Wall clock time and date at job start Mon Mar 30 2020 00:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47452 * 2 1 4 4 C 1.50706 * 109.47096 * 119.99765 * 2 1 3 5 5 O 1.21284 * 119.99840 * 21.65656 * 4 2 1 6 6 N 1.34767 * 120.00206 * 201.65696 * 4 2 1 7 7 C 1.46500 * 120.00085 * 184.82181 * 6 4 2 8 8 C 1.46500 * 119.99838 * 4.81654 * 6 4 2 9 9 N 1.46500 * 109.47434 * 239.99632 * 2 1 3 10 10 C 1.35317 * 125.86445 * 324.71795 * 9 2 1 11 11 C 1.35349 * 106.17223 * 180.26298 * 10 9 2 12 12 C 1.50702 * 126.75169 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47373 * 94.99875 * 12 11 10 14 14 C 1.36931 * 120.00236 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00160 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00238 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99637 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47322 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46970 * 120.00153 * 18 16 14 21 21 H 1.48498 * 109.46805 * 240.00033 * 18 16 14 22 22 N 1.33768 * 106.49705 * 359.97438 * 11 10 9 23 23 N 1.28630 * 108.88912 * 359.97438 * 22 11 10 24 24 H 1.09000 * 109.47267 * 65.19966 * 1 2 3 25 25 H 1.09009 * 109.47338 * 185.19811 * 1 2 3 26 26 H 1.08998 * 109.47011 * 305.19689 * 1 2 3 27 27 H 1.09001 * 109.47364 * 89.99888 * 7 6 4 28 28 H 1.09001 * 109.46998 * 209.99857 * 7 6 4 29 29 H 1.08997 * 109.46786 * 329.99614 * 7 6 4 30 30 H 1.08998 * 109.47333 * 355.27605 * 8 6 4 31 31 H 1.09001 * 109.47018 * 115.27442 * 8 6 4 32 32 H 1.08999 * 109.47189 * 235.27190 * 8 6 4 33 33 H 1.07997 * 126.91373 * 0.22598 * 10 9 2 34 34 H 1.08996 * 109.47216 * 215.00023 * 12 11 10 35 35 H 1.09004 * 109.46919 * 334.99794 * 12 11 10 36 36 H 0.97000 * 119.99894 * 0.02562 * 13 12 11 37 37 H 0.97003 * 120.00075 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3141 -1.4946 1.8137 6 7 3.2796 -0.4742 1.6830 7 6 3.8057 -1.2412 2.8149 8 6 4.1095 0.5493 1.0428 9 7 2.0184 -0.6907 -1.1961 10 6 1.4387 -1.7622 -1.7851 11 6 2.2178 -2.0764 -2.8463 12 6 1.9964 -3.1997 -3.8263 13 7 1.2800 -2.6910 -4.9986 14 6 0.9650 -3.5364 -6.0286 15 1 1.2450 -4.5782 -5.9770 16 6 0.2856 -3.0545 -7.1392 17 7 -0.0552 -1.7848 -7.2022 18 14 -0.1434 -4.2078 -8.5446 19 1 0.3477 -5.5738 -8.2317 20 1 -1.6171 -4.2414 -8.7250 21 1 0.4973 -3.7250 -9.7942 22 7 3.2223 -1.1931 -2.8548 23 7 3.0748 -0.3851 -1.8649 24 1 -0.3634 0.4311 -0.9329 25 1 -0.3634 -1.0235 0.0931 26 1 -0.3633 0.5923 0.8398 27 1 4.3054 -2.1370 2.4460 28 1 4.5182 -0.6296 3.3684 29 1 2.9849 -1.5276 3.4724 30 1 3.5861 0.9510 0.1751 31 1 4.3068 1.3530 1.7522 32 1 5.0529 0.1056 0.7248 33 1 0.5364 -2.2657 -1.4711 34 1 2.9590 -3.6059 -4.1368 35 1 1.4067 -3.9844 -3.3523 36 1 1.0288 -1.7552 -5.0451 37 1 -0.5302 -1.4481 -7.9781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119333103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:05 Heat of formation + Delta-G solvation = 93.750031 kcal Electronic energy + Delta-G solvation = -20324.248611 eV Core-core repulsion = 17140.362645 eV Total energy + Delta-G solvation = -3183.885966 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.12074 -40.34484 -36.06107 -35.66458 -34.57665 -31.97262 -30.71724 -29.95762 -28.63574 -26.95317 -25.91645 -24.49632 -22.80654 -21.97911 -20.89707 -19.53765 -18.00432 -17.48707 -17.00144 -16.67300 -15.72844 -15.54102 -14.70961 -14.53938 -14.18658 -13.76288 -13.42091 -13.37174 -13.09024 -12.98809 -12.91432 -12.71827 -12.60543 -12.41471 -12.12652 -11.64973 -11.25623 -10.95946 -10.80866 -10.72471 -10.45219 -10.03384 -9.79904 -9.67369 -9.16306 -8.87935 -8.84201 -6.89532 -5.72005 -3.01453 1.53268 1.79365 2.50549 2.74900 2.88181 3.47381 3.52905 3.55319 3.86283 4.03316 4.37887 4.63927 4.72742 4.77563 4.87749 4.96154 5.18855 5.20654 5.29446 5.31632 5.41761 5.44297 5.48326 5.64109 5.71053 5.80470 5.94526 6.19275 6.39316 6.66663 6.68490 6.77033 6.78283 7.56357 7.74047 8.45216 8.77355 9.57244 10.12695 10.48941 11.50877 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038186 B = 0.003836 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.077368 B = 7297.590297 C = 7417.537721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.129 3.871 3 H 0.130 0.870 4 C 0.507 3.493 5 O -0.518 6.518 6 N -0.611 5.611 7 C 0.083 3.917 8 C 0.068 3.932 9 N -0.296 5.296 10 C -0.029 4.029 11 C -0.004 4.004 12 C 0.233 3.767 13 N -0.726 5.726 14 C -0.239 4.239 15 H 0.074 0.926 16 C -0.013 4.013 17 N -0.932 5.932 18 Si 0.909 3.091 19 H -0.279 1.279 20 H -0.292 1.292 21 H -0.292 1.292 22 N -0.245 5.245 23 N -0.098 5.098 24 H 0.083 0.917 25 H 0.084 0.916 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.189 0.811 34 H 0.040 0.960 35 H 0.038 0.962 36 H 0.385 0.615 37 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.204 6.050 21.602 23.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.023 3.977 3 H 0.148 0.852 4 C 0.291 3.709 5 O -0.392 6.392 6 N -0.344 5.344 7 C -0.059 4.059 8 C -0.074 4.074 9 N -0.092 5.092 10 C -0.179 4.179 11 C -0.142 4.142 12 C 0.104 3.896 13 N -0.370 5.370 14 C -0.370 4.370 15 H 0.092 0.908 16 C -0.209 4.209 17 N -0.581 5.581 18 Si 0.740 3.260 19 H -0.205 1.205 20 H -0.219 1.219 21 H -0.219 1.219 22 N -0.113 5.113 23 N -0.077 5.077 24 H 0.102 0.898 25 H 0.103 0.897 26 H 0.107 0.893 27 H 0.076 0.924 28 H 0.092 0.908 29 H 0.098 0.902 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.206 0.794 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.219 0.781 37 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 6.027 6.434 21.741 23.460 hybrid contribution -1.149 -0.748 -0.631 1.509 sum 4.878 5.686 21.109 22.400 Atomic orbital electron populations 1.22069 0.89230 1.05576 1.04451 1.21651 0.98150 0.97881 0.79996 0.85197 1.20545 0.81748 0.82895 0.85691 1.90737 1.55423 1.34934 1.58138 1.47741 1.14184 1.38795 1.33715 1.21703 0.99964 0.95881 0.88383 1.22068 0.96364 0.90614 0.98402 1.47056 1.19090 1.22441 1.20619 1.23392 1.03212 0.93343 0.97956 1.22459 0.93188 1.00541 0.97982 1.18956 0.96354 0.88924 0.85407 1.42306 1.67580 1.10440 1.16721 1.19283 1.29830 0.92079 0.95784 0.90826 1.24754 1.01409 0.96172 0.98581 1.69693 1.45190 1.12778 1.30393 0.86087 0.77664 0.79817 0.82441 1.20461 1.21918 1.21868 1.75067 1.21649 1.02870 1.11743 1.78193 1.04132 1.21938 1.03425 0.89821 0.89665 0.89329 0.92359 0.90787 0.90171 0.89445 0.91588 0.90976 0.79374 0.94275 0.94394 0.78095 0.93587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 8.32 37.16 0.31 -1.12 16 2 C 0.13 1.37 2.75 -69.08 -0.19 1.18 16 3 H 0.13 1.04 6.38 -51.93 -0.33 0.71 16 4 C 0.51 5.87 7.14 -10.99 -0.08 5.79 16 5 O -0.52 -7.38 15.49 5.55 0.09 -7.29 16 6 N -0.61 -5.85 3.27 -189.52 -0.62 -6.47 16 7 C 0.08 0.65 10.52 59.85 0.63 1.28 16 8 C 0.07 0.51 10.51 59.85 0.63 1.14 16 9 N -0.30 -4.27 3.24 -55.89 -0.18 -4.46 16 10 C -0.03 -0.47 10.64 -17.05 -0.18 -0.65 16 11 C 0.00 -0.09 6.62 -82.78 -0.55 -0.63 16 12 C 0.23 5.00 6.82 -5.19 -0.04 4.96 16 13 N -0.73 -19.18 5.59 -61.08 -0.34 -19.52 16 14 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 15 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 16 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 17 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 18 Si 0.91 22.66 29.55 -169.99 -5.02 17.63 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 21 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 22 N -0.25 -4.92 12.41 33.29 0.41 -4.51 16 23 N -0.10 -1.65 12.25 60.35 0.74 -0.91 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 25 H 0.08 0.87 7.00 -51.92 -0.36 0.51 16 26 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.38 8.07 -51.93 -0.42 -0.04 16 29 H 0.08 0.69 7.36 -51.93 -0.38 0.30 16 30 H 0.09 0.71 4.49 -51.93 -0.23 0.48 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.19 2.59 7.45 -52.49 -0.39 2.20 16 34 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.39 10.93 7.66 -40.82 -0.31 10.62 16 37 H 0.25 7.55 8.31 -40.82 -0.34 7.22 16 LS Contribution 316.53 15.07 4.77 4.77 Total: -1.00 -35.33 316.53 -4.08 -39.42 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -4.94 Total: 4.92 kcal Atomic # 6 Polarization: 4.22 SS G_CDS: 0.29 Total: 4.51 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: 0.73 Total: -63.95 kcal Atomic # 8 Polarization: -7.38 SS G_CDS: 0.09 Total: -7.29 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.63 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -35.33 -4.08 -39.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.165 kcal (2) G-P(sol) polarization free energy of solvation -35.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds