18 O -0.309 6.309 19 C -0.027 4.027 20 C -0.106 4.106 21 H 0.121 0.879 22 C -0.166 4.166 23 C -0.230 4.230 24 C -0.197 4.197 25 H 0.075 0.925 26 H 0.049 0.951 27 H 0.047 0.953 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.135 0.865 31 H 0.134 0.866 32 H 0.254 0.746 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.132 0.868 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.113 0.887 39 H 0.098 0.902 40 H 0.120 0.880 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 28.202 -11.358 3.068 30.557 hybrid contribution -0.716 0.636 0.111 0.964 sum 27.486 -10.722 3.179 29.674 Atomic orbital electron populations 1.70105 1.08694 1.28296 1.52727 1.26201 0.95745 1.04135 0.93872 0.85493 0.79666 0.77073 0.79377 1.18950 1.21183 1.15861 1.21565 0.92733 0.92837 1.50665 0.96234 1.19550 0.93458 0.94385 0.97288 1.21037 0.93466 0.97081 1.00288 1.21727 0.96311 0.92631 1.06445 1.21161 0.82299 0.92083 0.74152 1.90690 1.56661 1.47923 1.50984 1.45949 1.06523 1.08567 1.75156 1.22399 0.96390 0.84110 0.96081 0.89264 1.23900 0.83452 1.00955 0.96007 1.89152 1.18032 1.87833 1.35835 1.23675 0.96413 1.00900 0.81664 1.22356 0.92586 1.00629 0.95035 0.87927 1.22282 1.06056 0.99714 0.88531 1.22945 0.94409 1.03253 1.02412 1.23117 0.94556 1.03224 0.98791 0.92496 0.95115 0.95328 0.94542 0.94473 0.86502 0.86602 0.74650 0.90224 0.90644 0.86825 0.90646 0.86469 0.88713 0.90192 0.87988 0.87483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.14 13.96 21.45 0.30 -61.84 16 2 C 0.00 -0.22 5.47 84.65 0.46 0.24 16 3 Si 0.96 44.09 27.47 68.60 1.88 45.97 16 4 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 7 C -0.54 -32.64 9.66 25.60 0.25 -32.39 16 8 H 0.02 1.32 7.99 -2.91 -0.02 1.30 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.08 -3.35 4.44 30.59 0.14 -3.22 16 11 C -0.13 -3.72 5.70 29.85 0.17 -3.55 16 12 C 0.51 15.00 7.83 87.66 0.69 15.68 16 13 O -0.58 -22.76 15.63 -3.03 -0.05 -22.81 16 14 N -0.71 -14.29 5.09 -437.19 -2.23 -16.52 16 15 C 0.12 2.22 2.95 46.12 0.14 2.36 16 16 H 0.09 2.11 6.90 -2.39 -0.02 2.10 16 17 C 0.03 0.71 7.37 72.60 0.53 1.24 16 18 O -0.39 -7.53 11.65 -148.98 -1.74 -9.27 16 19 C 0.05 0.60 7.18 72.48 0.52 1.12 16 20 C -0.09 -1.09 3.05 -9.78 -0.03 -1.12 16 21 H 0.10 1.07 7.52 -2.38 -0.02 1.06 16 22 C -0.15 -1.72 5.04 -10.77 -0.05 -1.77 16 23 C -0.19 -2.85 9.75 30.60 0.30 -2.55 16 24 C -0.16 -1.62 10.19 30.62 0.31 -1.31 16 25 H 0.27 15.98 8.31 -92.71 -0.77 15.21 16 26 H 0.03 1.35 7.20 -2.38 -0.02 1.33 16 27 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 28 H 0.04 1.65 8.10 -2.39 -0.02 1.63 16 29 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 30 H 0.12 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.12 2.71 8.14 -2.39 -0.02 2.69 16 32 H 0.42 5.79 8.38 -92.71 -0.78 5.01 16 33 H 0.08 1.88 8.07 -2.39 -0.02 1.86 16 34 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.11 0.95 8.14 -2.38 -0.02 0.93 16 36 H 0.08 0.75 7.65 -2.39 -0.02 0.73 16 37 H 0.12 1.18 7.82 -2.39 -0.02 1.16 16 38 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.10 0.90 8.08 -2.38 -0.02 0.88 16 41 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -77.48 335.91 1.89 -75.59 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: 0.17 Total: 14.46 kcal Atomic # 6 Polarization: -29.13 SS G_CDS: 3.54 Total: -25.59 kcal Atomic # 7 Polarization: -76.43 SS G_CDS: -1.93 Total: -78.36 kcal Atomic # 8 Polarization: -30.29 SS G_CDS: -1.78 Total: -32.07 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.97 kcal Total: -77.48 1.89 -75.59 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891036258.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.577 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds