Wall clock time and date at job start Mon Mar 30 2020 01:01:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48498 * 109.47118 * 270.00438 * 3 2 1 5 5 H 1.48507 * 109.46904 * 30.00095 * 3 2 1 6 6 H 1.48494 * 109.47201 * 150.00270 * 3 2 1 7 7 C 1.37876 * 119.99854 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00510 * 0.02562 * 7 2 1 9 9 C 1.50700 * 119.99720 * 179.97438 * 7 2 1 10 10 C 1.53004 * 109.47208 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47208 * 180.02562 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27843 * 11 10 9 14 14 C 1.46497 * 119.99525 * 179.72583 * 13 11 10 15 15 C 1.52999 * 109.46992 * 179.97438 * 14 13 11 16 16 H 1.09005 * 110.32022 * 307.21932 * 15 14 13 17 17 C 1.54756 * 110.36245 * 185.00272 * 15 14 13 18 18 C 1.53468 * 103.62618 * 217.36502 * 17 15 14 19 19 C 1.52649 * 115.83971 * 230.96416 * 18 17 15 20 20 C 1.53989 * 86.73187 * 217.20461 * 19 18 17 21 21 C 1.52658 * 115.81910 * 129.61075 * 18 17 15 22 22 C 1.53433 * 105.21480 * 0.30576 * 18 17 15 23 23 O 1.44511 * 110.35963 * 69.55120 * 15 14 13 24 24 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.47500 * 59.99948 * 9 7 2 26 26 H 1.08998 * 109.47585 * 299.99943 * 9 7 2 27 27 H 1.09009 * 109.46730 * 59.99906 * 10 9 7 28 28 H 1.08998 * 109.46846 * 300.00451 * 10 9 7 29 29 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 30 30 H 1.08995 * 109.47421 * 299.99467 * 14 13 11 31 31 H 1.09001 * 109.47621 * 60.00103 * 14 13 11 32 32 H 1.08997 * 110.58980 * 335.89588 * 17 15 14 33 33 H 1.08999 * 110.59639 * 98.67044 * 17 15 14 34 34 H 1.09001 * 113.67139 * 331.66568 * 19 18 17 35 35 H 1.09007 * 113.67302 * 102.74574 * 19 18 17 36 36 H 1.08995 * 113.57850 * 269.97773 * 20 19 18 37 37 H 1.09004 * 113.64553 * 139.19497 * 20 19 18 38 38 H 1.08995 * 113.66875 * 257.26560 * 21 18 17 39 39 H 1.08993 * 113.67505 * 28.35503 * 21 18 17 40 40 H 1.08989 * 110.42470 * 141.95493 * 22 18 17 41 41 H 1.08998 * 110.42074 * 264.32018 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 6 4.0216 -2.6365 -0.0010 11 6 5.5286 -2.6365 -0.0009 12 8 6.1349 -1.5861 -0.0015 13 7 6.2024 -3.8037 -0.0065 14 6 7.6674 -3.8036 -0.0125 15 6 8.1774 -5.2461 -0.0174 16 1 7.7240 -5.8107 0.7974 17 6 9.7201 -5.2722 0.1027 18 6 10.1342 -6.4349 -0.8094 19 6 11.0690 -7.4686 -0.1868 20 6 11.7540 -7.5487 -1.5636 21 6 11.2299 -6.1247 -1.8261 22 6 8.8216 -6.9812 -1.3864 23 8 7.8936 -5.8754 -1.2870 24 1 -0.4850 0.8400 0.0004 25 1 3.8753 -0.6804 0.8888 26 1 3.8746 -0.6800 -0.8911 27 1 3.6579 -3.1506 -0.8908 28 1 3.6585 -3.1502 0.8892 29 1 5.7174 -4.6437 -0.0064 30 1 8.0271 -3.2878 -0.9028 31 1 8.0344 -3.2919 0.8772 32 1 10.1482 -4.3349 -0.2528 33 1 10.0213 -5.4636 1.1326 34 1 11.7088 -7.0639 0.5975 35 1 10.5680 -8.3910 0.1071 36 1 11.3212 -8.3011 -2.2228 37 1 12.8409 -7.6099 -1.5082 38 1 10.8571 -5.9756 -2.8394 39 1 11.9151 -5.3402 -1.5054 40 1 8.9561 -7.2724 -2.4280 41 1 8.4708 -7.8286 -0.7974 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000894404307.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:57 Heat of formation + Delta-G solvation = -103.034959 kcal Electronic energy + Delta-G solvation = -19990.224598 eV Core-core repulsion = 16869.052987 eV Total energy + Delta-G solvation = -3121.171611 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 5.07 seconds Orbital eigenvalues (eV) -41.59236 -40.59520 -38.11484 -35.80815 -35.46835 -33.37873 -32.18188 -29.84160 -28.13796 -26.67872 -26.27776 -23.77343 -22.91527 -22.32668 -21.05999 -19.61687 -19.19540 -17.69850 -17.56261 -17.04845 -16.63000 -16.40447 -16.23322 -16.10726 -15.64248 -14.86687 -14.77507 -14.59337 -14.47534 -14.20481 -13.64031 -13.47778 -13.40002 -12.94894 -12.88424 -12.59139 -12.44561 -12.10077 -11.96582 -11.89168 -11.76562 -11.40932 -11.40218 -11.17354 -11.09069 -10.78222 -10.75721 -10.68127 -10.10535 -8.31517 -6.34468 1.33586 1.34928 1.50609 1.67931 2.22956 2.35289 2.82559 3.03963 3.37962 3.52006 3.68788 3.89333 3.94584 3.99710 4.03981 4.09987 4.33722 4.41037 4.46781 4.52173 4.56972 4.65059 4.77179 4.81341 4.85269 4.88916 4.95982 4.99549 5.04907 5.11184 5.14085 5.31889 5.36548 5.44601 5.47405 5.52053 5.61103 5.84792 6.23603 6.56863 6.71738 7.29309 7.30872 8.84197 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.055046 B = 0.002920 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.546808 B = 9585.713198 C = 9827.658958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.012 3.988 3 Si 0.940 3.060 4 H -0.269 1.269 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.005 3.995 10 C -0.117 4.117 11 C 0.514 3.486 12 O -0.588 6.588 13 N -0.717 5.717 14 C 0.125 3.875 15 C 0.070 3.930 16 H 0.092 0.908 17 C -0.132 4.132 18 C -0.118 4.118 19 C -0.120 4.120 20 C -0.139 4.139 21 C -0.131 4.131 22 C 0.064 3.936 23 O -0.392 6.392 24 H 0.267 0.733 25 H 0.011 0.989 26 H 0.007 0.993 27 H 0.100 0.900 28 H 0.104 0.896 29 H 0.415 0.585 30 H 0.054 0.946 31 H 0.082 0.918 32 H 0.076 0.924 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.078 0.922 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.085 0.915 40 H 0.095 0.905 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.176 -19.336 -0.113 32.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.185 4.185 3 Si 0.764 3.236 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.567 4.567 8 H 0.068 0.932 9 C -0.033 4.033 10 C -0.156 4.156 11 C 0.302 3.698 12 O -0.468 6.468 13 N -0.370 5.370 14 C 0.001 3.999 15 C 0.012 3.988 16 H 0.110 0.890 17 C -0.170 4.170 18 C -0.119 4.119 19 C -0.157 4.157 20 C -0.176 4.176 21 C -0.169 4.169 22 C -0.012 4.012 23 O -0.312 6.312 24 H 0.076 0.924 25 H 0.030 0.970 26 H 0.026 0.974 27 H 0.118 0.882 28 H 0.122 0.878 29 H 0.252 0.748 30 H 0.073 0.927 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.118 0.882 34 H 0.110 0.890 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 26.307 -18.430 -0.271 32.122 hybrid contribution -0.279 0.607 -0.055 0.671 sum 26.027 -17.823 -0.325 31.547 Atomic orbital electron populations 1.70025 1.07769 1.28116 1.52511 1.25821 0.95533 1.02910 0.94255 0.85808 0.79237 0.79411 0.79129 1.19444 1.20214 1.18539 1.21434 0.91227 0.93749 1.50333 0.93180 1.19223 0.93954 0.93744 0.96371 1.21496 0.89207 0.99945 1.04999 1.21202 0.91076 0.83299 0.74222 1.90630 1.71420 1.33243 1.51515 1.45881 1.07290 1.08616 1.75223 1.21467 0.79989 0.96233 1.02196 1.23307 0.96213 0.91915 0.87383 0.89003 1.22823 0.93230 0.99266 1.01664 1.22507 0.95251 0.96636 0.97471 1.22829 0.97331 0.98304 0.97217 1.22912 1.00945 0.96510 0.97270 1.22885 0.97172 0.98267 0.98560 1.23243 0.86424 0.89277 1.02303 1.89231 1.58484 1.45617 1.37841 0.92354 0.97022 0.97446 0.88222 0.87783 0.74808 0.92730 0.90036 0.90538 0.88177 0.88981 0.90367 0.89726 0.90677 0.91927 0.89624 0.88686 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.89 13.96 21.45 0.30 -59.59 16 2 C 0.01 0.75 5.47 84.65 0.46 1.21 16 3 Si 0.94 47.58 27.47 68.60 1.88 49.47 16 4 H -0.27 -13.22 7.11 99.48 0.71 -12.52 16 5 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 6 H -0.26 -13.14 6.54 99.48 0.65 -12.49 16 7 C -0.53 -31.21 9.66 25.60 0.25 -30.96 16 8 H 0.05 3.10 7.99 -2.91 -0.02 3.08 16 9 C 0.01 0.26 3.33 29.85 0.10 0.36 16 10 C -0.12 -4.60 5.64 29.85 0.17 -4.43 16 11 C 0.51 19.14 7.83 87.66 0.69 19.82 16 12 O -0.59 -26.89 15.98 -3.04 -0.05 -26.94 16 13 N -0.72 -19.54 5.56 -463.07 -2.57 -22.11 16 14 C 0.12 2.96 5.28 86.38 0.46 3.42 16 15 C 0.07 1.19 3.34 31.19 0.10 1.30 16 16 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 17 C -0.13 -1.73 6.14 31.35 0.19 -1.54 16 18 C -0.12 -1.39 1.17 -52.12 -0.06 -1.45 16 19 C -0.12 -0.97 7.30 30.81 0.22 -0.75 16 20 C -0.14 -1.17 7.95 31.25 0.25 -0.92 16 21 C -0.13 -1.51 7.22 30.82 0.22 -1.29 16 22 C 0.06 0.89 6.90 72.13 0.50 1.39 16 23 O -0.39 -8.09 11.35 -148.98 -1.69 -9.78 16 24 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 25 H 0.01 0.61 7.16 -2.39 -0.02 0.59 16 26 H 0.01 0.38 7.53 -2.39 -0.02 0.36 16 27 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 28 H 0.10 3.69 8.14 -2.39 -0.02 3.67 16 29 H 0.42 9.05 8.47 -92.71 -0.79 8.27 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.08 1.89 8.14 -2.39 -0.02 1.88 16 32 H 0.08 1.11 7.71 -2.39 -0.02 1.09 16 33 H 0.10 0.97 7.97 -2.39 -0.02 0.95 16 34 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 35 H 0.08 0.54 8.05 -2.38 -0.02 0.52 16 36 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 37 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 38 H 0.06 0.83 8.05 -2.39 -0.02 0.81 16 39 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 1.24 7.91 -2.39 -0.02 1.22 16 41 H 0.08 0.86 8.04 -2.39 -0.02 0.84 16 Total: -1.00 -74.61 332.77 1.58 -73.02 By element: Atomic # 1 Polarization: 9.61 SS G_CDS: 0.16 Total: 9.77 kcal Atomic # 6 Polarization: -17.39 SS G_CDS: 3.55 Total: -13.84 kcal Atomic # 7 Polarization: -79.43 SS G_CDS: -2.27 Total: -81.70 kcal Atomic # 8 Polarization: -34.98 SS G_CDS: -1.74 Total: -36.72 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 1.88 Total: 49.47 kcal Total: -74.61 1.58 -73.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000894404307.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.013 kcal (2) G-P(sol) polarization free energy of solvation -74.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.07 seconds