Wall clock time and date at job start Mon Mar 30 2020 01:02:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47118 * 270.00438 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00270 * 3 2 1 7 7 C 1.37876 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09005 * 110.32022 * 307.21932 * 15 14 13 17 17 C 1.54756 * 110.36245 * 185.00272 * 15 14 13 18 18 C 1.53468 * 103.62618 * 217.36502 * 17 15 14 19 19 C 1.52649 * 115.83971 * 230.96416 * 18 17 15 20 20 C 1.53989 * 86.73187 * 217.20461 * 19 18 17 21 21 C 1.52658 * 115.81910 * 129.61075 * 18 17 15 22 22 C 1.53433 * 105.21480 * 0.30576 * 18 17 15 23 23 O 1.44511 * 110.35963 * 69.55120 * 15 14 13 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 26 26 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 31 31 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 32 32 H 1.08997 * 110.58980 * 335.89588 * 17 15 14 33 33 H 1.08999 * 110.59639 * 98.67044 * 17 15 14 34 34 H 1.09001 * 113.67139 * 331.66568 * 19 18 17 35 35 H 1.09007 * 113.67302 * 102.74574 * 19 18 17 36 36 H 1.08995 * 113.57850 * 269.97773 * 20 19 18 37 37 H 1.09004 * 113.64553 * 139.19497 * 20 19 18 38 38 H 1.08995 * 113.66875 * 257.26560 * 21 18 17 39 39 H 1.08993 * 113.67505 * 28.35503 * 21 18 17 40 40 H 1.08989 * 110.42470 * 141.95493 * 22 18 17 41 41 H 1.08998 * 110.42074 * 264.32018 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1349 -1.5861 -0.0015 13 7 6.2024 -3.8037 -0.0065 14 6 7.6674 -3.8036 -0.0125 15 6 8.1774 -5.2461 -0.0174 16 1 7.7240 -5.8107 0.7974 17 6 9.7201 -5.2722 0.1027 18 6 10.1342 -6.4349 -0.8094 19 6 11.0690 -7.4686 -0.1868 20 6 11.7540 -7.5487 -1.5636 21 6 11.2299 -6.1247 -1.8261 22 6 8.8216 -6.9812 -1.3864 23 8 7.8936 -5.8754 -1.2870 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8908 28 1 3.6585 -3.1502 0.8892 29 1 5.7174 -4.6437 -0.0064 30 1 8.0271 -3.2878 -0.9028 31 1 8.0344 -3.2919 0.8772 32 1 10.1482 -4.3349 -0.2528 33 1 10.0213 -5.4636 1.1326 34 1 11.7088 -7.0639 0.5975 35 1 10.5680 -8.3910 0.1071 36 1 11.3212 -8.3011 -2.2228 37 1 12.8409 -7.6099 -1.5082 38 1 10.8571 -5.9756 -2.8394 39 1 11.9151 -5.3402 -1.5054 40 1 8.9561 -7.2724 -2.4280 41 1 8.4708 -7.8286 -0.7974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000894404307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:02:02 Heat of formation + Delta-G solvation = -79.003913 kcal Electronic energy + Delta-G solvation = -19989.182534 eV Core-core repulsion = 16869.052987 eV Total energy + Delta-G solvation = -3120.129546 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.97034 -39.15464 -37.41647 -34.50775 -33.42001 -31.62139 -31.05240 -28.99541 -26.60589 -26.23815 -25.07574 -23.04333 -21.55320 -21.12575 -19.54198 -19.06585 -17.20800 -16.71942 -16.35330 -15.92145 -15.76918 -15.51204 -14.95062 -14.77915 -14.14724 -14.01607 -13.68136 -13.27309 -13.09957 -12.89982 -12.52784 -12.32719 -12.19376 -11.93984 -11.74949 -11.39108 -11.35089 -10.92150 -10.87146 -10.65044 -10.59722 -10.11065 -10.02115 -9.98896 -9.74179 -9.18702 -9.11244 -8.81272 -8.46743 -5.99234 -3.97607 3.19188 3.39161 3.41224 3.47376 3.58886 3.60629 3.93670 4.03885 4.23882 4.37399 4.54655 4.55912 4.65691 4.81325 4.89807 5.10282 5.17015 5.26786 5.29906 5.36247 5.36305 5.40006 5.45485 5.50676 5.54947 5.61450 5.65265 5.83346 5.89701 5.94919 6.15016 6.17113 6.51501 6.68052 6.76443 7.41967 7.48917 7.81572 7.86929 8.54728 8.72537 9.04238 9.64001 11.13658 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.055046 B = 0.002920 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.546808 B = 9585.713198 C = 9827.658958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.122 4.122 11 C 0.510 3.490 12 O -0.544 6.544 13 N -0.738 5.738 14 C 0.127 3.873 15 C 0.064 3.936 16 H 0.076 0.924 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.126 4.126 20 C -0.143 4.143 21 C -0.125 4.125 22 C 0.068 3.932 23 O -0.364 6.364 24 H 0.263 0.737 25 H 0.023 0.977 26 H 0.019 0.981 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.401 0.599 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.072 0.928 39 H 0.084 0.916 40 H 0.092 0.908 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.327 -18.143 -0.590 30.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.215 1.215 6 H -0.185 1.185 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.162 4.162 11 C 0.299 3.701 12 O -0.420 6.420 13 N -0.392 5.392 14 C 0.002 3.998 15 C 0.006 3.994 16 H 0.094 0.906 17 C -0.172 4.172 18 C -0.118 4.118 19 C -0.164 4.164 20 C -0.180 4.180 21 C -0.163 4.163 22 C -0.008 4.008 23 O -0.283 6.283 24 H 0.072 0.928 25 H 0.042 0.958 26 H 0.037 0.963 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.235 0.765 30 H 0.090 0.910 31 H 0.095 0.905 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.103 0.897 35 H 0.089 0.911 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.110 0.890 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 24.446 -17.174 -0.744 29.885 hybrid contribution 0.311 0.336 0.123 0.475 sum 24.757 -16.837 -0.621 29.946 Atomic orbital electron populations 1.69916 1.06287 1.26921 1.51231 1.24979 0.94718 0.99242 0.94383 0.86785 0.80607 0.83361 0.78740 1.20252 1.21488 1.18525 1.21130 0.89326 0.94557 1.51143 0.90932 1.19369 0.96354 0.90300 0.97637 1.21660 0.87993 1.03188 1.03343 1.21530 0.91603 0.82725 0.74281 1.90645 1.70876 1.31502 1.48997 1.46091 1.06204 1.09425 1.77500 1.21325 0.81666 0.93953 1.02810 1.23318 0.94885 0.93933 0.87279 0.90631 1.22805 0.94854 0.99142 1.00419 1.22498 0.95455 0.96454 0.97351 1.22835 0.97849 0.98575 0.97106 1.22917 1.00488 0.97405 0.97240 1.22839 0.97040 0.97262 0.99137 1.23073 0.86415 0.89720 1.01637 1.89268 1.57370 1.44475 1.37158 0.92761 0.95849 0.96280 0.89584 0.89647 0.76486 0.90975 0.90489 0.89894 0.89949 0.89686 0.91128 0.90120 0.91319 0.90963 0.89740 0.88957 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.45 13.96 55.43 0.77 -27.68 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 23.00 27.47 -169.99 -4.67 18.33 16 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 5 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 6 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 7 C -0.52 -15.31 9.66 -34.44 -0.33 -15.64 16 8 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 9 C 0.00 0.03 3.33 -27.88 -0.09 -0.06 16 10 C -0.12 -2.46 5.64 -27.88 -0.16 -2.62 16 11 C 0.51 9.75 7.83 -10.98 -0.09 9.66 16 12 O -0.54 -12.50 15.98 5.55 0.09 -12.41 16 13 N -0.74 -10.64 5.56 -60.30 -0.33 -10.98 16 14 C 0.13 1.58 5.28 -4.04 -0.02 1.56 16 15 C 0.06 0.61 3.34 -25.81 -0.09 0.52 16 16 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 17 C -0.13 -1.02 6.14 -25.56 -0.16 -1.18 16 18 C -0.12 -0.81 1.17 -154.41 -0.18 -0.99 16 19 C -0.13 -0.69 7.30 -26.40 -0.19 -0.88 16 20 C -0.14 -0.76 7.95 -25.71 -0.20 -0.96 16 21 C -0.13 -0.81 7.22 -26.39 -0.19 -1.00 16 22 C 0.07 0.54 6.90 37.38 0.26 0.80 16 23 O -0.36 -4.04 11.35 -35.23 -0.40 -4.44 16 24 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 25 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 26 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 27 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 28 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 29 H 0.40 4.82 8.47 -40.82 -0.35 4.48 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 0.66 7.71 -51.93 -0.40 0.26 16 33 H 0.08 0.52 7.97 -51.93 -0.41 0.11 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.05 -51.93 -0.42 -0.06 16 36 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.50 8.05 -51.93 -0.42 0.08 16 39 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.67 7.91 -51.94 -0.41 0.26 16 41 H 0.06 0.44 8.04 -51.93 -0.42 0.02 16 LS Contribution 332.77 15.07 5.01 5.01 Total: -1.00 -34.75 332.77 -8.05 -42.79 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.98 Total: -1.80 kcal Atomic # 6 Polarization: -7.29 SS G_CDS: -1.54 Total: -8.83 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.44 Total: -38.66 kcal Atomic # 8 Polarization: -16.54 SS G_CDS: -0.31 Total: -16.85 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -4.67 Total: 18.33 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.75 -8.05 -42.79 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894404307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.211 kcal (2) G-P(sol) polarization free energy of solvation -34.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds