Wall clock time and date at job start Mon Mar 30 2020 00:59:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86808 * 119.99954 * 2 1 4 4 H 1.48496 * 109.47138 * 270.00355 * 3 2 1 5 5 H 1.48493 * 109.47149 * 30.00518 * 3 2 1 6 6 H 1.48499 * 109.46928 * 150.00526 * 3 2 1 7 7 C 1.37878 * 120.00036 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99970 * 179.97438 * 7 2 1 9 9 C 1.50690 * 119.99820 * 359.97438 * 7 2 1 10 10 N 1.46506 * 109.47072 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99968 * 179.97438 * 10 9 7 12 12 O 1.21283 * 120.00360 * 359.73034 * 11 10 9 13 13 C 1.50706 * 120.00081 * 180.02562 * 11 10 9 14 14 C 1.52998 * 109.47348 * 179.72561 * 13 11 10 15 15 H 1.08994 * 109.43354 * 305.00261 * 14 13 11 16 16 C 1.53073 * 109.43148 * 185.09111 * 14 13 11 17 17 C 1.53349 * 109.08245 * 180.48400 * 16 14 13 18 18 C 1.52856 * 108.70616 * 54.91550 * 17 16 14 19 19 C 1.53347 * 113.54652 * 77.70066 * 18 17 16 20 20 C 1.53853 * 86.95611 * 89.51980 * 19 18 17 21 21 C 1.53326 * 113.59154 * 175.68038 * 18 17 16 22 22 C 1.52754 * 112.68250 * 306.75255 * 18 17 16 23 23 O 1.42869 * 109.43103 * 64.90537 * 14 13 11 24 24 H 0.97005 * 119.99861 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47343 * 60.00467 * 9 7 2 26 26 H 1.08998 * 109.47656 * 300.00324 * 9 7 2 27 27 H 0.96998 * 119.99507 * 0.02562 * 10 9 7 28 28 H 1.09001 * 109.46564 * 299.73030 * 13 11 10 29 29 H 1.08998 * 109.47012 * 59.72084 * 13 11 10 30 30 H 1.08996 * 109.53596 * 300.40726 * 16 14 13 31 31 H 1.08996 * 109.53382 * 60.64918 * 16 14 13 32 32 H 1.09005 * 109.63119 * 295.13750 * 17 16 14 33 33 H 1.08994 * 109.59052 * 174.66821 * 17 16 14 34 34 H 1.09002 * 113.63802 * 204.03777 * 19 18 17 35 35 H 1.09006 * 113.63818 * 335.00387 * 19 18 17 36 36 H 1.09005 * 113.60328 * 270.54420 * 20 19 18 37 37 H 1.08997 * 113.60194 * 139.67638 * 20 19 18 38 38 H 1.09001 * 113.63482 * 25.03504 * 21 18 17 39 39 H 1.08999 * 113.63487 * 155.91578 * 21 18 17 40 40 H 1.08998 * 109.52993 * 293.73612 * 22 18 17 41 41 H 1.09005 * 109.58008 * 173.57161 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4467 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5614 -5.1049 0.0048 13 6 2.7331 -6.0288 -0.0022 14 6 1.9681 -7.3538 0.0053 15 1 1.2798 -7.3704 0.8503 16 6 2.9593 -8.5133 0.1327 17 6 2.1854 -9.8372 0.1271 18 6 1.3161 -9.8917 -1.1290 19 6 2.0982 -10.2425 -2.4005 20 6 1.8018 -11.7172 -2.0774 21 6 0.5697 -11.2198 -1.3016 22 6 0.4223 -8.6622 -1.2806 23 8 1.2303 -7.4835 -1.2113 24 1 -0.4850 0.8401 0.0004 25 1 0.6241 -2.5567 -0.8903 26 1 0.6247 -2.5570 0.8896 27 1 3.1567 -3.4353 -0.0021 28 1 3.3559 -5.9737 -0.8950 29 1 3.3636 -5.9682 0.8849 30 1 3.6539 -8.4929 -0.7070 31 1 3.5123 -8.4191 1.0672 32 1 1.5523 -9.8951 1.0126 33 1 2.8875 -10.6709 0.1221 34 1 1.6230 -9.8918 -3.3167 35 1 3.1567 -9.9876 -2.3469 36 1 2.5560 -12.1856 -1.4449 37 1 1.5533 -12.3148 -2.9545 38 1 0.3997 -11.7505 -0.3648 39 1 -0.3297 -11.1395 -1.9121 40 1 -0.3148 -8.6464 -0.4778 41 1 -0.0880 -8.6980 -2.2431 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897591707.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:59:50 Heat of formation + Delta-G solvation = -107.244643 kcal Electronic energy + Delta-G solvation = -20549.519181 eV Core-core repulsion = 17428.165024 eV Total energy + Delta-G solvation = -3121.354156 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 2.91 seconds Orbital eigenvalues (eV) -41.51828 -40.35699 -38.12997 -36.08727 -34.39709 -34.12178 -31.98619 -29.64630 -28.33021 -26.57332 -25.64087 -24.46840 -23.47567 -21.92389 -21.24861 -19.25361 -18.83825 -17.59171 -17.37622 -17.15979 -16.58487 -16.47520 -16.14636 -15.99945 -15.31920 -14.92933 -14.67911 -14.28888 -14.03466 -14.00459 -13.70591 -13.52997 -13.19956 -12.96812 -12.82229 -12.66844 -12.46417 -12.22313 -12.07411 -11.99466 -11.84742 -11.48437 -11.42083 -11.03824 -10.92850 -10.80305 -10.66023 -10.08504 -9.78447 -8.29293 -6.46348 1.42546 1.45575 1.56806 1.86478 2.33138 2.63502 2.86065 3.05305 3.63726 3.66902 3.69713 3.86627 3.91289 4.00134 4.16682 4.19349 4.36965 4.48615 4.54788 4.62045 4.72950 4.75359 4.82213 4.87042 4.90818 4.95798 5.07941 5.08616 5.12669 5.14494 5.19093 5.24124 5.37840 5.48223 5.50636 5.61022 5.72898 5.85678 6.40569 6.65531 6.97014 7.23600 7.57427 8.83201 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.053458 B = 0.003223 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 523.646240 B = 8684.644746 C = 8866.001407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.987 3.013 4 H -0.271 1.271 5 H -0.284 1.284 6 H -0.253 1.253 7 C -0.556 4.556 8 H 0.085 0.915 9 C 0.267 3.733 10 N -0.712 5.712 11 C 0.492 3.508 12 O -0.597 6.597 13 C -0.123 4.123 14 C 0.104 3.896 15 H 0.039 0.961 16 C -0.138 4.138 17 C -0.095 4.095 18 C -0.120 4.120 19 C -0.126 4.126 20 C -0.130 4.130 21 C -0.129 4.129 22 C 0.074 3.926 23 O -0.394 6.394 24 H 0.269 0.731 25 H -0.019 1.019 26 H -0.015 1.015 27 H 0.408 0.592 28 H 0.117 0.883 29 H 0.140 0.860 30 H 0.080 0.920 31 H 0.097 0.903 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.080 0.920 40 H 0.034 0.966 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.991 -23.053 -1.007 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.177 1.177 7 C -0.594 4.594 8 H 0.103 0.897 9 C 0.144 3.856 10 N -0.363 5.363 11 C 0.280 3.720 12 O -0.479 6.479 13 C -0.162 4.162 14 C 0.045 3.955 15 H 0.057 0.943 16 C -0.176 4.176 17 C -0.132 4.132 18 C -0.120 4.120 19 C -0.163 4.163 20 C -0.168 4.168 21 C -0.167 4.167 22 C -0.003 4.003 23 O -0.313 6.313 24 H 0.077 0.923 25 H -0.001 1.001 26 H 0.003 0.997 27 H 0.244 0.756 28 H 0.135 0.865 29 H 0.158 0.842 30 H 0.099 0.901 31 H 0.115 0.885 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.091 0.909 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.052 0.948 41 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.009 -22.948 -1.145 24.679 hybrid contribution -0.244 1.130 0.094 1.160 sum 8.764 -21.817 -1.051 23.535 Atomic orbital electron populations 1.70154 1.08388 1.28561 1.50057 1.26124 0.95798 1.04076 0.93831 0.85122 0.78514 0.76754 0.78608 1.19622 1.20918 1.17708 1.21639 0.94345 0.90564 1.52804 0.89690 1.18486 0.88787 0.84645 0.93681 1.46221 1.11053 1.05627 1.73359 1.21537 0.90069 0.85036 0.75390 1.90637 1.19681 1.85510 1.52030 1.21823 0.97281 0.89841 1.07266 1.21827 0.92686 0.93950 0.86993 0.94277 1.22174 0.97826 0.93329 1.04262 1.21383 0.98257 0.97883 0.95660 1.22264 0.97722 0.94712 0.97303 1.22851 1.00301 0.96758 0.96412 1.22823 0.97764 0.95728 1.00444 1.22867 0.97723 0.94891 1.01172 1.22580 0.92270 0.84180 1.01261 1.87977 1.61522 1.43357 1.38474 0.92265 1.00117 0.99721 0.75593 0.86477 0.84184 0.90118 0.88457 0.91775 0.89125 0.90913 0.91215 0.89099 0.90864 0.90663 0.90113 0.94803 0.89396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.71 13.29 21.45 0.28 -57.43 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.99 43.00 29.54 68.60 2.03 45.02 16 4 H -0.27 -11.40 7.11 99.48 0.71 -10.70 16 5 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 6 H -0.25 -10.19 7.11 99.48 0.71 -9.48 16 7 C -0.56 -31.04 9.28 25.60 0.24 -30.81 16 8 H 0.09 4.26 7.60 -2.91 -0.02 4.24 16 9 C 0.27 15.29 5.43 85.63 0.46 15.76 16 10 N -0.71 -31.38 5.55 -466.79 -2.59 -33.97 16 11 C 0.49 20.71 7.71 87.66 0.68 21.39 16 12 O -0.60 -31.54 15.41 10.86 0.17 -31.37 16 13 C -0.12 -3.34 5.41 29.85 0.16 -3.18 16 14 C 0.10 2.86 2.13 30.62 0.07 2.92 16 15 H 0.04 1.25 7.95 -2.39 -0.02 1.23 16 16 C -0.14 -2.46 5.35 30.74 0.16 -2.30 16 17 C -0.09 -1.55 5.11 30.66 0.16 -1.40 16 18 C -0.12 -2.25 0.86 -52.09 -0.04 -2.30 16 19 C -0.13 -2.13 7.12 31.00 0.22 -1.90 16 20 C -0.13 -1.67 7.73 31.17 0.24 -1.43 16 21 C -0.13 -1.94 7.23 30.99 0.22 -1.72 16 22 C 0.07 1.97 6.02 71.90 0.43 2.40 16 23 O -0.39 -13.10 9.64 -135.08 -1.30 -14.40 16 24 H 0.27 15.46 8.31 -92.70 -0.77 14.69 16 25 H -0.02 -1.24 8.14 -2.39 -0.02 -1.26 16 26 H -0.02 -0.97 8.14 -2.39 -0.02 -0.99 16 27 H 0.41 14.60 8.32 -92.71 -0.77 13.83 16 28 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 29 H 0.14 2.69 8.14 -2.39 -0.02 2.67 16 30 H 0.08 1.34 7.66 -2.39 -0.02 1.32 16 31 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 33 H 0.09 1.11 7.34 -2.39 -0.02 1.10 16 34 H 0.07 1.35 8.03 -2.39 -0.02 1.33 16 35 H 0.07 1.14 7.61 -2.38 -0.02 1.12 16 36 H 0.09 0.96 7.64 -2.38 -0.02 0.94 16 37 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 38 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 39 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 40 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.09 2.26 8.05 -2.38 -0.02 2.24 16 Total: -1.00 -76.68 329.42 2.28 -74.39 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.23 Total: 19.80 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: 3.46 Total: -2.04 kcal Atomic # 7 Polarization: -89.10 SS G_CDS: -2.30 Total: -91.40 kcal Atomic # 8 Polarization: -44.64 SS G_CDS: -1.13 Total: -45.78 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.02 kcal Total: -76.68 2.28 -74.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897591707.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.851 kcal (2) G-P(sol) polarization free energy of solvation -76.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.245 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.91 seconds