Wall clock time and date at job start Mon Mar 30 2020 01:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00530 * 2 1 4 4 H 1.48504 * 109.47061 * 270.00261 * 3 2 1 5 5 H 1.48497 * 109.46906 * 29.99434 * 3 2 1 6 6 H 1.48498 * 109.47403 * 149.99880 * 3 2 1 7 7 C 1.37880 * 119.99594 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00010 * 359.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 180.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 O 1.21282 * 120.00011 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00369 * 180.02562 * 11 10 9 14 14 C 1.47193 * 126.09173 * 359.69049 * 13 11 10 15 15 C 1.53834 * 105.51426 * 210.81915 * 14 13 11 16 16 C 1.54032 * 104.51071 * 331.17077 * 15 14 13 17 17 C 1.53001 * 111.63338 * 138.06179 * 16 15 14 18 18 O 1.42898 * 109.47187 * 62.24351 * 17 16 15 19 19 C 1.54206 * 109.00037 * 262.62451 * 16 15 14 20 20 C 1.54862 * 104.27275 * 89.64949 * 19 16 15 21 21 C 1.57099 * 102.87889 * 38.21412 * 20 19 16 22 22 C 1.46811 * 126.09309 * 180.02562 * 13 11 10 23 23 H 1.08996 * 110.87001 * 38.49317 * 22 13 11 24 24 H 0.97002 * 119.99739 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 26 26 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 27 27 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 28 28 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 29 29 H 1.09004 * 110.26386 * 329.86696 * 14 13 11 30 30 H 1.08997 * 110.26714 * 91.91788 * 14 13 11 31 31 H 1.08998 * 110.55687 * 212.33602 * 15 14 13 32 32 H 1.08999 * 110.36812 * 89.91090 * 15 14 13 33 33 H 1.09001 * 109.47193 * 182.24881 * 17 16 15 34 34 H 1.09006 * 109.46961 * 302.24917 * 17 16 15 35 35 H 0.96700 * 114.00085 * 179.97438 * 18 17 16 36 36 H 1.09006 * 110.47092 * 208.35070 * 19 16 15 37 37 H 1.09004 * 110.47307 * 330.95142 * 19 16 15 38 38 H 1.09000 * 110.75683 * 156.37030 * 20 19 16 39 39 H 1.08997 * 110.75658 * 279.55816 * 20 19 16 40 40 H 1.09001 * 111.19401 * 203.38795 * 21 20 19 41 41 H 1.08999 * 110.75584 * 80.07951 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.6999 6 1 3.5468 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5114 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 6 5.5284 -2.6368 -0.0001 12 8 6.1349 -1.5865 0.0004 13 7 6.2022 -3.8040 -0.0008 14 6 5.6057 -5.1497 0.0050 15 6 6.6062 -6.0401 0.7616 16 6 7.9764 -5.3846 0.5058 17 6 8.8343 -5.3580 1.7724 18 8 9.0960 -6.6966 2.1987 19 6 8.6747 -6.1184 -0.6569 20 6 8.2056 -5.3605 -1.9233 21 6 8.1858 -3.8632 -1.4480 22 6 7.6620 -3.9599 -0.0004 23 1 8.1325 -3.2090 0.6343 24 1 -0.4850 0.8401 -0.0004 25 1 3.8751 -0.6798 -0.8895 26 1 3.8745 -0.6810 0.8905 27 1 3.6577 -3.1507 0.8897 28 1 3.6584 -3.1504 -0.8902 29 1 4.6466 -5.1352 0.5228 30 1 5.4791 -5.5109 -1.0156 31 1 6.5902 -7.0556 0.3659 32 1 6.3794 -6.0443 1.8278 33 1 9.7769 -4.8527 1.5622 34 1 8.3030 -4.8233 2.5598 35 1 9.6365 -6.7561 2.9983 36 1 9.7578 -6.0535 -0.5530 37 1 8.3563 -7.1602 -0.6963 38 1 8.9165 -5.4938 -2.7388 39 1 7.2102 -5.6881 -2.2231 40 1 7.5099 -3.2648 -2.0589 41 1 9.1901 -3.4400 -1.4627 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899433883.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:34:44 Heat of formation + Delta-G solvation = -124.211004 kcal Electronic energy + Delta-G solvation = -21131.572590 eV Core-core repulsion = 18009.482717 eV Total energy + Delta-G solvation = -3122.089873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.92657 -39.74330 -37.32941 -35.60181 -35.22921 -33.28644 -32.69807 -30.03854 -29.11308 -27.48311 -25.40862 -24.06923 -22.94826 -21.83045 -20.03862 -19.98071 -19.07837 -18.18924 -17.78899 -17.30491 -16.34341 -16.23922 -16.14019 -15.78926 -15.47989 -14.78564 -14.73684 -14.64401 -14.12527 -14.01485 -13.56085 -13.38418 -13.18538 -12.94809 -12.77895 -12.43251 -12.21504 -12.06701 -11.99262 -11.94755 -11.82897 -11.80002 -11.45611 -11.41171 -11.27956 -10.83314 -10.79787 -10.76879 -9.66506 -8.33264 -6.36297 1.31533 1.33277 1.48627 1.60974 1.97478 2.33454 3.01261 3.02250 3.46610 3.50200 3.74663 3.91254 4.06820 4.13897 4.26335 4.28283 4.32466 4.38731 4.41293 4.45625 4.57279 4.65339 4.67383 4.74976 4.83861 4.92533 4.94612 5.06705 5.12760 5.14670 5.21551 5.29489 5.33998 5.39795 5.43251 5.52034 5.58141 6.21553 6.49506 6.69466 6.91428 7.17724 7.29095 8.82448 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.033466 B = 0.004230 C = 0.004150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 836.460265 B = 6618.514895 C = 6745.928968 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.016 3.984 3 Si 0.937 3.063 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.264 1.264 7 C -0.529 4.529 8 H 0.050 0.950 9 C 0.007 3.993 10 C -0.109 4.109 11 C 0.528 3.472 12 O -0.586 6.586 13 N -0.612 5.612 14 C 0.091 3.909 15 C -0.107 4.107 16 C -0.066 4.066 17 C 0.099 3.901 18 O -0.577 6.577 19 C -0.093 4.093 20 C -0.118 4.118 21 C -0.132 4.132 22 C 0.133 3.867 23 H 0.065 0.935 24 H 0.268 0.732 25 H 0.008 0.992 26 H 0.009 0.991 27 H 0.099 0.901 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.103 0.897 32 H 0.070 0.930 33 H 0.058 0.942 34 H 0.041 0.959 35 H 0.397 0.603 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.046 0.954 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.224 -17.117 1.073 27.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.182 4.182 3 Si 0.762 3.238 4 H -0.193 1.193 5 H -0.201 1.201 6 H -0.188 1.188 7 C -0.567 4.567 8 H 0.069 0.931 9 C -0.031 4.031 10 C -0.149 4.149 11 C 0.319 3.681 12 O -0.466 6.466 13 N -0.345 5.345 14 C -0.031 4.031 15 C -0.145 4.145 16 C -0.066 4.066 17 C 0.020 3.980 18 O -0.385 6.385 19 C -0.130 4.130 20 C -0.155 4.155 21 C -0.170 4.170 22 C 0.030 3.970 23 H 0.083 0.917 24 H 0.077 0.923 25 H 0.026 0.974 26 H 0.027 0.973 27 H 0.117 0.883 28 H 0.117 0.883 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.122 0.878 32 H 0.089 0.911 33 H 0.076 0.924 34 H 0.059 0.941 35 H 0.247 0.753 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.086 0.914 40 H 0.065 0.935 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 20.977 -16.519 0.559 26.706 hybrid contribution 0.091 1.416 0.539 1.518 sum 21.067 -15.103 1.098 25.944 Atomic orbital electron populations 1.70018 1.07724 1.28137 1.52370 1.25773 0.95483 1.02748 0.94173 0.85846 0.79190 0.79592 0.79193 1.19309 1.20109 1.18805 1.21392 0.91043 0.93782 1.50522 0.93139 1.19211 0.94107 0.93485 0.96277 1.21454 0.88907 0.99957 1.04568 1.20919 0.90744 0.81976 0.74486 1.90627 1.71347 1.32529 1.52095 1.48560 1.07198 1.06077 1.72704 1.22425 0.98162 0.80567 1.01937 1.22433 0.91866 0.99344 1.00882 1.21815 0.96298 0.92708 0.95823 1.21965 0.97835 0.84010 0.94147 1.86402 1.76015 1.26306 1.49770 1.22309 1.00164 0.99036 0.91509 1.22884 1.01909 0.92697 0.98023 1.23069 1.01003 0.98346 0.94611 1.22045 0.80727 0.96864 0.97399 0.91687 0.92302 0.97391 0.97282 0.88319 0.88343 0.89631 0.89908 0.87847 0.91083 0.92418 0.94112 0.75321 0.90703 0.89812 0.90058 0.91353 0.93476 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.43 13.96 21.45 0.30 -59.13 16 2 C 0.02 0.97 5.47 84.66 0.46 1.43 16 3 Si 0.94 47.43 27.47 68.60 1.88 49.32 16 4 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 5 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 6 H -0.26 -13.36 6.54 99.48 0.65 -12.71 16 7 C -0.53 -31.12 9.66 25.60 0.25 -30.87 16 8 H 0.05 3.11 7.99 -2.91 -0.02 3.09 16 9 C 0.01 0.37 3.33 29.85 0.10 0.47 16 10 C -0.11 -4.39 4.59 29.85 0.14 -4.25 16 11 C 0.53 20.33 7.86 87.66 0.69 21.02 16 12 O -0.59 -27.38 16.30 -3.04 -0.05 -27.43 16 13 N -0.61 -17.60 2.85 -788.71 -2.25 -19.85 16 14 C 0.09 1.91 6.34 86.53 0.55 2.46 16 15 C -0.11 -1.82 5.89 31.22 0.18 -1.64 16 16 C -0.07 -1.15 0.77 -50.94 -0.04 -1.19 16 17 C 0.10 1.50 5.77 71.98 0.42 1.92 16 18 O -0.58 -7.66 13.19 -148.98 -1.96 -9.62 16 19 C -0.09 -1.33 5.63 31.64 0.18 -1.15 16 20 C -0.12 -1.89 6.59 32.67 0.22 -1.68 16 21 C -0.13 -2.94 6.67 32.46 0.22 -2.73 16 22 C 0.13 3.24 3.13 45.84 0.14 3.39 16 23 H 0.06 1.80 7.76 -2.39 -0.02 1.78 16 24 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.01 0.41 7.53 -2.39 -0.02 0.39 16 26 H 0.01 0.48 7.16 -2.39 -0.02 0.46 16 27 H 0.10 3.65 7.82 -2.39 -0.02 3.63 16 28 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 29 H 0.09 1.78 7.27 -2.38 -0.02 1.76 16 30 H 0.08 1.53 7.14 -2.39 -0.02 1.52 16 31 H 0.10 1.40 7.33 -2.39 -0.02 1.38 16 32 H 0.07 1.27 7.86 -2.39 -0.02 1.25 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.04 0.68 8.14 -2.38 -0.02 0.67 16 35 H 0.40 1.97 9.12 -74.06 -0.68 1.29 16 36 H 0.07 0.99 7.97 -2.38 -0.02 0.97 16 37 H 0.08 1.07 7.39 -2.38 -0.02 1.05 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.13 7.04 -2.39 -0.02 1.11 16 40 H 0.05 1.31 8.05 -2.39 -0.02 1.30 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -75.23 322.67 1.70 -73.53 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: 0.28 Total: 6.00 kcal Atomic # 6 Polarization: -16.31 SS G_CDS: 3.50 Total: -12.81 kcal Atomic # 7 Polarization: -77.03 SS G_CDS: -1.95 Total: -78.98 kcal Atomic # 8 Polarization: -35.04 SS G_CDS: -2.01 Total: -37.05 kcal Atomic # 14 Polarization: 47.43 SS G_CDS: 1.88 Total: 49.32 kcal Total: -75.23 1.70 -73.53 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899433883.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.682 kcal (2) G-P(sol) polarization free energy of solvation -75.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds