Wall clock time and date at job start Mon Mar 30 2020 00:36:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47245 * 2 1 4 4 N 1.46497 * 109.47324 * 119.99797 * 2 1 3 5 5 C 1.34777 * 119.99842 * 275.00128 * 4 2 1 6 6 O 1.21583 * 120.00079 * 359.97438 * 5 4 2 7 7 N 1.34779 * 120.00039 * 179.97438 * 5 4 2 8 8 C 1.46502 * 120.00282 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47143 * 180.02562 * 8 7 5 10 10 C 1.50698 * 109.47177 * 180.02562 * 9 8 7 11 11 H 1.08002 * 119.99688 * 359.97438 * 10 9 8 12 12 C 1.37874 * 120.00231 * 179.97438 * 10 9 8 13 13 N 1.31516 * 119.99869 * 0.02562 * 12 10 9 14 14 Si 1.86801 * 120.00141 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46763 * 0.02562 * 14 12 10 16 16 H 1.48508 * 109.46866 * 120.00098 * 14 12 10 17 17 H 1.48493 * 109.47267 * 240.00428 * 14 12 10 18 18 C 1.50696 * 109.47165 * 239.99835 * 2 1 3 19 19 N 1.30839 * 125.96132 * 284.97840 * 18 2 1 20 20 C 1.33236 * 109.82829 * 180.02562 * 19 18 2 21 21 N 1.30707 * 108.95130 * 359.97438 * 20 19 18 22 22 N 1.34432 * 125.96525 * 105.00102 * 18 2 1 23 23 C 1.46499 * 126.82005 * 0.23890 * 22 18 2 24 24 H 1.08993 * 109.47025 * 180.02562 * 1 2 3 25 25 H 1.09003 * 109.46713 * 300.00209 * 1 2 3 26 26 H 1.08991 * 109.47085 * 60.00068 * 1 2 3 27 27 H 0.96997 * 120.00584 * 94.99905 * 4 2 1 28 28 H 0.97005 * 120.00046 * 0.02562 * 7 5 4 29 29 H 1.08995 * 109.47063 * 300.00058 * 8 7 5 30 30 H 1.09004 * 109.46759 * 59.99995 * 8 7 5 31 31 H 1.09011 * 109.46977 * 300.00245 * 9 8 7 32 32 H 1.08997 * 109.47086 * 60.00014 * 9 8 7 33 33 H 0.97001 * 119.99905 * 179.97438 * 13 12 10 34 34 H 1.08005 * 125.52502 * 180.02562 * 20 19 18 35 35 H 1.08995 * 109.47448 * 269.71499 * 23 22 18 36 36 H 1.09003 * 109.46707 * 29.71362 * 23 22 18 37 37 H 1.09001 * 109.46877 * 149.70832 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 1.1962 5 6 2.1471 -0.0181 2.3571 6 8 1.8583 1.1617 2.4115 7 7 2.5959 -0.6535 3.4577 8 6 2.7363 0.0775 4.7195 9 6 3.2607 -0.8687 5.8015 10 6 3.4046 -0.1170 7.0996 11 1 3.1481 0.9310 7.1479 12 6 3.8636 -0.7670 8.2255 13 7 4.1763 -2.0431 8.1665 14 14 4.0426 0.1651 9.8345 15 1 3.6287 1.5775 9.6369 16 1 3.1813 -0.4627 10.8686 17 1 5.4594 0.1213 10.2769 18 6 2.0323 -0.7104 -1.2304 19 7 2.0304 -2.0042 -1.4252 20 6 2.5478 -2.2820 -2.6212 21 7 2.8871 -1.1639 -3.2069 22 7 2.5610 -0.1255 -2.3192 23 6 2.7624 1.3095 -2.5346 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 2.2491 -1.6317 1.1527 28 1 2.8266 -1.5947 3.4142 29 1 3.4380 0.9008 4.5863 30 1 1.7659 0.4722 5.0207 31 1 2.5592 -1.6925 5.9348 32 1 4.2311 -1.2631 5.5001 33 1 4.4996 -2.5003 8.9586 34 1 2.6666 -3.2707 -3.0393 35 1 1.8781 1.7332 -3.0103 36 1 2.9299 1.8007 -1.5760 37 1 3.6293 1.4622 -3.1774 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001116739476.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:36:59 Heat of formation + Delta-G solvation = 28.143069 kcal Electronic energy + Delta-G solvation = -19673.782575 eV Core-core repulsion = 16487.051678 eV Total energy + Delta-G solvation = -3186.730897 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -43.26044 -41.03983 -37.29089 -36.24053 -35.09772 -34.80331 -32.89449 -31.46043 -30.44185 -28.25358 -26.74692 -25.12436 -23.24138 -22.88098 -21.96332 -21.19056 -19.65879 -18.43112 -17.91652 -17.45590 -17.06556 -16.59991 -16.47031 -15.92229 -15.69325 -15.19620 -15.08141 -14.60875 -14.33528 -14.25395 -14.10657 -13.83096 -13.24896 -13.17473 -12.94236 -12.82930 -12.48630 -12.41700 -12.20694 -11.65567 -11.48029 -11.21659 -11.14624 -10.83968 -10.68318 -10.59042 -10.41050 -9.79349 -8.21770 -6.31848 0.41123 1.18328 1.43089 1.44097 1.57075 1.70072 1.92951 2.14099 2.43288 2.83724 3.13356 3.30674 3.56226 3.67708 4.04825 4.05661 4.33603 4.45151 4.49620 4.56836 4.61377 4.64690 4.80083 4.90912 5.16613 5.17358 5.33366 5.37381 5.40471 5.53281 5.62830 5.66473 5.81196 5.99243 6.19491 6.82156 6.97547 7.06553 7.37551 7.54923 8.90397 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039251 B = 0.003100 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 713.192822 B = 9031.314269 C = 9288.302959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.248 3.752 3 H 0.110 0.890 4 N -0.727 5.727 5 C 0.706 3.294 6 O -0.628 6.628 7 N -0.733 5.733 8 C 0.161 3.839 9 C 0.022 3.978 10 C -0.543 4.543 11 H 0.061 0.939 12 C 0.006 3.994 13 N -0.928 5.928 14 Si 0.965 3.035 15 H -0.264 1.264 16 H -0.278 1.278 17 H -0.278 1.278 18 C 0.266 3.734 19 N -0.553 5.553 20 C 0.196 3.804 21 N -0.340 5.340 22 N -0.372 5.372 23 C 0.079 3.921 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.086 0.914 27 H 0.412 0.588 28 H 0.406 0.594 29 H 0.046 0.954 30 H 0.048 0.952 31 H 0.008 0.992 32 H 0.007 0.993 33 H 0.265 0.735 34 H 0.249 0.751 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.788 2.723 -22.386 23.054 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.140 3.860 3 H 0.128 0.872 4 N -0.385 5.385 5 C 0.406 3.594 6 O -0.509 6.509 7 N -0.387 5.387 8 C 0.037 3.963 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.079 0.921 12 C -0.193 4.193 13 N -0.568 5.568 14 Si 0.790 3.210 15 H -0.188 1.188 16 H -0.203 1.203 17 H -0.204 1.204 18 C -0.012 4.012 19 N -0.282 5.282 20 C -0.106 4.106 21 N -0.168 5.168 22 N -0.163 5.163 23 C -0.062 4.062 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.104 0.896 27 H 0.248 0.752 28 H 0.241 0.759 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.026 0.974 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.265 0.735 35 H 0.123 0.877 36 H 0.124 0.876 37 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -4.749 3.573 -22.753 23.516 hybrid contribution 0.480 -0.624 0.926 1.216 sum -4.269 2.949 -21.826 22.434 Atomic orbital electron populations 1.22109 0.91696 1.03560 1.03581 1.19075 0.95446 0.94858 0.76658 0.87238 1.44899 1.71761 1.14400 1.07410 1.15947 0.78118 0.84645 0.80675 1.90863 1.59068 1.15738 1.85276 1.45250 1.69869 1.14495 1.09078 1.21098 0.99469 0.94539 0.81164 1.19147 0.95492 0.94565 0.92380 1.21503 1.44284 0.97027 0.95367 0.92081 1.25880 0.94776 0.95794 1.02855 1.70073 1.45325 1.10656 1.30696 0.85391 0.77845 0.79011 0.78764 1.18772 1.20338 1.20373 1.24272 0.95614 0.89723 0.91583 1.70394 1.25422 1.12676 1.19665 1.26646 0.95185 0.99583 0.89157 1.78035 1.25691 0.96130 1.16954 1.50499 1.44506 1.09203 1.12056 1.22424 1.05688 0.72448 1.05599 0.91407 0.91479 0.89562 0.75176 0.75910 0.93515 0.93382 0.97351 0.97469 0.92620 0.73544 0.87698 0.87626 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.81 9.47 71.98 0.68 -2.13 16 2 C 0.25 5.19 2.95 44.24 0.13 5.32 16 3 H 0.11 2.25 6.23 -2.39 -0.01 2.23 16 4 N -0.73 -18.15 5.07 -461.42 -2.34 -20.49 16 5 C 0.71 23.29 8.53 179.05 1.53 24.81 16 6 O -0.63 -24.63 16.01 -3.98 -0.06 -24.70 16 7 N -0.73 -25.34 5.56 -478.53 -2.66 -28.00 16 8 C 0.16 6.85 5.61 86.38 0.48 7.33 16 9 C 0.02 1.09 5.09 29.85 0.15 1.24 16 10 C -0.54 -30.13 9.11 25.60 0.23 -29.90 16 11 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 12 C 0.01 0.31 5.46 84.65 0.46 0.77 16 13 N -0.93 -54.40 13.29 21.45 0.28 -54.12 16 14 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 15 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 16 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 17 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 18 C 0.27 5.53 6.78 138.22 0.94 6.46 16 19 N -0.55 -12.29 10.88 -191.78 -2.09 -14.37 16 20 C 0.20 3.79 13.03 180.77 2.36 6.15 16 21 N -0.34 -7.24 12.70 -61.25 -0.78 -8.01 16 22 N -0.37 -7.03 4.04 -359.87 -1.45 -8.48 16 23 C 0.08 0.83 11.29 127.77 1.44 2.27 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.41 9.38 8.36 -92.71 -0.77 8.61 16 28 H 0.41 12.31 8.49 -92.70 -0.79 11.52 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 32 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 34 H 0.25 2.76 8.06 -2.91 -0.02 2.74 16 35 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 36 H 0.11 0.92 6.97 -2.39 -0.02 0.91 16 37 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 Total: -1.00 -71.48 323.14 0.87 -70.61 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -0.46 Total: 19.78 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 8.41 Total: 22.34 kcal Atomic # 7 Polarization: -124.45 SS G_CDS: -9.03 Total: -133.48 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -71.48 0.87 -70.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001116739476.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.752 kcal (2) G-P(sol) polarization free energy of solvation -71.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.609 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds