Wall clock time and date at job start Mon Mar 30 2020 01:34:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.47193 * 126.09173 * 359.69049 * 13 11 10 15 15 C 1.53834 * 105.51426 * 210.81915 * 14 13 11 16 16 C 1.54032 * 104.51071 * 331.17077 * 15 14 13 17 17 C 1.53001 * 111.63338 * 138.06179 * 16 15 14 18 18 O 1.42898 * 109.47187 * 62.24351 * 17 16 15 19 19 C 1.54206 * 109.00037 * 262.62451 * 16 15 14 20 20 C 1.54862 * 104.27275 * 89.64949 * 19 16 15 21 21 C 1.57099 * 102.87889 * 38.21412 * 20 19 16 22 22 C 1.46811 * 126.09309 * 180.02562 * 13 11 10 23 23 H 1.08996 * 110.87001 * 38.49317 * 22 13 11 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09004 * 110.26386 * 329.86696 * 14 13 11 30 30 H 1.08997 * 110.26714 * 91.91788 * 14 13 11 31 31 H 1.08998 * 110.55687 * 212.33602 * 15 14 13 32 32 H 1.08999 * 110.36812 * 89.91090 * 15 14 13 33 33 H 1.09001 * 109.47193 * 182.24881 * 17 16 15 34 34 H 1.09006 * 109.46961 * 302.24917 * 17 16 15 35 35 H 0.96700 * 114.00085 * 179.97438 * 18 17 16 36 36 H 1.09006 * 110.47092 * 208.35070 * 19 16 15 37 37 H 1.09004 * 110.47307 * 330.95142 * 19 16 15 38 38 H 1.09000 * 110.75683 * 156.37030 * 20 19 16 39 39 H 1.08997 * 110.75658 * 279.55816 * 20 19 16 40 40 H 1.09001 * 111.19401 * 203.38795 * 21 20 19 41 41 H 1.08999 * 110.75584 * 80.07951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5284 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2022 -3.8040 -0.0008 14 6 5.6057 -5.1497 0.0050 15 6 6.6062 -6.0401 0.7616 16 6 7.9764 -5.3846 0.5058 17 6 8.8343 -5.3580 1.7724 18 8 9.0960 -6.6966 2.1987 19 6 8.6747 -6.1184 -0.6569 20 6 8.2056 -5.3605 -1.9233 21 6 8.1858 -3.8632 -1.4480 22 6 7.6620 -3.9599 -0.0004 23 1 8.1325 -3.2090 0.6343 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 4.6466 -5.1352 0.5228 30 1 5.4791 -5.5109 -1.0156 31 1 6.5902 -7.0556 0.3659 32 1 6.3794 -6.0443 1.8278 33 1 9.7769 -4.8527 1.5622 34 1 8.3030 -4.8233 2.5598 35 1 9.6365 -6.7561 2.9983 36 1 9.7578 -6.0535 -0.5530 37 1 8.3563 -7.1602 -0.6963 38 1 8.9165 -5.4938 -2.7388 39 1 7.2102 -5.6881 -2.2231 40 1 7.5099 -3.2648 -2.0589 41 1 9.1901 -3.4400 -1.4627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000899433883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:45 Heat of formation + Delta-G solvation = -99.505524 kcal Electronic energy + Delta-G solvation = -21130.501280 eV Core-core repulsion = 18009.482717 eV Total energy + Delta-G solvation = -3121.018563 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.89983 -38.39024 -36.61155 -34.21256 -33.45543 -31.78525 -31.25113 -29.17841 -27.84674 -25.86745 -24.54458 -22.87776 -21.53514 -20.58221 -19.09493 -18.66892 -17.46269 -17.11136 -16.63339 -15.94057 -15.20587 -15.01841 -14.82947 -14.39716 -14.03594 -13.86457 -13.55193 -12.96791 -12.82489 -12.62599 -12.50019 -12.13418 -11.89174 -11.57113 -11.38276 -11.31673 -11.10960 -10.96772 -10.93966 -10.72019 -10.54634 -10.20099 -10.10507 -10.03038 -9.77126 -9.22044 -9.14666 -8.50857 -8.44711 -6.02135 -4.00705 3.10255 3.20333 3.38591 3.45055 3.56251 3.74980 4.27869 4.31839 4.51872 4.55675 4.88179 4.93298 5.02761 5.06944 5.14666 5.20398 5.26898 5.33432 5.40711 5.47402 5.51144 5.62510 5.70527 5.75197 5.83843 5.85476 5.96771 6.01870 6.09775 6.12364 6.14971 6.17985 6.55688 6.72981 7.31754 7.37490 7.44586 7.75993 7.84152 8.50479 8.64539 9.00932 9.61035 11.10738 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.004230 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.460265 B = 6618.514895 C = 6745.928968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.069 3.931 3 Si 0.877 3.123 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.524 4.524 8 H 0.072 0.928 9 C 0.002 3.998 10 C -0.117 4.117 11 C 0.528 3.472 12 O -0.539 6.539 13 N -0.620 5.620 14 C 0.100 3.900 15 C -0.114 4.114 16 C -0.069 4.069 17 C 0.095 3.905 18 O -0.568 6.568 19 C -0.101 4.101 20 C -0.126 4.126 21 C -0.130 4.130 22 C 0.142 3.858 23 H 0.082 0.918 24 H 0.263 0.737 25 H 0.019 0.981 26 H 0.023 0.977 27 H 0.085 0.915 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.049 0.951 35 H 0.378 0.622 36 H 0.066 0.934 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.410 -15.463 1.134 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.156 4.156 11 C 0.319 3.681 12 O -0.415 6.415 13 N -0.356 5.356 14 C -0.024 4.024 15 C -0.152 4.152 16 C -0.070 4.070 17 C 0.017 3.983 18 O -0.374 6.374 19 C -0.138 4.138 20 C -0.163 4.163 21 C -0.169 4.169 22 C 0.037 3.963 23 H 0.100 0.900 24 H 0.073 0.927 25 H 0.037 0.963 26 H 0.041 0.959 27 H 0.103 0.897 28 H 0.103 0.897 29 H 0.101 0.899 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.225 0.775 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.088 0.912 40 H 0.093 0.907 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.142 -14.799 0.608 24.203 hybrid contribution 0.658 1.009 0.505 1.306 sum 19.800 -13.790 1.112 24.154 Atomic orbital electron populations 1.69912 1.06286 1.26950 1.51114 1.24963 0.94697 0.99197 0.94329 0.86801 0.80621 0.83415 0.78759 1.20228 1.21431 1.18558 1.21106 0.89241 0.94562 1.51297 0.90942 1.19379 0.96427 0.90189 0.97629 1.21654 0.87657 1.03148 1.03182 1.21291 0.91228 0.81308 0.74289 1.90654 1.70781 1.30636 1.49415 1.48653 1.05833 1.06066 1.75022 1.22123 0.97560 0.82145 1.00528 1.22438 0.92710 0.98884 1.01185 1.21826 0.95762 0.94758 0.94668 1.22086 0.97694 0.83532 0.94985 1.86462 1.75394 1.27042 1.48452 1.22337 0.99804 0.98880 0.92811 1.22913 1.01400 0.94796 0.97200 1.23091 1.01300 0.96747 0.95761 1.21817 0.82422 0.95326 0.96708 0.89969 0.92727 0.96285 0.95872 0.89703 0.89710 0.89889 0.91478 0.89871 0.90852 0.93388 0.93296 0.77506 0.91526 0.90967 0.91589 0.91246 0.90700 0.91029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.20 13.96 55.43 0.77 -27.42 16 2 C 0.07 2.07 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.81 27.47 -169.99 -4.67 18.14 16 4 H -0.28 -7.08 7.11 56.52 0.40 -6.68 16 5 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 6 H -0.26 -6.78 6.54 56.52 0.37 -6.41 16 7 C -0.52 -15.17 9.66 -34.44 -0.33 -15.50 16 8 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 9 C 0.00 0.04 3.33 -27.88 -0.09 -0.05 16 10 C -0.12 -2.35 4.59 -27.89 -0.13 -2.48 16 11 C 0.53 10.12 7.86 -10.99 -0.09 10.04 16 12 O -0.54 -12.33 16.30 5.56 0.09 -12.24 16 13 N -0.62 -9.15 2.85 -163.22 -0.46 -9.61 16 14 C 0.10 1.15 6.34 -3.23 -0.02 1.13 16 15 C -0.11 -1.13 5.89 -25.76 -0.15 -1.28 16 16 C -0.07 -0.69 0.77 -152.59 -0.12 -0.81 16 17 C 0.09 0.83 5.77 37.16 0.21 1.05 16 18 O -0.57 -4.64 13.19 -35.23 -0.46 -5.11 16 19 C -0.10 -0.89 5.63 -25.12 -0.14 -1.03 16 20 C -0.13 -1.18 6.59 -23.53 -0.16 -1.33 16 21 C -0.13 -1.52 6.67 -23.85 -0.16 -1.68 16 22 C 0.14 1.79 3.13 -66.36 -0.21 1.58 16 23 H 0.08 1.14 7.76 -51.93 -0.40 0.74 16 24 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 25 H 0.02 0.50 7.53 -51.93 -0.39 0.11 16 26 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 27 H 0.08 1.59 7.82 -51.93 -0.41 1.18 16 28 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 29 H 0.08 0.94 7.27 -51.93 -0.38 0.56 16 30 H 0.07 0.71 7.14 -51.93 -0.37 0.34 16 31 H 0.08 0.73 7.33 -51.93 -0.38 0.34 16 32 H 0.07 0.75 7.86 -51.93 -0.41 0.34 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.38 1.49 9.12 45.56 0.42 1.90 16 36 H 0.07 0.56 7.97 -51.93 -0.41 0.15 16 37 H 0.07 0.62 7.39 -51.93 -0.38 0.23 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 39 H 0.07 0.67 7.04 -51.93 -0.37 0.30 16 40 H 0.07 1.05 8.05 -51.93 -0.42 0.63 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 322.67 15.07 4.86 4.86 Total: -1.00 -34.67 322.67 -7.32 -41.99 By element: Atomic # 1 Polarization: 3.76 SS G_CDS: -5.97 Total: -2.22 kcal Atomic # 6 Polarization: -6.92 SS G_CDS: -1.48 Total: -8.40 kcal Atomic # 7 Polarization: -37.34 SS G_CDS: 0.31 Total: -37.03 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.37 Total: -17.35 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.67 Total: 18.14 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -34.67 -7.32 -41.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899433883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.515 kcal (2) G-P(sol) polarization free energy of solvation -34.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds