Wall clock time and date at job start Mon Mar 30 2020 01:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86800 * 120.00074 * 2 1 4 4 H 1.48499 * 109.47293 * 269.99846 * 3 2 1 5 5 H 1.48504 * 109.47104 * 30.00092 * 3 2 1 6 6 H 1.48495 * 109.47249 * 149.99839 * 3 2 1 7 7 C 1.37870 * 119.99883 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00310 * 179.97438 * 7 2 1 9 9 C 1.50706 * 120.00176 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.50696 * 109.47055 * 179.97438 * 10 9 7 12 12 O 1.21279 * 120.00218 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00208 * 179.97438 * 11 10 9 14 14 C 1.46496 * 120.00107 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.46953 * 180.02562 * 14 13 11 16 16 H 1.09000 * 110.24903 * 60.55712 * 15 14 13 17 17 C 1.55188 * 110.28079 * 182.66274 * 15 14 13 18 18 C 1.54017 * 100.76077 * 154.08112 * 17 15 14 19 19 C 1.52407 * 115.91940 * 96.36198 * 18 17 15 20 20 C 1.54041 * 86.63943 * 93.63947 * 19 18 17 21 21 C 1.52395 * 115.93679 * 198.17847 * 18 17 15 22 22 C 1.53086 * 103.78667 * 327.28769 * 18 17 15 23 23 O 1.43595 * 107.17349 * 19.96911 * 22 18 17 24 24 H 0.97004 * 119.99507 * 359.97438 * 1 2 3 25 25 H 1.09001 * 109.46953 * 299.99770 * 9 7 2 26 26 H 1.09000 * 109.47318 * 59.99368 * 9 7 2 27 27 H 1.09001 * 109.46832 * 299.99686 * 10 9 7 28 28 H 1.09004 * 109.47261 * 59.99705 * 10 9 7 29 29 H 0.97006 * 119.99798 * 359.97438 * 13 11 10 30 30 H 1.09001 * 109.47062 * 299.99546 * 14 13 11 31 31 H 1.08996 * 109.47565 * 60.00082 * 14 13 11 32 32 H 1.09000 * 111.16560 * 271.95935 * 17 15 14 33 33 H 1.09005 * 111.16068 * 36.20995 * 17 15 14 34 34 H 1.08994 * 113.68237 * 208.07648 * 19 18 17 35 35 H 1.08999 * 113.68374 * 339.21135 * 19 18 17 36 36 H 1.08994 * 113.57453 * 269.77275 * 20 19 18 37 37 H 1.08999 * 113.56940 * 139.00946 * 20 19 18 38 38 H 1.08997 * 113.68900 * 20.80719 * 21 18 17 39 39 H 1.08994 * 113.68649 * 151.84578 * 21 18 17 40 40 H 1.09003 * 109.89836 * 260.58151 * 22 18 17 41 41 H 1.08995 * 110.04239 * 139.44033 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0017 10 6 2.2452 -3.6621 -0.0015 11 6 1.4917 -4.9671 -0.0020 12 8 0.2789 -4.9671 -0.0030 13 7 2.1655 -6.1344 -0.0024 14 6 1.4330 -7.4030 -0.0035 15 6 2.4272 -8.5660 -0.0031 16 1 3.0537 -8.5264 0.8880 17 6 1.6716 -9.9197 -0.0719 18 6 2.7431 -10.8144 -0.7226 19 6 3.5866 -11.6475 0.2351 20 6 2.5689 -12.7802 0.0024 21 6 2.2401 -12.1111 -1.3456 22 6 3.5020 -9.8602 -1.6484 23 8 3.2418 -8.5255 -1.1871 24 1 -0.4849 0.8401 0.0004 25 1 0.6240 -2.5575 0.8880 26 1 0.6246 -2.5563 -0.8919 27 1 2.8725 -3.6039 -0.8910 28 1 2.8713 -3.6047 0.8890 29 1 3.1356 -6.1344 -0.0027 30 1 0.8060 -7.4613 0.8862 31 1 0.8067 -7.4603 -0.8937 32 1 1.4129 -10.2771 0.9249 33 1 0.7859 -9.8444 -0.7028 34 1 4.5846 -11.8712 -0.1417 35 1 3.5928 -11.2677 1.2568 36 1 1.7380 -12.7714 0.7076 37 1 3.0274 -13.7639 -0.0997 38 1 1.1759 -12.0999 -1.5808 39 1 2.8538 -12.4659 -2.1735 40 1 3.1456 -9.9750 -2.6722 41 1 4.5712 -10.0668 -1.6026 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894404306.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:51 Heat of formation + Delta-G solvation = -105.997129 kcal Electronic energy + Delta-G solvation = -19961.784898 eV Core-core repulsion = 16840.484837 eV Total energy + Delta-G solvation = -3121.300060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -41.64692 -40.56326 -38.11959 -35.79857 -35.47834 -33.12010 -31.99571 -29.94464 -28.03785 -26.70996 -26.34681 -23.56941 -23.32563 -22.29258 -21.09503 -19.53439 -18.81617 -17.85789 -17.53570 -17.01974 -16.53509 -16.45288 -16.40739 -16.01200 -15.65505 -15.00935 -14.71057 -14.31447 -14.16982 -14.08175 -13.58593 -13.35788 -13.22882 -13.08445 -12.81430 -12.76169 -12.51215 -12.35315 -12.02624 -11.91689 -11.63658 -11.37268 -11.30370 -11.17877 -11.12567 -10.71037 -10.56825 -10.50669 -10.07839 -8.17711 -6.31890 1.42180 1.45369 1.56322 1.71400 2.21324 2.44592 2.80000 3.15019 3.31603 3.46005 3.64997 3.91645 3.97008 4.00582 4.07453 4.12098 4.24608 4.48261 4.51626 4.55980 4.62375 4.65023 4.76488 4.83416 4.86484 4.89455 4.93227 5.03276 5.09183 5.11474 5.17812 5.34154 5.43908 5.50401 5.53142 5.63499 5.85714 6.02450 6.18160 6.60648 6.86400 7.34081 7.38410 8.95131 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.059235 B = 0.002774 C = 0.002713 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.576615 B =10091.098210 C =10318.916361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.938 5.938 2 C -0.008 4.008 3 Si 0.976 3.024 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.042 3.958 10 C -0.119 4.119 11 C 0.510 3.490 12 O -0.591 6.591 13 N -0.715 5.715 14 C 0.119 3.881 15 C 0.080 3.920 16 H 0.092 0.908 17 C -0.122 4.122 18 C -0.117 4.117 19 C -0.125 4.125 20 C -0.136 4.136 21 C -0.125 4.125 22 C 0.059 3.941 23 O -0.399 6.399 24 H 0.263 0.737 25 H -0.016 1.016 26 H -0.019 1.019 27 H 0.101 0.899 28 H 0.105 0.895 29 H 0.416 0.584 30 H 0.078 0.922 31 H 0.052 0.948 32 H 0.103 0.897 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.083 0.917 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.545 -28.309 0.074 30.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.206 4.206 3 Si 0.799 3.201 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.581 4.581 8 H 0.094 0.906 9 C 0.004 3.996 10 C -0.159 4.159 11 C 0.298 3.702 12 O -0.471 6.471 13 N -0.368 5.368 14 C -0.005 4.005 15 C 0.022 3.978 16 H 0.110 0.890 17 C -0.160 4.160 18 C -0.117 4.117 19 C -0.162 4.162 20 C -0.174 4.174 21 C -0.162 4.162 22 C -0.017 4.017 23 O -0.320 6.320 24 H 0.072 0.928 25 H 0.002 0.998 26 H -0.001 1.001 27 H 0.119 0.881 28 H 0.123 0.877 29 H 0.252 0.748 30 H 0.096 0.904 31 H 0.070 0.930 32 H 0.122 0.878 33 H 0.099 0.901 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.102 0.898 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.110 0.890 40 H 0.088 0.912 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.623 -28.044 -0.022 29.649 hybrid contribution 0.067 0.893 -0.104 0.902 sum 9.690 -27.151 -0.127 28.828 Atomic orbital electron populations 1.70188 1.08325 1.27819 1.51498 1.26166 0.95767 1.04022 0.94623 0.85291 0.78651 0.77587 0.78526 1.19717 1.21069 1.17886 1.21720 0.94001 0.91622 1.50779 0.90630 1.18691 0.93701 0.92458 0.94705 1.21630 0.99334 0.90170 1.04758 1.21345 0.87810 0.86807 0.74210 1.90642 1.16610 1.88441 1.51429 1.45834 1.11017 1.04665 1.75293 1.21577 0.94599 0.82293 1.01991 1.23234 0.91365 0.93916 0.89285 0.89006 1.22911 0.97708 0.92231 1.03141 1.22474 0.96802 0.94895 0.97568 1.22836 0.98275 0.95909 0.99199 1.22892 0.99245 0.98233 0.96989 1.22743 1.01728 0.93809 0.97916 1.23125 1.00115 0.80607 0.97826 1.88508 1.71232 1.28210 1.44006 0.92835 0.99785 1.00062 0.88078 0.87661 0.74778 0.90397 0.92950 0.87839 0.90055 0.89001 0.90868 0.89831 0.90462 0.91080 0.88963 0.91235 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.66 13.29 21.45 0.28 -60.37 16 2 C -0.01 -0.51 5.46 84.65 0.46 -0.04 16 3 Si 0.98 45.12 29.54 68.60 2.03 47.15 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.54 -31.75 9.11 25.60 0.23 -31.52 16 8 H 0.08 4.02 7.74 -2.91 -0.02 4.00 16 9 C 0.04 2.43 4.26 29.85 0.13 2.55 16 10 C -0.12 -5.05 5.64 29.85 0.17 -4.88 16 11 C 0.51 20.98 7.83 87.66 0.69 21.67 16 12 O -0.59 -30.31 15.98 -3.03 -0.05 -30.35 16 13 N -0.72 -21.40 5.48 -463.08 -2.54 -23.94 16 14 C 0.12 3.09 5.40 86.38 0.47 3.55 16 15 C 0.08 1.48 3.53 31.34 0.11 1.59 16 16 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 17 C -0.12 -1.71 5.77 31.69 0.18 -1.53 16 18 C -0.12 -1.41 0.94 -52.23 -0.05 -1.46 16 19 C -0.12 -1.16 7.32 30.75 0.23 -0.94 16 20 C -0.14 -1.11 7.97 31.28 0.25 -0.86 16 21 C -0.12 -1.20 7.41 30.75 0.23 -0.98 16 22 C 0.06 0.93 7.31 72.01 0.53 1.45 16 23 O -0.40 -8.69 10.91 -148.98 -1.63 -10.31 16 24 H 0.26 15.87 8.31 -92.71 -0.77 15.09 16 25 H -0.02 -1.05 8.10 -2.39 -0.02 -1.07 16 26 H -0.02 -1.24 8.10 -2.39 -0.02 -1.26 16 27 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 28 H 0.11 3.89 8.14 -2.38 -0.02 3.87 16 29 H 0.42 10.05 8.41 -92.70 -0.78 9.27 16 30 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 31 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.10 1.12 8.06 -2.39 -0.02 1.10 16 33 H 0.08 1.24 8.05 -2.38 -0.02 1.22 16 34 H 0.09 0.75 8.03 -2.39 -0.02 0.73 16 35 H 0.07 0.68 8.12 -2.39 -0.02 0.66 16 36 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 38 H 0.07 0.72 8.12 -2.39 -0.02 0.70 16 39 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 40 H 0.07 1.08 8.08 -2.39 -0.02 1.06 16 41 H 0.08 1.05 7.88 -2.39 -0.02 1.04 16 Total: -1.00 -77.97 336.58 1.94 -76.03 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: 0.22 Total: 13.18 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: 3.62 Total: -11.38 kcal Atomic # 7 Polarization: -82.06 SS G_CDS: -2.25 Total: -84.31 kcal Atomic # 8 Polarization: -38.99 SS G_CDS: -1.67 Total: -40.67 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.15 kcal Total: -77.97 1.94 -76.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894404306.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.966 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds