Wall clock time and date at job start Mon Mar 30 2020 00:56:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99730 * 2 1 4 4 H 1.48501 * 109.46891 * 179.97438 * 3 2 1 5 5 H 1.48494 * 109.47201 * 300.00196 * 3 2 1 6 6 H 1.48505 * 109.46889 * 60.00618 * 3 2 1 7 7 C 1.37875 * 120.00100 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00071 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00098 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.46727 * 180.02562 * 9 7 2 11 11 C 1.53005 * 109.46912 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47277 * 179.97438 * 11 10 9 13 13 O 1.21277 * 120.00249 * 359.97438 * 12 11 10 14 14 N 1.34777 * 119.99925 * 179.97438 * 12 11 10 15 15 C 1.46497 * 119.99948 * 179.97438 * 14 12 11 16 16 H 1.09000 * 110.54496 * 32.38404 * 15 14 12 17 17 C 1.54108 * 110.48863 * 269.76917 * 15 14 12 18 18 O 1.43747 * 107.29092 * 239.29518 * 17 15 14 19 19 C 1.44418 * 107.00393 * 26.48856 * 18 17 15 20 20 C 1.54817 * 110.49057 * 155.00214 * 15 14 12 21 21 H 1.09000 * 110.90817 * 216.02954 * 20 15 14 22 22 C 1.53001 * 110.90248 * 339.59658 * 20 15 14 23 23 C 1.53000 * 117.50223 * 297.07381 * 22 20 15 24 24 C 1.52997 * 117.49889 * 228.44642 * 22 20 15 25 25 H 0.97001 * 120.00293 * 359.97438 * 1 2 3 26 26 H 1.08994 * 109.46726 * 60.00736 * 9 7 2 27 27 H 1.09004 * 109.46858 * 300.00196 * 9 7 2 28 28 H 1.08999 * 109.47722 * 60.00274 * 10 9 7 29 29 H 1.09004 * 109.47155 * 299.99455 * 10 9 7 30 30 H 1.08999 * 109.46895 * 59.99533 * 11 10 9 31 31 H 1.09009 * 109.46632 * 300.00027 * 11 10 9 32 32 H 0.97003 * 120.00280 * 359.97438 * 14 12 11 33 33 H 1.09000 * 109.87502 * 358.71500 * 17 15 14 34 34 H 1.08997 * 109.87760 * 119.71933 * 17 15 14 35 35 H 1.08998 * 110.65568 * 201.48604 * 19 18 17 36 36 H 1.08992 * 110.60340 * 78.46945 * 19 18 17 37 37 H 1.09002 * 115.55911 * 82.76071 * 22 20 15 38 38 H 1.08990 * 117.49990 * 145.01974 * 23 22 20 39 39 H 1.09004 * 117.49237 * 359.97438 * 23 22 20 40 40 H 1.08999 * 117.49685 * 0.02562 * 24 22 20 41 41 H 1.08997 * 117.50044 * 214.98097 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3964 1.2126 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4992 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 6 2.4598 -6.1324 -0.0018 13 8 3.6521 -5.9108 -0.0022 14 7 2.0105 -7.4032 -0.0019 15 6 2.9626 -8.5166 -0.0031 16 1 3.8667 -8.2474 0.5429 17 6 3.3075 -8.9298 -1.4471 18 8 2.9338 -10.3097 -1.5975 19 6 1.8720 -10.5651 -0.6525 20 6 2.3162 -9.7829 0.6098 21 1 3.0464 -10.3532 1.1840 22 6 1.1104 -9.4152 1.4768 23 6 1.3662 -8.5503 2.7127 24 6 1.0296 -10.0342 2.8736 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8903 27 1 0.6247 -2.5571 0.8897 28 1 2.8721 -3.6043 0.8894 29 1 2.8720 -3.6042 -0.8906 30 1 0.8541 -5.0445 -0.8914 31 1 0.8535 -5.0450 0.8887 32 1 1.0568 -7.5805 -0.0012 33 1 2.7477 -8.3153 -2.1522 34 1 4.3771 -8.8121 -1.6208 35 1 1.7973 -11.6309 -0.4369 36 1 0.9237 -10.1810 -1.0281 37 1 0.1745 -9.2611 0.9397 38 1 0.5988 -7.8273 2.9886 39 1 2.3938 -8.2437 2.9083 40 1 1.8357 -10.7030 3.1750 41 1 0.0406 -10.2873 3.2555 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891036261.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:58 Heat of formation + Delta-G solvation = -97.851488 kcal Electronic energy + Delta-G solvation = -20375.015116 eV Core-core repulsion = 17254.068277 eV Total energy + Delta-G solvation = -3120.946839 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.56334 -39.94730 -37.89202 -36.15894 -35.34532 -34.02307 -31.74620 -30.23508 -29.12254 -25.85731 -24.27531 -23.59732 -22.98863 -22.46142 -21.30961 -20.52830 -18.69323 -18.07652 -17.55689 -17.07348 -16.86663 -16.45889 -16.41630 -15.98238 -15.45384 -15.01243 -14.92151 -14.74544 -14.24626 -13.81382 -13.52816 -13.31044 -13.04243 -12.85813 -12.61684 -12.51741 -12.41159 -12.35586 -12.32955 -11.97556 -11.55273 -11.46737 -11.24929 -11.12475 -10.91420 -10.78120 -10.68008 -10.54511 -10.11167 -8.20327 -6.30004 1.39255 1.39762 1.53410 1.65482 2.14011 2.41967 2.74439 2.97388 3.12783 3.47234 3.62910 3.77364 3.92399 3.99480 4.10432 4.21733 4.23649 4.27877 4.30625 4.35464 4.46532 4.72161 4.76238 4.83330 4.85191 4.89345 4.96590 4.98183 5.09119 5.11849 5.20011 5.28799 5.29672 5.42764 5.55152 5.76255 5.81698 5.87617 6.27919 6.54998 6.85688 7.27977 7.38788 8.91321 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.030579 B = 0.003423 C = 0.003231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.437519 B = 8177.141653 C = 8664.107139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.004 3.996 3 Si 0.961 3.039 4 H -0.268 1.268 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.547 4.547 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.082 4.082 11 C -0.130 4.130 12 C 0.519 3.481 13 O -0.582 6.582 14 N -0.701 5.701 15 C 0.118 3.882 16 H 0.084 0.916 17 C 0.037 3.963 18 O -0.393 6.393 19 C 0.050 3.950 20 C -0.087 4.087 21 H 0.101 0.899 22 C -0.146 4.146 23 C -0.184 4.184 24 C -0.163 4.163 25 H 0.264 0.736 26 H 0.001 0.999 27 H 0.002 0.998 28 H 0.040 0.960 29 H 0.039 0.961 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.415 0.585 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.115 0.885 36 H 0.075 0.925 37 H 0.124 0.876 38 H 0.097 0.903 39 H 0.076 0.924 40 H 0.098 0.902 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -24.554 2.674 24.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.194 4.194 3 Si 0.785 3.215 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.120 4.120 11 C -0.170 4.170 12 C 0.308 3.692 13 O -0.462 6.462 14 N -0.355 5.355 15 C 0.012 3.988 16 H 0.103 0.897 17 C -0.041 4.041 18 O -0.312 6.312 19 C -0.025 4.025 20 C -0.106 4.106 21 H 0.120 0.880 22 C -0.164 4.164 23 C -0.221 4.221 24 C -0.200 4.200 25 H 0.073 0.927 26 H 0.019 0.981 27 H 0.020 0.980 28 H 0.059 0.941 29 H 0.058 0.942 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.253 0.747 33 H 0.078 0.922 34 H 0.103 0.897 35 H 0.133 0.867 36 H 0.093 0.907 37 H 0.142 0.858 38 H 0.115 0.885 39 H 0.094 0.906 40 H 0.116 0.884 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.013 -24.452 2.522 24.581 hybrid contribution 0.001 1.314 0.102 1.318 sum -0.012 -23.138 2.624 23.286 Atomic orbital electron populations 1.70066 1.07456 1.27702 1.51686 1.25889 0.95818 1.03011 0.94718 0.85465 0.78897 0.79085 0.78013 1.19279 1.20079 1.20054 1.21723 0.93315 0.92856 1.50569 0.93153 1.19026 0.94212 0.92375 0.95546 1.21153 0.97601 0.93045 1.00215 1.21672 0.97939 0.91661 1.05704 1.21034 0.89359 0.84759 0.74081 1.90669 1.18984 1.85420 1.51121 1.45844 1.10724 1.03977 1.74956 1.22191 0.93632 0.87127 0.95812 0.89744 1.23613 1.01265 0.83056 0.96131 1.88894 1.55000 1.26566 1.60725 1.23836 0.90597 1.02026 0.86086 1.22559 0.97183 0.94105 0.96798 0.88038 1.22083 0.98761 1.05696 0.89889 1.22880 1.02178 0.94712 1.02312 1.23098 1.03789 0.95251 0.97868 0.92673 0.98061 0.98004 0.94147 0.94218 0.87490 0.87331 0.74674 0.92220 0.89697 0.86705 0.90680 0.85807 0.88474 0.90568 0.88374 0.87462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.21 13.29 21.45 0.28 -55.93 16 2 C 0.00 0.21 5.46 84.65 0.46 0.67 16 3 Si 0.96 45.21 29.54 68.60 2.03 47.24 16 4 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 7 C -0.55 -32.17 9.11 25.60 0.23 -31.94 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.34 4.97 29.85 0.15 1.49 16 10 C -0.08 -3.57 4.44 30.60 0.14 -3.44 16 11 C -0.13 -4.07 5.70 29.85 0.17 -3.90 16 12 C 0.52 15.62 7.83 87.66 0.69 16.31 16 13 O -0.58 -22.81 15.63 -3.02 -0.05 -22.86 16 14 N -0.70 -14.48 4.00 -437.84 -1.75 -16.23 16 15 C 0.12 2.35 3.12 45.99 0.14 2.49 16 16 H 0.08 2.05 7.56 -2.39 -0.02 2.03 16 17 C 0.04 0.80 7.51 72.36 0.54 1.34 16 18 O -0.39 -8.02 11.52 -148.98 -1.72 -9.74 16 19 C 0.05 0.65 7.18 72.67 0.52 1.18 16 20 C -0.09 -1.17 3.26 -9.49 -0.03 -1.20 16 21 H 0.10 1.31 7.98 -2.39 -0.02 1.29 16 22 C -0.15 -1.64 3.70 -10.79 -0.04 -1.68 16 23 C -0.18 -2.70 9.53 30.60 0.29 -2.41 16 24 C -0.16 -1.73 10.19 30.60 0.31 -1.41 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 27 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 28 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 29 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.11 2.97 8.14 -2.38 -0.02 2.95 16 32 H 0.42 6.20 7.14 -92.71 -0.66 5.54 16 33 H 0.06 1.34 7.93 -2.39 -0.02 1.32 16 34 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 0.81 7.92 -2.39 -0.02 0.79 16 37 H 0.12 1.04 7.61 -2.39 -0.02 1.02 16 38 H 0.10 1.44 8.14 -2.39 -0.02 1.43 16 39 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 0.97 8.08 -2.39 -0.02 0.95 16 41 H 0.11 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.66 337.05 2.71 -68.95 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: 0.34 Total: 11.07 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 3.58 Total: -22.50 kcal Atomic # 7 Polarization: -70.69 SS G_CDS: -1.47 Total: -72.16 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -1.76 Total: -32.60 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -71.66 2.71 -68.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891036261.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.903 kcal (2) G-P(sol) polarization free energy of solvation -71.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds