Wall clock time and date at job start Mon Mar 30 2020 00:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.50699 * 109.46994 * 240.00416 * 2 1 3 5 5 O 1.21273 * 119.99977 * 325.03987 * 4 2 1 6 6 N 1.34781 * 119.99860 * 145.04223 * 4 2 1 7 7 C 1.46501 * 119.99506 * 184.98638 * 6 4 2 8 8 C 1.46495 * 120.00332 * 4.98416 * 6 4 2 9 9 N 1.46502 * 109.47458 * 120.00231 * 2 1 3 10 10 C 1.35309 * 125.86538 * 34.99940 * 9 2 1 11 11 C 1.35354 * 106.17287 * 179.97438 * 10 9 2 12 12 C 1.50699 * 126.74759 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47098 * 95.00012 * 12 11 10 14 14 C 1.36937 * 120.00328 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99793 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00268 * 179.71904 * 14 13 12 17 17 N 1.31619 * 119.99796 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00235 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47534 * 89.99531 * 18 16 14 20 20 H 1.48499 * 109.47170 * 210.00097 * 18 16 14 21 21 H 1.48507 * 109.46601 * 329.99333 * 18 16 14 22 22 N 1.33767 * 106.49608 * 0.25826 * 11 10 9 23 23 N 1.28633 * 108.88682 * 359.56979 * 22 11 10 24 24 H 1.09002 * 109.47357 * 175.73513 * 1 2 3 25 25 H 1.09002 * 109.47020 * 295.73061 * 1 2 3 26 26 H 1.09000 * 109.47516 * 55.72955 * 1 2 3 27 27 H 1.09001 * 109.47074 * 90.00087 * 7 6 4 28 28 H 1.09001 * 109.46714 * 209.99321 * 7 6 4 29 29 H 1.08994 * 109.47660 * 330.00046 * 7 6 4 30 30 H 1.09004 * 109.47142 * 55.25647 * 8 6 4 31 31 H 1.08992 * 109.47166 * 175.26005 * 8 6 4 32 32 H 1.09006 * 109.47298 * 295.26252 * 8 6 4 33 33 H 1.07996 * 126.91259 * 0.02562 * 10 9 2 34 34 H 1.08994 * 109.47669 * 334.99640 * 12 11 10 35 35 H 1.09000 * 109.47076 * 214.98992 * 12 11 10 36 36 H 0.97000 * 120.00300 * 359.97438 * 13 12 11 37 37 H 0.97002 * 119.99761 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.4228 -1.6608 -1.6732 6 7 3.1588 -0.2893 -1.8390 7 6 3.5879 -0.9087 -3.0953 8 6 3.9541 0.7876 -1.2440 9 7 2.0184 -0.6907 1.1961 10 6 1.4358 -1.7588 1.7882 11 6 2.2132 -2.0711 2.8513 12 6 1.9890 -3.1911 3.8343 13 7 2.7599 -4.3660 3.4201 14 6 2.7129 -5.5136 4.1658 15 1 2.1076 -5.5524 5.0595 16 6 3.4388 -6.6286 3.7702 17 7 3.3939 -7.7315 4.4872 18 14 4.4805 -6.5636 2.2211 19 1 5.8496 -6.1021 2.5641 20 1 4.5518 -7.9176 1.6153 21 1 3.8680 -5.6195 1.2521 22 7 3.2169 -1.1868 2.8607 23 7 3.0757 -0.3860 1.8640 24 1 -0.3634 -1.0248 -0.0764 25 1 -0.3633 0.4462 0.9258 26 1 -0.3634 0.5787 -0.8492 27 1 3.1500 -0.3686 -3.9348 28 1 4.6750 -0.8708 -3.1663 29 1 3.2581 -1.9472 -3.1198 30 1 4.2169 0.5220 -0.2200 31 1 4.8637 0.9320 -1.8269 32 1 3.3732 1.7100 -1.2424 33 1 0.5328 -2.2615 1.4751 34 1 0.9290 -3.4435 3.8620 35 1 2.3133 -2.8749 4.8257 36 1 3.3038 -4.3310 2.6177 37 1 3.9014 -8.5106 4.2110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119333101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:02 Heat of formation + Delta-G solvation = 94.808375 kcal Electronic energy + Delta-G solvation = -20531.191428 eV Core-core repulsion = 17347.351356 eV Total energy + Delta-G solvation = -3183.840072 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.22759 -40.35868 -36.10379 -35.75460 -34.74242 -32.02421 -30.85907 -30.34846 -28.66246 -27.03498 -26.22999 -24.61970 -22.42042 -22.03593 -20.96010 -19.64582 -18.03932 -17.89439 -17.17294 -16.68077 -15.73103 -15.66775 -14.70235 -14.48635 -14.24587 -13.99511 -13.61617 -13.41343 -13.10986 -13.03788 -12.99332 -12.79231 -12.66121 -12.40167 -12.25062 -11.92259 -11.55766 -11.10682 -10.86593 -10.77677 -10.56837 -10.12743 -9.80997 -9.55444 -9.16366 -9.00836 -8.86005 -7.19490 -5.72340 -3.07640 1.44511 1.72947 2.45588 2.67654 2.75988 3.44087 3.49050 3.50507 3.81211 3.94102 4.33267 4.59967 4.64600 4.65381 4.86485 4.92532 5.03935 5.14006 5.15951 5.18499 5.35544 5.37136 5.44788 5.55111 5.59042 5.70781 5.76819 5.93025 6.26103 6.56714 6.58513 6.68863 6.74602 7.55263 8.02151 8.46512 8.65216 9.24537 9.97406 10.17408 11.45859 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.005380 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.673193 B = 5203.658097 C = 5825.597313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.131 3.869 3 H 0.128 0.872 4 C 0.505 3.495 5 O -0.513 6.513 6 N -0.612 5.612 7 C 0.082 3.918 8 C 0.067 3.933 9 N -0.295 5.295 10 C -0.026 4.026 11 C -0.012 4.012 12 C 0.238 3.762 13 N -0.750 5.750 14 C -0.242 4.242 15 H 0.094 0.906 16 C 0.008 3.992 17 N -0.933 5.933 18 Si 0.882 3.118 19 H -0.283 1.283 20 H -0.290 1.290 21 H -0.279 1.279 22 N -0.247 5.247 23 N -0.098 5.098 24 H 0.086 0.914 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.191 0.809 34 H 0.047 0.953 35 H 0.049 0.951 36 H 0.362 0.638 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.204 21.780 -15.147 26.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.025 3.975 3 H 0.146 0.854 4 C 0.289 3.711 5 O -0.387 6.387 6 N -0.346 5.346 7 C -0.060 4.060 8 C -0.076 4.076 9 N -0.090 5.090 10 C -0.176 4.176 11 C -0.150 4.150 12 C 0.110 3.890 13 N -0.396 5.396 14 C -0.372 4.372 15 H 0.112 0.888 16 C -0.188 4.188 17 N -0.581 5.581 18 Si 0.712 3.288 19 H -0.210 1.210 20 H -0.217 1.217 21 H -0.206 1.206 22 N -0.115 5.115 23 N -0.077 5.077 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.107 0.893 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.098 0.902 30 H 0.097 0.903 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.208 0.792 34 H 0.065 0.935 35 H 0.067 0.933 36 H 0.195 0.805 37 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.381 22.068 -15.122 26.965 hybrid contribution 0.036 -0.624 -1.447 1.576 sum -3.345 21.444 -16.569 27.305 Atomic orbital electron populations 1.22084 0.89341 1.05641 1.04362 1.21634 0.98030 0.97694 0.80114 0.85426 1.20492 0.81150 0.84371 0.85076 1.90761 1.56535 1.26019 1.65367 1.47746 1.24191 1.37801 1.24894 1.21774 1.00303 0.99744 0.84224 1.22058 0.95919 0.89149 1.00452 1.47065 1.18705 1.22716 1.20560 1.23452 1.03922 0.93048 0.97212 1.22523 0.93319 0.99941 0.99175 1.18919 0.95834 0.81756 0.92524 1.42659 1.56195 1.10458 1.30272 1.19045 1.24316 0.87947 1.05897 0.88820 1.24605 1.00032 0.95791 0.98342 1.69696 1.45808 1.02773 1.39828 0.86578 0.81181 0.76625 0.84381 1.21001 1.21669 1.20576 1.75076 1.20864 1.03303 1.12231 1.78207 1.04020 1.22250 1.03187 0.89508 0.89940 0.89315 0.92245 0.90732 0.90182 0.90300 0.89755 0.91745 0.79171 0.93529 0.93347 0.80525 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 8.47 37.16 0.31 -0.87 16 2 C 0.13 1.30 3.05 -69.08 -0.21 1.09 16 3 H 0.13 0.91 6.50 -51.93 -0.34 0.57 16 4 C 0.51 6.08 6.99 -10.98 -0.08 6.00 16 5 O -0.51 -7.92 15.74 5.56 0.09 -7.83 16 6 N -0.61 -6.03 3.27 -189.52 -0.62 -6.65 16 7 C 0.08 0.69 10.46 59.85 0.63 1.32 16 8 C 0.07 0.47 9.46 59.84 0.57 1.04 16 9 N -0.29 -4.09 3.24 -55.89 -0.18 -4.27 16 10 C -0.03 -0.40 10.63 -17.05 -0.18 -0.58 16 11 C -0.01 -0.23 6.62 -82.78 -0.55 -0.78 16 12 C 0.24 4.92 6.82 -5.20 -0.04 4.89 16 13 N -0.75 -19.06 5.40 -61.09 -0.33 -19.39 16 14 C -0.24 -7.09 10.47 -15.06 -0.16 -7.24 16 15 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 16 C 0.01 0.25 5.50 -17.43 -0.10 0.15 16 17 N -0.93 -29.96 13.97 55.49 0.78 -29.18 16 18 Si 0.88 23.47 27.73 -169.99 -4.71 18.75 16 19 H -0.28 -7.53 7.11 56.52 0.40 -7.13 16 20 H -0.29 -7.69 7.11 56.52 0.40 -7.29 16 21 H -0.28 -7.25 6.52 56.52 0.37 -6.88 16 22 N -0.25 -4.76 12.41 33.29 0.41 -4.34 16 23 N -0.10 -1.59 12.30 60.35 0.74 -0.85 16 24 H 0.09 0.78 6.96 -51.93 -0.36 0.42 16 25 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.48 7.88 -51.93 -0.41 0.07 16 29 H 0.08 0.85 7.36 -51.93 -0.38 0.47 16 30 H 0.08 0.73 7.14 -51.93 -0.37 0.36 16 31 H 0.08 0.43 7.77 -51.93 -0.40 0.02 16 32 H 0.06 0.30 7.48 -51.93 -0.39 -0.09 16 33 H 0.19 2.48 7.42 -52.49 -0.39 2.09 16 34 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.36 9.40 5.52 -40.82 -0.23 9.17 16 37 H 0.26 7.93 8.31 -40.82 -0.34 7.59 16 LS Contribution 314.39 15.07 4.74 4.74 Total: -1.00 -37.14 314.39 -3.86 -41.00 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -4.97 Total: 3.02 kcal Atomic # 6 Polarization: 4.80 SS G_CDS: 0.20 Total: 5.01 kcal Atomic # 7 Polarization: -65.49 SS G_CDS: 0.80 Total: -64.69 kcal Atomic # 8 Polarization: -7.92 SS G_CDS: 0.09 Total: -7.83 kcal Atomic # 14 Polarization: 23.47 SS G_CDS: -4.71 Total: 18.75 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.14 -3.86 -41.00 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.811 kcal (2) G-P(sol) polarization free energy of solvation -37.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds