Wall clock time and date at job start Mon Mar 30 2020 01:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00218 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00208 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00107 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46953 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.24903 * 60.55712 * 15 14 13 17 17 C 1.55188 * 110.28079 * 182.66274 * 15 14 13 18 18 C 1.54017 * 100.76077 * 154.08112 * 17 15 14 19 19 C 1.52407 * 115.91940 * 96.36198 * 18 17 15 20 20 C 1.54041 * 86.63943 * 93.63947 * 19 18 17 21 21 C 1.52395 * 115.93679 * 198.17847 * 18 17 15 22 22 C 1.53086 * 103.78667 * 327.28769 * 18 17 15 23 23 O 1.43595 * 107.17349 * 19.96911 * 22 18 17 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 0.97006 * 119.99798 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47062 * 299.99546 * 14 13 11 31 31 H 1.08996 * 109.47565 * 60.00082 * 14 13 11 32 32 H 1.09000 * 111.16560 * 271.95935 * 17 15 14 33 33 H 1.09005 * 111.16068 * 36.20995 * 17 15 14 34 34 H 1.08994 * 113.68237 * 208.07648 * 19 18 17 35 35 H 1.08999 * 113.68374 * 339.21135 * 19 18 17 36 36 H 1.08994 * 113.57453 * 269.77275 * 20 19 18 37 37 H 1.08999 * 113.56940 * 139.00946 * 20 19 18 38 38 H 1.08997 * 113.68900 * 20.80719 * 21 18 17 39 39 H 1.08994 * 113.68649 * 151.84578 * 21 18 17 40 40 H 1.09003 * 109.89836 * 260.58151 * 22 18 17 41 41 H 1.08995 * 110.04239 * 139.44033 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 8 0.2789 -4.9671 -0.0030 13 7 2.1655 -6.1344 -0.0024 14 6 1.4330 -7.4030 -0.0035 15 6 2.4272 -8.5660 -0.0031 16 1 3.0537 -8.5264 0.8880 17 6 1.6716 -9.9197 -0.0719 18 6 2.7431 -10.8144 -0.7226 19 6 3.5866 -11.6475 0.2351 20 6 2.5689 -12.7802 0.0024 21 6 2.2401 -12.1111 -1.3456 22 6 3.5020 -9.8602 -1.6484 23 8 3.2418 -8.5255 -1.1871 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 3.1356 -6.1344 -0.0027 30 1 0.8060 -7.4613 0.8862 31 1 0.8067 -7.4603 -0.8937 32 1 1.4129 -10.2771 0.9249 33 1 0.7859 -9.8444 -0.7028 34 1 4.5846 -11.8712 -0.1417 35 1 3.5928 -11.2677 1.2568 36 1 1.7380 -12.7714 0.7076 37 1 3.0274 -13.7639 -0.0997 38 1 1.1759 -12.0999 -1.5808 39 1 2.8538 -12.4659 -2.1735 40 1 3.1456 -9.9750 -2.6722 41 1 4.5712 -10.0668 -1.6026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894404306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:53 Heat of formation + Delta-G solvation = -81.987049 kcal Electronic energy + Delta-G solvation = -19960.743742 eV Core-core repulsion = 16840.484837 eV Total energy + Delta-G solvation = -3120.258905 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.99547 -39.00063 -37.37843 -34.39036 -33.37734 -31.44243 -30.71352 -29.15710 -26.47188 -26.23879 -24.87828 -22.82885 -21.77485 -21.21032 -19.47573 -18.97230 -17.06764 -16.86840 -16.10841 -15.71145 -15.62068 -15.31778 -14.97316 -14.76343 -14.35990 -14.02758 -13.57948 -13.15055 -12.85000 -12.78640 -12.47896 -12.27384 -12.14645 -11.80681 -11.63411 -11.46200 -11.09602 -10.88833 -10.85172 -10.69025 -10.59492 -10.54650 -9.88640 -9.74049 -9.59944 -9.11248 -8.93684 -8.67868 -8.27031 -5.91415 -3.95458 3.31510 3.36695 3.38825 3.42564 3.45506 3.76512 3.90250 4.01983 4.20034 4.36159 4.51660 4.60001 4.77020 4.81348 4.87772 5.12570 5.24216 5.25293 5.35941 5.39562 5.43382 5.44944 5.47497 5.52326 5.59691 5.65514 5.80823 5.82005 5.94120 5.99437 6.31737 6.34151 6.70947 6.86509 6.97869 7.79978 7.93026 8.00947 8.13046 8.44604 8.88095 9.13528 9.67723 11.19627 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.059235 B = 0.002774 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.576615 B =10091.098210 C =10318.916361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.525 4.525 8 H 0.056 0.944 9 C 0.037 3.963 10 C -0.130 4.130 11 C 0.509 3.491 12 O -0.539 6.539 13 N -0.739 5.739 14 C 0.122 3.878 15 C 0.073 3.927 16 H 0.077 0.923 17 C -0.125 4.125 18 C -0.118 4.118 19 C -0.127 4.127 20 C -0.140 4.140 21 C -0.125 4.125 22 C 0.066 3.934 23 O -0.374 6.374 24 H 0.260 0.740 25 H 0.023 0.977 26 H 0.023 0.977 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.401 0.599 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.071 0.929 41 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.992 -27.282 -0.285 28.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.564 4.564 8 H 0.074 0.926 9 C -0.001 4.001 10 C -0.170 4.170 11 C 0.298 3.702 12 O -0.415 6.415 13 N -0.393 5.393 14 C -0.002 4.002 15 C 0.015 3.985 16 H 0.095 0.905 17 C -0.163 4.163 18 C -0.118 4.118 19 C -0.164 4.164 20 C -0.178 4.178 21 C -0.162 4.162 22 C -0.011 4.011 23 O -0.293 6.293 24 H 0.070 0.930 25 H 0.042 0.958 26 H 0.042 0.958 27 H 0.098 0.902 28 H 0.097 0.903 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.103 0.897 40 H 0.089 0.911 41 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.006 -26.961 -0.379 27.859 hybrid contribution 0.876 0.647 0.039 1.089 sum 7.881 -26.314 -0.340 27.471 Atomic orbital electron populations 1.70009 1.06046 1.26503 1.50376 1.25032 0.94834 0.99219 0.95387 0.86586 0.79757 0.83523 0.78044 1.20689 1.21255 1.19904 1.21242 0.92948 0.91051 1.51142 0.92601 1.18899 0.93203 0.89394 0.98589 1.21851 1.00680 0.91940 1.02483 1.21555 0.88611 0.85691 0.74372 1.90657 1.14510 1.87710 1.48585 1.46080 1.10265 1.05198 1.77725 1.21403 0.93787 0.82388 1.02618 1.23271 0.91724 0.94466 0.89054 0.90502 1.22911 0.97870 0.93341 1.02157 1.22470 0.97003 0.94926 0.97423 1.22810 0.97963 0.96170 0.99488 1.22901 0.99357 0.98005 0.97501 1.22709 1.01707 0.94537 0.97283 1.22956 0.99191 0.81399 0.97556 1.88549 1.71069 1.26265 1.43462 0.93002 0.95844 0.95839 0.90229 0.90309 0.76554 0.90667 0.91305 0.89459 0.89468 0.89671 0.90999 0.90034 0.91305 0.90879 0.89693 0.91068 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.98 13.29 55.43 0.74 -27.25 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 4 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 6 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -15.29 9.11 -34.44 -0.31 -15.61 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 1.02 4.26 -27.88 -0.12 0.90 16 10 C -0.13 -2.76 5.64 -27.89 -0.16 -2.92 16 11 C 0.51 10.38 7.83 -10.99 -0.09 10.30 16 12 O -0.54 -13.26 15.98 5.56 0.09 -13.17 16 13 N -0.74 -11.38 5.48 -60.30 -0.33 -11.71 16 14 C 0.12 1.62 5.40 -4.05 -0.02 1.59 16 15 C 0.07 0.73 3.53 -25.57 -0.09 0.64 16 16 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 17 C -0.12 -0.98 5.77 -25.04 -0.14 -1.12 16 18 C -0.12 -0.83 0.94 -154.58 -0.15 -0.97 16 19 C -0.13 -0.75 7.32 -26.49 -0.19 -0.95 16 20 C -0.14 -0.74 7.97 -25.68 -0.20 -0.95 16 21 C -0.12 -0.73 7.41 -26.50 -0.20 -0.92 16 22 C 0.07 0.56 7.31 37.20 0.27 0.84 16 23 O -0.37 -4.33 10.91 -35.23 -0.38 -4.72 16 24 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 25 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 26 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 27 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 28 H 0.08 1.53 8.14 -51.93 -0.42 1.10 16 29 H 0.40 5.25 8.41 -40.82 -0.34 4.91 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.09 0.57 8.06 -51.93 -0.42 0.15 16 33 H 0.09 0.70 8.05 -51.93 -0.42 0.29 16 34 H 0.08 0.46 8.03 -51.93 -0.42 0.04 16 35 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.43 8.12 -51.93 -0.42 0.01 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 41 H 0.07 0.53 7.88 -51.93 -0.41 0.12 16 LS Contribution 336.58 15.07 5.07 5.07 Total: -1.00 -34.82 336.58 -8.37 -43.19 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -7.03 Total: -0.89 kcal Atomic # 6 Polarization: -6.08 SS G_CDS: -1.50 Total: -7.58 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.41 Total: -38.96 kcal Atomic # 8 Polarization: -17.59 SS G_CDS: -0.30 Total: -17.89 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.82 -8.37 -43.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894404306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.794 kcal (2) G-P(sol) polarization free energy of solvation -34.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds