Wall clock time and date at job start Mon Mar 30 2020 00:56:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99730 * 2 1 4 4 H 1.48501 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47201 * 300.00196 * 3 2 1 6 6 H 1.48505 * 109.46889 * 60.00618 * 3 2 1 7 7 C 1.37875 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46727 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47277 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00249 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99925 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.54496 * 32.38404 * 15 14 12 17 17 C 1.54108 * 110.48863 * 269.76917 * 15 14 12 18 18 O 1.43747 * 107.29092 * 239.29518 * 17 15 14 19 19 C 1.44418 * 107.00393 * 26.48856 * 18 17 15 20 20 C 1.54817 * 110.49057 * 155.00214 * 15 14 12 21 21 H 1.09000 * 110.90817 * 216.02954 * 20 15 14 22 22 C 1.53001 * 110.90248 * 339.59658 * 20 15 14 23 23 C 1.53000 * 117.50223 * 297.07381 * 22 20 15 24 24 C 1.52997 * 117.49889 * 228.44642 * 22 20 15 25 25 H 0.97001 * 120.00293 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46726 * 60.00736 * 9 7 2 27 27 H 1.09004 * 109.46858 * 300.00196 * 9 7 2 28 28 H 1.08999 * 109.47722 * 60.00274 * 10 9 7 29 29 H 1.09004 * 109.47155 * 299.99455 * 10 9 7 30 30 H 1.08999 * 109.46895 * 59.99533 * 11 10 9 31 31 H 1.09009 * 109.46632 * 300.00027 * 11 10 9 32 32 H 0.97003 * 120.00280 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.87502 * 358.71500 * 17 15 14 34 34 H 1.08997 * 109.87760 * 119.71933 * 17 15 14 35 35 H 1.08998 * 110.65568 * 201.48604 * 19 18 17 36 36 H 1.08992 * 110.60340 * 78.46945 * 19 18 17 37 37 H 1.09002 * 115.55911 * 82.76071 * 22 20 15 38 38 H 1.08990 * 117.49990 * 145.01974 * 23 22 20 39 39 H 1.09004 * 117.49237 * 359.97438 * 23 22 20 40 40 H 1.08999 * 117.49685 * 0.02562 * 24 22 20 41 41 H 1.08997 * 117.50044 * 214.98097 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4598 -6.1324 -0.0018 13 8 3.6521 -5.9108 -0.0022 14 7 2.0105 -7.4032 -0.0019 15 6 2.9626 -8.5166 -0.0031 16 1 3.8667 -8.2474 0.5429 17 6 3.3075 -8.9298 -1.4471 18 8 2.9338 -10.3097 -1.5975 19 6 1.8720 -10.5651 -0.6525 20 6 2.3162 -9.7829 0.6098 21 1 3.0464 -10.3532 1.1840 22 6 1.1104 -9.4152 1.4768 23 6 1.3662 -8.5503 2.7127 24 6 1.0296 -10.0342 2.8736 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 0.8541 -5.0445 -0.8914 31 1 0.8535 -5.0450 0.8887 32 1 1.0568 -7.5805 -0.0012 33 1 2.7477 -8.3153 -2.1522 34 1 4.3771 -8.8121 -1.6208 35 1 1.7973 -11.6309 -0.4369 36 1 0.9237 -10.1810 -1.0281 37 1 0.1745 -9.2611 0.9397 38 1 0.5988 -7.8273 2.9886 39 1 2.3938 -8.2437 2.9083 40 1 1.8357 -10.7030 3.1750 41 1 0.0406 -10.2873 3.2555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891036261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:59 Heat of formation + Delta-G solvation = -76.879897 kcal Electronic energy + Delta-G solvation = -20374.105719 eV Core-core repulsion = 17254.068277 eV Total energy + Delta-G solvation = -3120.037442 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.65537 -38.81975 -37.24736 -34.45344 -34.09597 -32.07177 -30.84488 -29.16423 -27.54046 -24.03025 -23.60448 -22.76522 -22.30239 -21.02807 -19.81186 -19.71733 -17.32785 -16.71689 -16.37050 -15.98659 -15.84236 -15.39435 -14.91219 -14.73816 -14.41692 -14.27643 -13.59794 -13.28941 -12.83355 -12.34951 -12.28130 -12.15898 -11.79451 -11.76546 -11.70773 -11.35620 -11.25326 -10.82240 -10.60298 -10.54572 -10.51491 -10.27350 -9.95768 -9.70105 -9.68223 -9.27204 -9.06585 -9.00327 -8.32404 -5.97836 -3.99114 2.88324 3.16964 3.33679 3.38165 3.41031 3.46891 3.70828 4.12430 4.31090 4.48088 4.49482 4.63059 4.80515 4.89793 4.94563 5.02229 5.09464 5.16122 5.37500 5.38426 5.39584 5.50615 5.65790 5.67372 5.68011 5.71586 5.76014 5.82790 5.89869 6.25367 6.35832 6.62512 6.72445 6.93025 7.16135 7.57257 7.71199 7.83553 8.02949 8.43051 8.47215 9.08257 9.64996 11.13697 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.003423 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.437519 B = 8177.141653 C = 8664.107139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.056 0.944 9 C 0.020 3.980 10 C -0.094 4.094 11 C -0.138 4.138 12 C 0.514 3.486 13 O -0.537 6.537 14 N -0.725 5.725 15 C 0.120 3.880 16 H 0.103 0.897 17 C 0.035 3.965 18 O -0.377 6.377 19 C 0.053 3.947 20 C -0.099 4.099 21 H 0.096 0.904 22 C -0.150 4.150 23 C -0.166 4.166 24 C -0.177 4.177 25 H 0.259 0.741 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.400 0.600 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.063 0.937 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.005 -23.384 2.475 23.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.133 4.133 11 C -0.178 4.178 12 C 0.302 3.698 13 O -0.413 6.413 14 N -0.379 5.379 15 C 0.013 3.987 16 H 0.121 0.879 17 C -0.043 4.043 18 O -0.295 6.295 19 C -0.024 4.024 20 C -0.118 4.118 21 H 0.114 0.886 22 C -0.169 4.169 23 C -0.203 4.203 24 C -0.214 4.214 25 H 0.069 0.931 26 H 0.034 0.966 27 H 0.034 0.966 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.235 0.765 33 H 0.084 0.916 34 H 0.110 0.890 35 H 0.113 0.887 36 H 0.081 0.919 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.826 -23.235 2.321 23.365 hybrid contribution -0.221 1.005 0.152 1.041 sum 0.605 -22.230 2.473 22.375 Atomic orbital electron populations 1.69970 1.06037 1.26421 1.51328 1.25020 0.94852 0.99257 0.95399 0.86544 0.80251 0.83772 0.77519 1.19674 1.21036 1.21049 1.21313 0.93228 0.91005 1.49979 0.92529 1.19138 0.93977 0.91508 0.97100 1.21442 0.98618 0.91525 1.01670 1.21843 0.98146 0.94104 1.03706 1.21292 0.90411 0.83708 0.74347 1.90677 1.17326 1.84670 1.48629 1.46129 1.09711 1.05155 1.76944 1.22166 0.94135 0.86538 0.95823 0.87903 1.23730 1.01650 0.82737 0.96227 1.88904 1.53871 1.27029 1.59740 1.23613 0.91011 1.00735 0.87000 1.22618 0.96843 0.95774 0.96581 0.88553 1.22035 0.98686 1.06211 0.89920 1.22928 1.03205 0.93485 1.00668 1.23037 1.03017 0.96619 0.98689 0.93135 0.96616 0.96633 0.92721 0.92726 0.89428 0.89385 0.76468 0.91575 0.89034 0.88688 0.91921 0.87421 0.88376 0.88719 0.88834 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.06 13.29 55.43 0.74 -26.32 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.89 22.02 29.54 -169.99 -5.02 16.99 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.52 -14.96 9.11 -34.44 -0.31 -15.27 16 8 H 0.06 1.62 7.74 -52.48 -0.41 1.22 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.09 -2.02 4.44 -26.73 -0.12 -2.14 16 11 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 12 C 0.51 7.85 7.83 -10.99 -0.09 7.76 16 13 O -0.54 -10.34 15.63 5.56 0.09 -10.25 16 14 N -0.73 -7.96 4.00 -52.32 -0.21 -8.17 16 15 C 0.12 1.24 3.12 -66.40 -0.21 1.03 16 16 H 0.10 1.24 7.56 -51.93 -0.39 0.84 16 17 C 0.03 0.38 7.51 37.74 0.28 0.66 16 18 O -0.38 -4.14 11.52 -35.23 -0.41 -4.55 16 19 C 0.05 0.42 7.18 38.21 0.27 0.69 16 20 C -0.10 -0.77 3.26 -88.61 -0.29 -1.06 16 21 H 0.10 0.72 7.98 -51.93 -0.41 0.31 16 22 C -0.15 -1.04 3.70 -90.62 -0.34 -1.38 16 23 C -0.17 -1.34 9.53 -26.73 -0.25 -1.60 16 24 C -0.18 -1.17 10.19 -26.73 -0.27 -1.44 16 25 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 29 H 0.05 1.22 8.10 -51.93 -0.42 0.80 16 30 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 31 H 0.09 1.28 8.14 -51.92 -0.42 0.85 16 32 H 0.40 3.49 7.14 -40.82 -0.29 3.20 16 33 H 0.07 0.77 7.93 -51.93 -0.41 0.35 16 34 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.45 7.92 -51.93 -0.41 0.03 16 37 H 0.11 0.65 7.61 -51.93 -0.40 0.26 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 41 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 LS Contribution 337.05 15.07 5.08 5.08 Total: -1.00 -32.92 337.05 -8.37 -41.29 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.92 Total: -0.84 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -1.71 Total: -13.23 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.53 Total: -34.49 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: -0.32 Total: -14.80 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.92 -8.37 -41.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891036261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.590 kcal (2) G-P(sol) polarization free energy of solvation -32.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds