Wall clock time and date at job start Mon Mar 30 2020 01:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31503 * 1 3 3 Si 1.86800 * 119.99981 * 2 1 4 4 H 1.48503 * 109.47535 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47373 * 299.99639 * 3 2 1 6 6 H 1.48503 * 109.47388 * 59.99812 * 3 2 1 7 7 C 1.37878 * 120.00374 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00388 * 180.02562 * 7 2 1 9 9 C 1.50696 * 119.99651 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47247 * 180.02562 * 9 7 2 11 11 N 1.46496 * 109.47621 * 179.97438 * 10 9 7 12 12 C 1.34772 * 120.00216 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00099 * 0.02562 * 12 11 10 14 14 C 1.50706 * 120.00061 * 179.97438 * 12 11 10 15 15 C 1.53235 * 110.83826 * 301.55753 * 14 12 11 16 16 C 1.55073 * 103.08132 * 90.92878 * 15 14 12 17 17 O 1.45040 * 107.08500 * 1.66297 * 16 15 14 18 18 C 1.42309 * 105.23162 * 26.99185 * 17 16 15 19 19 H 1.09004 * 109.43127 * 72.04175 * 18 17 16 20 20 C 1.51478 * 117.61059 * 198.02151 * 18 17 16 21 21 C 1.53759 * 107.35224 * 179.58079 * 20 18 17 22 22 C 1.52577 * 111.39809 * 302.55555 * 21 20 18 23 23 C 1.51845 * 110.76925 * 171.16065 * 14 12 11 24 24 H 0.97009 * 120.00330 * 0.02562 * 1 2 3 25 25 H 1.08997 * 109.47240 * 60.00171 * 9 7 2 26 26 H 1.08998 * 109.47249 * 299.99710 * 9 7 2 27 27 H 1.09000 * 109.47122 * 59.99150 * 10 9 7 28 28 H 1.09007 * 109.46960 * 299.99941 * 10 9 7 29 29 H 0.97003 * 119.99572 * 0.02562 * 11 10 9 30 30 H 1.08997 * 110.69558 * 209.32638 * 15 14 12 31 31 H 1.09001 * 110.69327 * 332.52946 * 15 14 12 32 32 H 1.08995 * 109.91466 * 242.30351 * 16 15 14 33 33 H 1.08995 * 110.07318 * 121.10654 * 16 15 14 34 34 H 1.09005 * 109.88232 * 299.04463 * 20 18 17 35 35 H 1.09003 * 109.87882 * 60.12121 * 20 18 17 36 36 H 1.09000 * 109.09193 * 63.04988 * 21 20 18 37 37 H 1.08998 * 109.09377 * 182.12400 * 21 20 18 38 38 H 1.08996 * 109.07430 * 175.26236 * 22 21 20 39 39 H 1.08995 * 109.07336 * 294.29434 * 22 21 20 40 40 H 1.09000 * 109.89493 * 63.10020 * 23 14 12 41 41 H 1.09001 * 109.89456 * 184.20628 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3150 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0018 11 7 1.5129 -4.9308 0.0024 12 6 2.1868 -6.0979 0.0031 13 8 3.3996 -6.0979 0.0036 14 6 1.4333 -7.4031 0.0043 15 6 0.5121 -7.4996 1.2250 16 6 -0.8212 -6.9009 0.7067 17 8 -0.6210 -6.5592 -0.6886 18 6 0.3923 -7.4459 -1.1490 19 1 -0.0181 -8.4520 -1.2355 20 6 1.1182 -7.0795 -2.4271 21 6 2.1568 -8.1808 -2.6965 22 6 3.1216 -8.3348 -1.5246 23 6 2.3790 -8.5710 -0.2133 24 1 -0.4851 0.8401 -0.0004 25 1 0.6247 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.8713 -3.6038 0.8922 28 1 2.8726 -3.6047 -0.8878 29 1 0.5429 -4.9308 0.0016 30 1 0.3770 -8.5389 1.5245 31 1 0.9047 -6.9073 2.0516 32 1 -1.0724 -6.0059 1.2757 33 1 -1.6215 -7.6353 0.7977 34 1 0.4098 -7.0277 -3.2539 35 1 1.6193 -6.1190 -2.3064 36 1 1.6396 -9.1265 -2.8592 37 1 2.7230 -7.9256 -3.5922 38 1 3.7853 -9.1775 -1.7181 39 1 3.7170 -7.4266 -1.4318 40 1 3.0895 -8.6316 0.6111 41 1 1.8120 -9.4992 -0.2843 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935338439.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:23 Heat of formation + Delta-G solvation = -122.112985 kcal Electronic energy + Delta-G solvation = -21743.251685 eV Core-core repulsion = 18621.252789 eV Total energy + Delta-G solvation = -3121.998896 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.60050 -39.48277 -37.50406 -36.34961 -34.79137 -33.74159 -31.71056 -30.61379 -29.69833 -26.98101 -24.47420 -23.74884 -23.12130 -22.53464 -21.77282 -20.57186 -18.60142 -17.86944 -17.21492 -16.89589 -16.81852 -16.52128 -16.18748 -15.87024 -15.36215 -15.02274 -14.73193 -14.53851 -14.34549 -13.92195 -13.77261 -13.25927 -13.04729 -12.99981 -12.91513 -12.71800 -12.53046 -12.30578 -12.23142 -12.10002 -11.70470 -11.54927 -11.52921 -11.40799 -11.02933 -10.64096 -10.61905 -10.48885 -9.95694 -8.26104 -6.37756 1.39428 1.39710 1.53550 1.59748 2.26004 2.44327 2.68056 3.08007 3.50458 3.52314 3.64562 3.91978 4.01242 4.04989 4.18227 4.22424 4.34393 4.38978 4.43143 4.48681 4.52908 4.74852 4.78944 4.80608 4.83357 4.89380 4.96732 5.00781 5.10011 5.16854 5.23389 5.26833 5.35637 5.47478 5.52385 5.62046 5.76200 5.84460 6.12955 6.66513 6.75358 7.30310 7.31883 8.86205 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027409 B = 0.004839 C = 0.004580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.325607 B = 5784.885362 C = 6111.425765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.007 3.993 3 Si 0.968 3.032 4 H -0.266 1.266 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.140 3.860 11 N -0.716 5.716 12 C 0.522 3.478 13 O -0.581 6.581 14 C -0.117 4.117 15 C -0.136 4.136 16 C 0.034 3.966 17 O -0.390 6.390 18 C 0.087 3.913 19 H 0.108 0.892 20 C -0.124 4.124 21 C -0.106 4.106 22 C -0.140 4.140 23 C -0.080 4.080 24 H 0.266 0.734 25 H 0.002 0.998 26 H 0.005 0.995 27 H 0.046 0.954 28 H 0.041 0.959 29 H 0.408 0.592 30 H 0.125 0.875 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.101 0.899 34 H 0.084 0.916 35 H 0.036 0.964 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.064 0.936 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.512 -21.197 -0.861 21.268 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.792 3.208 4 H -0.190 1.190 5 H -0.201 1.201 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.011 4.011 10 C 0.016 3.984 11 N -0.369 5.369 12 C 0.309 3.691 13 O -0.462 6.462 14 C -0.121 4.121 15 C -0.173 4.173 16 C -0.042 4.042 17 O -0.309 6.309 18 C 0.029 3.971 19 H 0.126 0.874 20 C -0.162 4.162 21 C -0.143 4.143 22 C -0.178 4.178 23 C -0.118 4.118 24 H 0.075 0.925 25 H 0.020 0.980 26 H 0.024 0.976 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.246 0.754 30 H 0.143 0.857 31 H 0.090 0.910 32 H 0.101 0.899 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.055 0.945 36 H 0.111 0.889 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.083 0.917 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.930 -20.903 -0.983 20.947 hybrid contribution 0.068 1.428 0.160 1.439 sum -0.862 -19.475 -0.823 19.511 Atomic orbital electron populations 1.70078 1.07645 1.28013 1.50868 1.25906 0.95805 1.03202 0.94243 0.85354 0.78885 0.78516 0.78021 1.18966 1.20095 1.19985 1.21471 0.93506 0.91835 1.51754 0.92335 1.19087 0.94111 0.91999 0.95918 1.21196 0.95011 0.82738 0.99437 1.46435 1.11454 1.05562 1.73432 1.20816 0.87586 0.85938 0.74724 1.90578 1.15552 1.88156 1.51925 1.22243 0.97489 0.93184 0.99171 1.22835 0.93463 1.04955 0.96077 1.23896 0.97726 1.01695 0.80869 1.88805 1.57421 1.58911 1.25813 1.22773 0.85789 0.95204 0.93306 0.87419 1.21556 0.98300 0.99332 0.96963 1.21469 0.96130 0.98526 0.98187 1.21609 0.98880 1.02854 0.94411 1.21002 0.97249 0.95541 0.97965 0.92465 0.97990 0.97640 0.93581 0.94055 0.75387 0.85703 0.91005 0.89902 0.88126 0.89774 0.94513 0.88911 0.91375 0.89995 0.93195 0.91749 0.87476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.87 13.28 21.45 0.28 -55.58 16 2 C 0.01 0.42 5.46 84.66 0.46 0.88 16 3 Si 0.97 44.63 29.54 68.60 2.03 46.65 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 7 C -0.55 -31.83 9.11 25.60 0.23 -31.60 16 8 H 0.06 3.33 7.74 -2.91 -0.02 3.31 16 9 C 0.03 1.42 5.09 29.85 0.15 1.57 16 10 C 0.14 6.55 5.61 86.38 0.48 7.04 16 11 N -0.72 -28.08 5.16 -463.06 -2.39 -30.46 16 12 C 0.52 18.59 4.47 87.66 0.39 18.99 16 13 O -0.58 -24.51 13.94 -3.03 -0.04 -24.55 16 14 C -0.12 -2.86 0.71 -52.39 -0.04 -2.90 16 15 C -0.14 -2.57 6.16 31.38 0.19 -2.38 16 16 C 0.03 0.68 6.85 72.69 0.50 1.17 16 17 O -0.39 -10.33 9.64 -148.98 -1.44 -11.77 16 18 C 0.09 1.96 2.46 30.93 0.08 2.04 16 19 H 0.11 1.71 7.96 -2.38 -0.02 1.69 16 20 C -0.12 -3.07 5.79 30.35 0.18 -2.89 16 21 C -0.11 -2.07 5.85 30.71 0.18 -1.89 16 22 C -0.14 -3.16 5.52 30.30 0.17 -3.00 16 23 C -0.08 -1.61 4.77 30.06 0.14 -1.47 16 24 H 0.27 14.97 8.31 -92.70 -0.77 14.20 16 25 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 26 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 27 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 28 H 0.04 2.01 8.14 -2.38 -0.02 1.99 16 29 H 0.41 15.25 5.47 -92.71 -0.51 14.74 16 30 H 0.12 1.44 8.05 -2.39 -0.02 1.43 16 31 H 0.07 1.56 7.91 -2.39 -0.02 1.55 16 32 H 0.08 1.78 8.11 -2.39 -0.02 1.76 16 33 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 34 H 0.08 1.89 8.14 -2.38 -0.02 1.87 16 35 H 0.04 1.20 6.59 -2.39 -0.02 1.19 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.05 1.58 5.52 -2.39 -0.01 1.57 16 40 H 0.06 1.43 8.13 -2.39 -0.02 1.41 16 41 H 0.11 1.34 8.02 -2.39 -0.02 1.32 16 Total: -1.00 -70.56 315.81 2.07 -68.49 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: 0.50 Total: 21.66 kcal Atomic # 6 Polarization: -17.55 SS G_CDS: 3.12 Total: -14.43 kcal Atomic # 7 Polarization: -83.94 SS G_CDS: -2.10 Total: -86.05 kcal Atomic # 8 Polarization: -34.85 SS G_CDS: -1.48 Total: -36.32 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -70.56 2.07 -68.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935338439.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.624 kcal (2) G-P(sol) polarization free energy of solvation -70.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds