Wall clock time and date at job start Mon Mar 30 2020 00:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47138 * 270.00355 * 3 2 1 5 5 H 1.48493 * 109.47149 * 30.00518 * 3 2 1 6 6 H 1.48499 * 109.46928 * 150.00526 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47348 * 179.72561 * 13 11 10 15 15 H 1.08994 * 109.43354 * 305.00261 * 14 13 11 16 16 C 1.53073 * 109.43148 * 185.09111 * 14 13 11 17 17 C 1.53349 * 109.08245 * 180.48400 * 16 14 13 18 18 C 1.52856 * 108.70616 * 54.91550 * 17 16 14 19 19 C 1.53347 * 113.54652 * 77.70066 * 18 17 16 20 20 C 1.53853 * 86.95611 * 89.51980 * 19 18 17 21 21 C 1.53326 * 113.59154 * 175.68038 * 18 17 16 22 22 C 1.52754 * 112.68250 * 306.75255 * 18 17 16 23 23 O 1.42869 * 109.43103 * 64.90537 * 14 13 11 24 24 H 0.97005 * 119.99861 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 26 26 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 27 27 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46564 * 299.73030 * 13 11 10 29 29 H 1.08998 * 109.47012 * 59.72084 * 13 11 10 30 30 H 1.08996 * 109.53596 * 300.40726 * 16 14 13 31 31 H 1.08996 * 109.53382 * 60.64918 * 16 14 13 32 32 H 1.09005 * 109.63119 * 295.13750 * 17 16 14 33 33 H 1.08994 * 109.59052 * 174.66821 * 17 16 14 34 34 H 1.09002 * 113.63802 * 204.03777 * 19 18 17 35 35 H 1.09006 * 113.63818 * 335.00387 * 19 18 17 36 36 H 1.09005 * 113.60328 * 270.54420 * 20 19 18 37 37 H 1.08997 * 113.60194 * 139.67638 * 20 19 18 38 38 H 1.09001 * 113.63482 * 25.03504 * 21 18 17 39 39 H 1.08999 * 113.63487 * 155.91578 * 21 18 17 40 40 H 1.08998 * 109.52993 * 293.73612 * 22 18 17 41 41 H 1.09005 * 109.58008 * 173.57161 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1049 0.0048 13 6 2.7331 -6.0288 -0.0022 14 6 1.9681 -7.3538 0.0053 15 1 1.2798 -7.3704 0.8503 16 6 2.9593 -8.5133 0.1327 17 6 2.1854 -9.8372 0.1271 18 6 1.3161 -9.8917 -1.1290 19 6 2.0982 -10.2425 -2.4005 20 6 1.8018 -11.7172 -2.0774 21 6 0.5697 -11.2198 -1.3016 22 6 0.4223 -8.6622 -1.2806 23 8 1.2303 -7.4835 -1.2113 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4353 -0.0021 28 1 3.3559 -5.9737 -0.8950 29 1 3.3636 -5.9682 0.8849 30 1 3.6539 -8.4929 -0.7070 31 1 3.5123 -8.4191 1.0672 32 1 1.5523 -9.8951 1.0126 33 1 2.8875 -10.6709 0.1221 34 1 1.6230 -9.8918 -3.3167 35 1 3.1567 -9.9876 -2.3469 36 1 2.5560 -12.1856 -1.4449 37 1 1.5533 -12.3148 -2.9545 38 1 0.3997 -11.7505 -0.3648 39 1 -0.3297 -11.1395 -1.9121 40 1 -0.3148 -8.6464 -0.4778 41 1 -0.0880 -8.6980 -2.2431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897591707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:53 Heat of formation + Delta-G solvation = -85.055105 kcal Electronic energy + Delta-G solvation = -20548.556970 eV Core-core repulsion = 17428.165024 eV Total energy + Delta-G solvation = -3120.391946 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62231 -38.75074 -37.04709 -34.06487 -33.17667 -32.24728 -30.92764 -28.11803 -26.78934 -25.87631 -24.42905 -23.06304 -22.11314 -20.97453 -19.49673 -18.39843 -16.98010 -16.50389 -15.91239 -15.71723 -15.47999 -15.11549 -14.59734 -14.38730 -14.12158 -13.89463 -13.42453 -13.11638 -12.73326 -12.60978 -12.37745 -12.18894 -11.87870 -11.65466 -11.31545 -11.30078 -11.21313 -11.04948 -10.90271 -10.83030 -10.52882 -10.30394 -10.27104 -10.06882 -9.34419 -9.12503 -8.86070 -8.68205 -7.77252 -6.12422 -4.19003 3.26692 3.32508 3.35037 3.52291 3.87811 4.13739 4.37455 4.40053 4.43878 4.47792 4.63702 4.88092 4.94987 5.02514 5.17467 5.23437 5.32756 5.43730 5.49026 5.52596 5.56469 5.59222 5.66976 5.72090 5.72961 5.77984 5.84179 5.88714 5.93524 6.04139 6.17547 6.26651 6.31662 7.37967 7.47524 7.54809 7.59546 7.73417 8.02897 8.72917 8.85240 9.23356 9.48085 10.97873 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.053458 B = 0.003223 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.646240 B = 8684.644746 C = 8866.001407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.903 3.097 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.250 3.750 10 N -0.718 5.718 11 C 0.499 3.501 12 O -0.546 6.546 13 C -0.137 4.137 14 C 0.110 3.890 15 H 0.063 0.937 16 C -0.149 4.149 17 C -0.095 4.095 18 C -0.119 4.119 19 C -0.123 4.123 20 C -0.142 4.142 21 C -0.130 4.130 22 C 0.080 3.920 23 O -0.359 6.359 24 H 0.265 0.735 25 H 0.025 0.975 26 H 0.025 0.975 27 H 0.389 0.611 28 H 0.094 0.906 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.081 0.919 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.082 0.918 40 H 0.049 0.951 41 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.726 -22.055 -1.239 23.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.130 3.870 10 N -0.366 5.366 11 C 0.284 3.716 12 O -0.425 6.425 13 C -0.177 4.177 14 C 0.051 3.949 15 H 0.081 0.919 16 C -0.187 4.187 17 C -0.132 4.132 18 C -0.119 4.119 19 C -0.161 4.161 20 C -0.179 4.179 21 C -0.168 4.168 22 C 0.003 3.997 23 O -0.278 6.278 24 H 0.075 0.925 25 H 0.043 0.957 26 H 0.043 0.957 27 H 0.221 0.779 28 H 0.113 0.887 29 H 0.117 0.883 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.100 0.900 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.067 0.933 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.692 -21.913 -1.379 22.682 hybrid contribution 0.874 0.848 0.181 1.232 sum 6.567 -21.064 -1.198 22.097 Atomic orbital electron populations 1.69982 1.06107 1.27209 1.49062 1.24961 0.94909 0.99431 0.94789 0.86422 0.79609 0.82711 0.78200 1.20479 1.21035 1.19770 1.21247 0.93246 0.90552 1.52976 0.91948 1.19058 0.88360 0.82034 0.97597 1.46455 1.10915 1.06251 1.73025 1.20330 0.89537 0.84232 0.77529 1.90659 1.16834 1.84785 1.50189 1.21749 0.98626 0.92997 1.04343 1.21688 0.92263 0.92466 0.88469 0.91877 1.22245 0.98800 0.94936 1.02706 1.21342 0.98052 0.97547 0.96283 1.22251 0.97607 0.95726 0.96300 1.22846 1.00477 0.95454 0.97274 1.22857 0.98169 0.96769 1.00149 1.22852 0.97400 0.95939 1.00592 1.22448 0.91958 0.83400 1.01897 1.88040 1.60711 1.41554 1.37459 0.92502 0.95665 0.95711 0.77888 0.88739 0.88260 0.90963 0.90836 0.91542 0.91455 0.89997 0.91475 0.90416 0.91676 0.91471 0.89966 0.93286 0.89203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.60 13.29 55.43 0.74 -25.87 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 3 Si 0.90 21.15 29.54 -169.99 -5.02 16.12 16 4 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.03 9.28 -34.44 -0.32 -15.35 16 8 H 0.06 1.61 7.60 -52.49 -0.40 1.22 16 9 C 0.25 6.85 5.43 -5.20 -0.03 6.82 16 10 N -0.72 -15.63 5.55 -61.47 -0.34 -15.97 16 11 C 0.50 10.34 7.71 -10.98 -0.08 10.26 16 12 O -0.55 -13.68 15.41 -8.98 -0.14 -13.82 16 13 C -0.14 -1.99 5.41 -27.88 -0.15 -2.14 16 14 C 0.11 1.55 2.13 -26.69 -0.06 1.49 16 15 H 0.06 0.98 7.95 -51.93 -0.41 0.57 16 16 C -0.15 -1.54 5.35 -26.51 -0.14 -1.68 16 17 C -0.09 -0.89 5.11 -26.62 -0.14 -1.03 16 18 C -0.12 -1.18 0.86 -154.36 -0.13 -1.32 16 19 C -0.12 -1.15 7.12 -26.11 -0.19 -1.33 16 20 C -0.14 -1.10 7.73 -25.84 -0.20 -1.30 16 21 C -0.13 -1.08 7.23 -26.11 -0.19 -1.27 16 22 C 0.08 1.03 6.02 37.03 0.22 1.26 16 23 O -0.36 -5.85 9.64 -49.77 -0.48 -6.33 16 24 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.02 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.39 7.20 8.32 -40.82 -0.34 6.86 16 28 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 29 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.07 0.73 7.66 -51.93 -0.40 0.33 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.55 7.34 -51.93 -0.38 0.17 16 34 H 0.08 0.78 8.03 -51.93 -0.42 0.37 16 35 H 0.07 0.63 7.61 -51.93 -0.40 0.24 16 36 H 0.08 0.56 7.64 -51.93 -0.40 0.16 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.08 0.65 8.10 -51.93 -0.42 0.23 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.09 1.08 8.05 -51.93 -0.42 0.67 16 LS Contribution 329.42 15.07 4.96 4.96 Total: -1.00 -33.26 329.42 -8.69 -41.95 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -6.91 Total: 2.86 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.50 Total: -3.92 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.40 Total: -41.84 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.62 Total: -20.15 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -33.26 -8.69 -41.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.102 kcal (2) G-P(sol) polarization free energy of solvation -33.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds