Wall clock time and date at job start Mon Mar 30 2020 00:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.46969 * 2 1 4 4 C 1.50699 * 109.46994 * 240.00416 * 2 1 3 5 5 O 1.21273 * 119.99977 * 325.03987 * 4 2 1 6 6 N 1.34781 * 119.99860 * 145.04223 * 4 2 1 7 7 C 1.46501 * 119.99506 * 184.98638 * 6 4 2 8 8 C 1.46495 * 120.00332 * 4.98416 * 6 4 2 9 9 N 1.46502 * 109.47458 * 120.00231 * 2 1 3 10 10 C 1.35309 * 125.86538 * 34.99940 * 9 2 1 11 11 C 1.35354 * 106.17287 * 179.97438 * 10 9 2 12 12 C 1.50699 * 126.74759 * 180.02562 * 11 10 9 13 13 N 1.46499 * 109.47098 * 95.00012 * 12 11 10 14 14 C 1.36937 * 120.00328 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99793 * 359.97438 * 14 13 12 16 16 C 1.38812 * 120.00268 * 179.71904 * 14 13 12 17 17 N 1.31619 * 119.99796 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00235 * 0.02562 * 16 14 13 19 19 H 1.48499 * 109.47534 * 89.99531 * 18 16 14 20 20 H 1.48499 * 109.47170 * 210.00097 * 18 16 14 21 21 H 1.48507 * 109.46601 * 329.99333 * 18 16 14 22 22 N 1.33767 * 106.49608 * 0.25826 * 11 10 9 23 23 N 1.28633 * 108.88682 * 359.56979 * 22 11 10 24 24 H 1.09002 * 109.47357 * 175.73513 * 1 2 3 25 25 H 1.09002 * 109.47020 * 295.73061 * 1 2 3 26 26 H 1.09000 * 109.47516 * 55.72955 * 1 2 3 27 27 H 1.09001 * 109.47074 * 90.00087 * 7 6 4 28 28 H 1.09001 * 109.46714 * 209.99321 * 7 6 4 29 29 H 1.08994 * 109.47660 * 330.00046 * 7 6 4 30 30 H 1.09004 * 109.47142 * 55.25647 * 8 6 4 31 31 H 1.08992 * 109.47166 * 175.26005 * 8 6 4 32 32 H 1.09006 * 109.47298 * 295.26252 * 8 6 4 33 33 H 1.07996 * 126.91259 * 0.02562 * 10 9 2 34 34 H 1.08994 * 109.47669 * 334.99640 * 12 11 10 35 35 H 1.09000 * 109.47076 * 214.98992 * 12 11 10 36 36 H 0.97000 * 120.00300 * 359.97438 * 13 12 11 37 37 H 0.97002 * 119.99761 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 1.4228 -1.6608 -1.6732 6 7 3.1588 -0.2893 -1.8390 7 6 3.5879 -0.9087 -3.0953 8 6 3.9541 0.7876 -1.2440 9 7 2.0184 -0.6907 1.1961 10 6 1.4358 -1.7588 1.7882 11 6 2.2132 -2.0711 2.8513 12 6 1.9890 -3.1911 3.8343 13 7 2.7599 -4.3660 3.4201 14 6 2.7129 -5.5136 4.1658 15 1 2.1076 -5.5524 5.0595 16 6 3.4388 -6.6286 3.7702 17 7 3.3939 -7.7315 4.4872 18 14 4.4805 -6.5636 2.2211 19 1 5.8496 -6.1021 2.5641 20 1 4.5518 -7.9176 1.6153 21 1 3.8680 -5.6195 1.2521 22 7 3.2169 -1.1868 2.8607 23 7 3.0757 -0.3860 1.8640 24 1 -0.3634 -1.0248 -0.0764 25 1 -0.3633 0.4462 0.9258 26 1 -0.3634 0.5787 -0.8492 27 1 3.1500 -0.3686 -3.9348 28 1 4.6750 -0.8708 -3.1663 29 1 3.2581 -1.9472 -3.1198 30 1 4.2169 0.5220 -0.2200 31 1 4.8637 0.9320 -1.8269 32 1 3.3732 1.7100 -1.2424 33 1 0.5328 -2.2615 1.4751 34 1 0.9290 -3.4435 3.8620 35 1 2.3133 -2.8749 4.8257 36 1 3.3038 -4.3310 2.6177 37 1 3.9014 -8.5106 4.2110 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119333101.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:01 Heat of formation + Delta-G solvation = 66.066142 kcal Electronic energy + Delta-G solvation = -20532.437785 eV Core-core repulsion = 17347.351356 eV Total energy + Delta-G solvation = -3185.086429 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.45942 -41.23676 -37.21650 -36.88293 -36.25171 -33.94019 -32.14170 -31.83719 -29.30515 -28.07053 -27.60446 -25.53908 -24.39067 -23.07550 -22.42020 -20.63242 -19.89559 -18.82077 -18.35328 -17.61229 -16.87948 -16.57740 -16.45846 -16.08972 -15.62960 -15.02968 -14.96028 -14.57292 -14.38974 -14.01051 -13.94453 -13.70765 -13.59320 -13.52831 -13.31891 -13.03375 -12.94669 -12.74979 -12.53209 -12.20715 -11.98494 -11.86537 -11.81108 -11.05457 -10.87592 -10.32806 -9.90799 -9.34883 -8.05428 -5.38285 0.34052 0.68832 1.30343 1.33881 1.34949 1.41257 1.67360 1.80999 2.43640 3.05695 3.12784 3.25502 3.40595 3.67730 3.77959 3.90910 4.10030 4.12421 4.27370 4.35235 4.38498 4.52722 4.60966 4.63102 4.76132 4.79093 4.84605 5.01216 5.05134 5.10244 5.25557 5.47244 5.72855 5.98476 6.18521 6.72203 7.02210 7.36312 7.77346 7.96632 9.15864 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.020588 B = 0.005380 C = 0.004805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.673193 B = 5203.658097 C = 5825.597313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.127 3.873 3 H 0.161 0.839 4 C 0.495 3.505 5 O -0.557 6.557 6 N -0.611 5.611 7 C 0.077 3.923 8 C 0.061 3.939 9 N -0.282 5.282 10 C -0.012 4.012 11 C -0.037 4.037 12 C 0.239 3.761 13 N -0.754 5.754 14 C -0.230 4.230 15 H 0.071 0.929 16 C -0.053 4.053 17 N -0.977 5.977 18 Si 0.946 3.054 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.269 1.269 22 N -0.284 5.284 23 N -0.092 5.092 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.113 0.887 27 H 0.079 0.921 28 H 0.095 0.905 29 H 0.052 0.948 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.094 0.906 33 H 0.214 0.786 34 H 0.066 0.934 35 H 0.042 0.958 36 H 0.360 0.640 37 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.317 24.341 -17.245 30.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.023 3.977 3 H 0.179 0.821 4 C 0.280 3.720 5 O -0.434 6.434 6 N -0.343 5.343 7 C -0.065 4.065 8 C -0.080 4.080 9 N -0.077 5.077 10 C -0.164 4.164 11 C -0.174 4.174 12 C 0.111 3.889 13 N -0.400 5.400 14 C -0.361 4.361 15 H 0.089 0.911 16 C -0.246 4.246 17 N -0.628 5.628 18 Si 0.775 3.225 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.195 1.195 22 N -0.152 5.152 23 N -0.071 5.071 24 H 0.090 0.910 25 H 0.115 0.885 26 H 0.132 0.868 27 H 0.098 0.902 28 H 0.114 0.886 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.125 0.875 32 H 0.113 0.887 33 H 0.231 0.769 34 H 0.084 0.916 35 H 0.060 0.940 36 H 0.192 0.808 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -3.481 24.714 -17.237 30.332 hybrid contribution 0.035 -1.279 -0.832 1.526 sum -3.446 23.435 -18.069 29.792 Atomic orbital electron populations 1.22151 0.87423 1.05343 1.06233 1.22109 0.99568 0.98453 0.77606 0.82147 1.20854 0.81477 0.84080 0.85591 1.90743 1.57963 1.27914 1.66746 1.47980 1.23457 1.37920 1.24990 1.21901 1.01747 0.98393 0.84451 1.22265 0.97135 0.89236 0.99379 1.47365 1.17543 1.21986 1.20813 1.23688 1.03898 0.92852 0.95920 1.22193 0.94725 1.00192 1.00337 1.18944 0.95996 0.81008 0.92914 1.42708 1.56777 1.10772 1.29737 1.19080 1.22719 0.89172 1.05098 0.91058 1.25304 1.01973 0.95650 1.01628 1.69841 1.47456 1.03617 1.41884 0.85545 0.79380 0.76721 0.80890 1.20842 1.21437 1.19499 1.75029 1.21931 1.04347 1.13875 1.78118 1.04597 1.21663 1.02717 0.91033 0.88501 0.86812 0.90229 0.88618 0.92952 0.92439 0.87544 0.88726 0.76929 0.91571 0.93977 0.80793 0.93183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 8.47 71.98 0.61 -1.25 16 2 C 0.13 2.13 3.05 44.24 0.13 2.27 16 3 H 0.16 1.61 6.50 -2.39 -0.02 1.59 16 4 C 0.50 10.87 6.99 87.66 0.61 11.48 16 5 O -0.56 -16.59 15.74 -3.01 -0.05 -16.63 16 6 N -0.61 -10.46 3.27 -871.91 -2.85 -13.31 16 7 C 0.08 1.14 10.46 127.77 1.34 2.47 16 8 C 0.06 0.65 9.46 127.77 1.21 1.86 16 9 N -0.28 -7.16 3.24 -330.74 -1.07 -8.23 16 10 C -0.01 -0.36 10.63 83.49 0.89 0.53 16 11 C -0.04 -1.33 6.62 41.60 0.28 -1.06 16 12 C 0.24 9.75 6.82 85.63 0.58 10.33 16 13 N -0.75 -38.09 5.40 -347.18 -1.87 -39.97 16 14 C -0.23 -13.57 10.47 84.03 0.88 -12.69 16 15 H 0.07 4.45 8.06 -2.91 -0.02 4.43 16 16 C -0.05 -3.27 5.50 84.86 0.47 -2.80 16 17 N -0.98 -63.85 13.97 21.65 0.30 -63.55 16 18 Si 0.95 48.80 27.73 68.60 1.90 50.70 16 19 H -0.28 -14.37 7.11 99.48 0.71 -13.67 16 20 H -0.29 -14.65 7.11 99.48 0.71 -13.94 16 21 H -0.27 -13.29 6.52 99.48 0.65 -12.64 16 22 N -0.28 -10.68 12.41 -48.60 -0.60 -11.29 16 23 N -0.09 -2.83 12.30 37.02 0.46 -2.38 16 24 H 0.07 1.13 6.96 -2.39 -0.02 1.11 16 25 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.11 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.10 0.98 7.88 -2.39 -0.02 0.96 16 29 H 0.05 1.08 7.36 -2.39 -0.02 1.07 16 30 H 0.06 0.90 7.14 -2.39 -0.02 0.89 16 31 H 0.11 0.67 7.77 -2.39 -0.02 0.65 16 32 H 0.09 0.45 7.48 -2.38 -0.02 0.43 16 33 H 0.21 5.05 7.42 -2.91 -0.02 5.02 16 34 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 36 H 0.36 18.36 5.52 -92.71 -0.51 17.85 16 37 H 0.26 16.11 8.31 -92.71 -0.77 15.34 16 Total: -1.00 -81.40 314.39 3.72 -77.67 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.52 Total: 15.84 kcal Atomic # 6 Polarization: 4.15 SS G_CDS: 7.00 Total: 11.14 kcal Atomic # 7 Polarization: -133.08 SS G_CDS: -5.64 Total: -138.72 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.05 Total: -16.63 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 1.90 Total: 50.70 kcal Total: -81.40 3.72 -77.67 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333101.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.740 kcal (2) G-P(sol) polarization free energy of solvation -81.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.674 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds