Wall clock time and date at job start Mon Mar 30 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47324 * 119.99797 * 2 1 3 5 5 C 1.34777 * 119.99842 * 275.00128 * 4 2 1 6 6 O 1.21583 * 120.00079 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00282 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47143 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47177 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99688 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00231 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00141 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46763 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46866 * 120.00098 * 14 12 10 17 17 H 1.48493 * 109.47267 * 240.00428 * 14 12 10 18 18 C 1.50696 * 109.47165 * 239.99835 * 2 1 3 19 19 N 1.30839 * 125.96132 * 284.97840 * 18 2 1 20 20 C 1.33236 * 109.82829 * 180.02562 * 19 18 2 21 21 N 1.30707 * 108.95130 * 359.97438 * 20 19 18 22 22 N 1.34432 * 125.96525 * 105.00102 * 18 2 1 23 23 C 1.46499 * 126.82005 * 0.23890 * 22 18 2 24 24 H 1.08993 * 109.47025 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46713 * 300.00209 * 1 2 3 26 26 H 1.08991 * 109.47085 * 60.00068 * 1 2 3 27 27 H 0.96997 * 120.00584 * 94.99905 * 4 2 1 28 28 H 0.97005 * 120.00046 * 0.02562 * 7 5 4 29 29 H 1.08995 * 109.47063 * 300.00058 * 8 7 5 30 30 H 1.09004 * 109.46759 * 59.99995 * 8 7 5 31 31 H 1.09011 * 109.46977 * 300.00245 * 9 8 7 32 32 H 1.08997 * 109.47086 * 60.00014 * 9 8 7 33 33 H 0.97001 * 119.99905 * 179.97438 * 13 12 10 34 34 H 1.08005 * 125.52502 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47448 * 269.71499 * 23 22 18 36 36 H 1.09003 * 109.46707 * 29.71362 * 23 22 18 37 37 H 1.09001 * 109.46877 * 149.70832 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1617 2.4115 7 7 2.5959 -0.6535 3.4577 8 6 2.7363 0.0775 4.7195 9 6 3.2607 -0.8687 5.8015 10 6 3.4046 -0.1170 7.0996 11 1 3.1481 0.9310 7.1479 12 6 3.8636 -0.7670 8.2255 13 7 4.1763 -2.0431 8.1665 14 14 4.0426 0.1651 9.8345 15 1 3.6287 1.5775 9.6369 16 1 3.1813 -0.4627 10.8686 17 1 5.4594 0.1213 10.2769 18 6 2.0323 -0.7104 -1.2304 19 7 2.0304 -2.0042 -1.4252 20 6 2.5478 -2.2820 -2.6212 21 7 2.8871 -1.1639 -3.2069 22 7 2.5610 -0.1255 -2.3192 23 6 2.7624 1.3095 -2.5346 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.2491 -1.6317 1.1527 28 1 2.8266 -1.5947 3.4142 29 1 3.4380 0.9008 4.5863 30 1 1.7659 0.4722 5.0207 31 1 2.5592 -1.6925 5.9348 32 1 4.2311 -1.2631 5.5001 33 1 4.4996 -2.5003 8.9586 34 1 2.6666 -3.2707 -3.0393 35 1 1.8781 1.7332 -3.0103 36 1 2.9299 1.8007 -1.5760 37 1 3.6293 1.4622 -3.1774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001116739476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:59 Heat of formation + Delta-G solvation = 51.943077 kcal Electronic energy + Delta-G solvation = -19672.750529 eV Core-core repulsion = 16487.051678 eV Total energy + Delta-G solvation = -3185.698851 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.46283 -39.70114 -36.07739 -34.66206 -34.36770 -32.89840 -31.73165 -30.22574 -29.01293 -27.63340 -24.99980 -24.00976 -22.38634 -21.20660 -20.63364 -20.21180 -18.42348 -17.02338 -16.54541 -16.31583 -16.10251 -15.18877 -15.11857 -14.51389 -14.44200 -14.01668 -13.73862 -13.51228 -13.46804 -13.34602 -12.84301 -12.45781 -12.27890 -12.01718 -11.57710 -11.17763 -11.04649 -10.61363 -10.33303 -10.32789 -10.08005 -10.01998 -9.88708 -9.56414 -9.24407 -9.19148 -8.49807 -8.28490 -6.08410 -4.11088 1.22652 1.91305 2.60214 3.01217 3.29129 3.36831 3.41948 3.46386 3.68577 4.17374 4.39656 4.44251 4.62334 4.71380 4.78232 4.93155 5.03770 5.17153 5.28812 5.44229 5.63916 5.92754 5.99944 6.13425 6.27947 6.36292 6.39155 6.48109 6.77037 6.96838 7.20109 7.57464 7.64170 7.77688 7.90757 8.25361 8.38881 8.89525 8.96305 9.53721 11.03272 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.003100 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.192822 B = 9031.314269 C = 9288.302959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.248 3.752 3 H 0.106 0.894 4 N -0.742 5.742 5 C 0.703 3.297 6 O -0.599 6.599 7 N -0.735 5.735 8 C 0.140 3.860 9 C 0.012 3.988 10 C -0.520 4.520 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.283 1.283 17 H -0.284 1.284 18 C 0.273 3.727 19 N -0.534 5.534 20 C 0.201 3.799 21 N -0.320 5.320 22 N -0.373 5.373 23 C 0.090 3.910 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.405 0.595 28 H 0.395 0.605 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.023 0.977 32 H 0.022 0.978 33 H 0.261 0.739 34 H 0.220 0.780 35 H 0.084 0.916 36 H 0.097 0.903 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.596 2.143 -21.716 22.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.139 3.861 3 H 0.124 0.876 4 N -0.400 5.400 5 C 0.403 3.597 6 O -0.478 6.478 7 N -0.388 5.388 8 C 0.018 3.982 9 C -0.026 4.026 10 C -0.559 4.559 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.533 5.533 14 Si 0.724 3.276 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C -0.005 4.005 19 N -0.261 5.261 20 C -0.102 4.102 21 N -0.148 5.148 22 N -0.163 5.163 23 C -0.052 4.052 24 H 0.088 0.912 25 H 0.099 0.901 26 H 0.082 0.918 27 H 0.240 0.760 28 H 0.228 0.772 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.236 0.764 35 H 0.102 0.898 36 H 0.115 0.885 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.553 3.004 -22.030 22.695 hybrid contribution 0.419 -0.429 0.816 1.013 sum -4.134 2.575 -21.214 21.766 Atomic orbital electron populations 1.22183 0.92683 1.03620 1.03201 1.18952 0.94754 0.94937 0.77490 0.87608 1.45032 1.72807 1.14211 1.07972 1.15971 0.78524 0.85058 0.80185 1.90883 1.57820 1.14367 1.84701 1.45536 1.69369 1.14104 1.09774 1.21619 1.00466 0.95579 0.80569 1.19340 0.96638 0.94666 0.91933 1.21084 1.44213 0.96649 0.93932 0.92158 1.25000 0.95228 0.94918 0.99198 1.69969 1.44620 1.09179 1.29515 0.86460 0.77712 0.80120 0.83286 1.19567 1.20950 1.20973 1.24427 0.95059 0.89611 0.91398 1.70413 1.24733 1.12186 1.18814 1.26007 0.96002 0.98510 0.89654 1.78072 1.25011 0.95560 1.16147 1.50252 1.45357 1.08106 1.12611 1.22081 1.04221 0.74334 1.04609 0.91159 0.90052 0.91806 0.75971 0.77158 0.92739 0.92627 0.95877 0.95953 0.92912 0.76410 0.89755 0.88499 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 9.47 37.16 0.35 -1.23 16 2 C 0.25 2.76 2.95 -69.09 -0.20 2.56 16 3 H 0.11 1.16 6.23 -51.93 -0.32 0.84 16 4 N -0.74 -9.64 5.07 -59.82 -0.30 -9.94 16 5 C 0.70 11.82 8.53 -86.92 -0.74 11.08 16 6 O -0.60 -11.91 16.01 5.29 0.08 -11.82 16 7 N -0.73 -12.81 5.56 -65.22 -0.36 -13.18 16 8 C 0.14 2.96 5.61 -4.04 -0.02 2.94 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C -0.52 -14.35 9.11 -34.44 -0.31 -14.67 16 11 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.09 13.29 55.43 0.74 -25.36 16 14 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 15 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 16 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C 0.27 3.04 6.78 -155.69 -1.06 1.98 16 19 N -0.53 -6.30 10.88 -11.97 -0.13 -6.43 16 20 C 0.20 2.10 13.03 -91.82 -1.20 0.90 16 21 N -0.32 -3.65 12.70 29.29 0.37 -3.28 16 22 N -0.37 -3.83 4.04 -65.10 -0.26 -4.09 16 23 C 0.09 0.56 11.29 59.85 0.68 1.23 16 24 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 25 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.41 4.84 8.36 -40.82 -0.34 4.50 16 28 H 0.40 6.07 8.49 -40.82 -0.35 5.72 16 29 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 31 H 0.02 0.59 8.14 -51.92 -0.42 0.17 16 32 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.22 1.43 8.06 -52.48 -0.42 1.01 16 35 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.10 0.51 6.97 -51.93 -0.36 0.15 16 37 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 LS Contribution 323.14 15.07 4.87 4.87 Total: -1.00 -33.92 323.14 -7.90 -41.83 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.14 Total: 4.64 kcal Atomic # 6 Polarization: 9.22 SS G_CDS: -2.75 Total: 6.47 kcal Atomic # 7 Polarization: -62.33 SS G_CDS: 0.05 Total: -62.28 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.92 -7.90 -41.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116739476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.772 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds