Wall clock time and date at job start Mon Mar 30 2020 00:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47452 * 2 1 4 4 C 1.50706 * 109.47096 * 119.99765 * 2 1 3 5 5 O 1.21284 * 119.99840 * 21.65656 * 4 2 1 6 6 N 1.34767 * 120.00206 * 201.65696 * 4 2 1 7 7 C 1.46500 * 120.00085 * 184.82181 * 6 4 2 8 8 C 1.46500 * 119.99838 * 4.81654 * 6 4 2 9 9 N 1.46500 * 109.47434 * 239.99632 * 2 1 3 10 10 C 1.35317 * 125.86445 * 324.71795 * 9 2 1 11 11 C 1.35349 * 106.17223 * 180.26298 * 10 9 2 12 12 C 1.50702 * 126.75169 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.47373 * 94.99875 * 12 11 10 14 14 C 1.36931 * 120.00236 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00160 * 359.97438 * 14 13 12 16 16 C 1.38817 * 120.00238 * 179.97438 * 14 13 12 17 17 N 1.31619 * 119.99637 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00092 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47322 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46970 * 120.00153 * 18 16 14 21 21 H 1.48498 * 109.46805 * 240.00033 * 18 16 14 22 22 N 1.33768 * 106.49705 * 359.97438 * 11 10 9 23 23 N 1.28630 * 108.88912 * 359.97438 * 22 11 10 24 24 H 1.09000 * 109.47267 * 65.19966 * 1 2 3 25 25 H 1.09009 * 109.47338 * 185.19811 * 1 2 3 26 26 H 1.08998 * 109.47011 * 305.19689 * 1 2 3 27 27 H 1.09001 * 109.47364 * 89.99888 * 7 6 4 28 28 H 1.09001 * 109.46998 * 209.99857 * 7 6 4 29 29 H 1.08997 * 109.46786 * 329.99614 * 7 6 4 30 30 H 1.08998 * 109.47333 * 355.27605 * 8 6 4 31 31 H 1.09001 * 109.47018 * 115.27442 * 8 6 4 32 32 H 1.08999 * 109.47189 * 235.27190 * 8 6 4 33 33 H 1.07997 * 126.91373 * 0.22598 * 10 9 2 34 34 H 1.08996 * 109.47216 * 215.00023 * 12 11 10 35 35 H 1.09004 * 109.46919 * 334.99794 * 12 11 10 36 36 H 0.97000 * 119.99894 * 0.02562 * 13 12 11 37 37 H 0.97003 * 120.00075 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 1.3141 -1.4946 1.8137 6 7 3.2796 -0.4742 1.6830 7 6 3.8057 -1.2412 2.8149 8 6 4.1095 0.5493 1.0428 9 7 2.0184 -0.6907 -1.1961 10 6 1.4387 -1.7622 -1.7851 11 6 2.2178 -2.0764 -2.8463 12 6 1.9964 -3.1997 -3.8263 13 7 1.2800 -2.6910 -4.9986 14 6 0.9650 -3.5364 -6.0286 15 1 1.2450 -4.5782 -5.9770 16 6 0.2856 -3.0545 -7.1392 17 7 -0.0552 -1.7848 -7.2022 18 14 -0.1434 -4.2078 -8.5446 19 1 0.3477 -5.5738 -8.2317 20 1 -1.6171 -4.2414 -8.7250 21 1 0.4973 -3.7250 -9.7942 22 7 3.2223 -1.1931 -2.8548 23 7 3.0748 -0.3851 -1.8649 24 1 -0.3634 0.4311 -0.9329 25 1 -0.3634 -1.0235 0.0931 26 1 -0.3633 0.5923 0.8398 27 1 4.3054 -2.1370 2.4460 28 1 4.5182 -0.6296 3.3684 29 1 2.9849 -1.5276 3.4724 30 1 3.5861 0.9510 0.1751 31 1 4.3068 1.3530 1.7522 32 1 5.0529 0.1056 0.7248 33 1 0.5364 -2.2657 -1.4711 34 1 2.9590 -3.6059 -4.1368 35 1 1.4067 -3.9844 -3.3523 36 1 1.0288 -1.7552 -5.0451 37 1 -0.5302 -1.4481 -7.9781 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001119333103.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:04 Heat of formation + Delta-G solvation = 67.221493 kcal Electronic energy + Delta-G solvation = -20325.398975 eV Core-core repulsion = 17140.362645 eV Total energy + Delta-G solvation = -3185.036329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -44.42433 -41.23380 -37.07003 -36.85412 -36.18993 -33.79252 -31.85347 -31.68723 -29.30748 -27.83753 -27.53768 -25.51440 -24.74971 -23.07616 -22.35748 -20.53433 -19.35030 -18.82161 -18.32535 -17.61777 -16.81923 -16.56136 -16.46668 -15.93699 -15.50853 -15.13864 -14.93105 -14.50909 -14.27598 -14.03422 -13.76043 -13.63791 -13.49437 -13.34962 -13.09943 -13.04922 -12.79696 -12.69788 -12.39348 -12.05740 -12.02467 -11.84110 -11.72698 -10.97292 -10.83986 -10.27210 -9.90429 -9.01996 -7.92779 -5.23293 0.39855 0.67229 1.40021 1.51467 1.52428 1.62855 1.71836 1.79392 2.60113 3.05776 3.15119 3.36455 3.45381 3.64731 3.92299 4.11565 4.15362 4.21962 4.31411 4.38352 4.40189 4.53877 4.62282 4.63540 4.79843 4.81655 4.86383 5.02068 5.08452 5.12466 5.24690 5.50458 5.52092 5.99815 6.26960 6.72759 7.34071 7.40679 8.04129 8.30900 9.31324 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.038186 B = 0.003836 C = 0.003774 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.077368 B = 7297.590297 C = 7417.537721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.123 3.877 3 H 0.160 0.840 4 C 0.502 3.498 5 O -0.551 6.551 6 N -0.609 5.609 7 C 0.079 3.921 8 C 0.065 3.935 9 N -0.282 5.282 10 C -0.016 4.016 11 C -0.031 4.031 12 C 0.236 3.764 13 N -0.738 5.738 14 C -0.245 4.245 15 H 0.084 0.916 16 C -0.075 4.075 17 N -0.972 5.972 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.292 1.292 21 H -0.295 1.295 22 N -0.285 5.285 23 N -0.091 5.091 24 H 0.083 0.917 25 H 0.074 0.926 26 H 0.113 0.887 27 H 0.052 0.948 28 H 0.105 0.895 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.098 0.902 32 H 0.070 0.930 33 H 0.212 0.788 34 H 0.033 0.967 35 H 0.058 0.942 36 H 0.372 0.628 37 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.333 6.192 22.932 24.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.019 3.981 3 H 0.177 0.823 4 C 0.287 3.713 5 O -0.427 6.427 6 N -0.342 5.342 7 C -0.062 4.062 8 C -0.077 4.077 9 N -0.077 5.077 10 C -0.167 4.167 11 C -0.168 4.168 12 C 0.108 3.892 13 N -0.381 5.381 14 C -0.376 4.376 15 H 0.102 0.898 16 C -0.267 4.267 17 N -0.622 5.622 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.219 1.219 21 H -0.223 1.223 22 N -0.153 5.153 23 N -0.070 5.070 24 H 0.102 0.898 25 H 0.093 0.907 26 H 0.132 0.868 27 H 0.071 0.929 28 H 0.124 0.876 29 H 0.089 0.911 30 H 0.098 0.902 31 H 0.116 0.884 32 H 0.088 0.912 33 H 0.228 0.772 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.203 0.797 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.210 6.569 23.117 24.822 hybrid contribution -1.115 -0.737 -0.875 1.598 sum 5.095 5.833 22.242 23.552 Atomic orbital electron populations 1.22106 0.88054 1.05423 1.05511 1.22080 0.99126 0.98800 0.78072 0.82286 1.20644 0.82268 0.82636 0.85760 1.90725 1.56441 1.36367 1.59207 1.47938 1.13676 1.38789 1.33747 1.21838 1.00194 0.96268 0.87944 1.22222 0.95622 0.90876 0.98974 1.47331 1.17937 1.21622 1.20855 1.23612 1.03093 0.93242 0.96790 1.22205 0.94557 1.00979 0.99089 1.18957 0.95567 0.90163 0.84543 1.42488 1.68029 1.09637 1.17932 1.19730 1.28813 0.92765 0.96280 0.89842 1.25623 1.02041 0.97737 1.01344 1.69858 1.46546 1.14748 1.31074 0.85000 0.77060 0.78509 0.78720 1.18665 1.21858 1.22279 1.75015 1.22868 1.03938 1.13437 1.78090 1.04750 1.21213 1.02960 0.89829 0.90750 0.86816 0.92921 0.87605 0.91079 0.90204 0.88372 0.91160 0.77175 0.94940 0.92449 0.79681 0.94031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 8.32 71.98 0.60 -1.91 16 2 C 0.12 2.35 2.75 44.25 0.12 2.48 16 3 H 0.16 2.10 6.38 -2.39 -0.02 2.09 16 4 C 0.50 10.76 7.14 87.66 0.63 11.39 16 5 O -0.55 -15.07 15.49 -3.04 -0.05 -15.11 16 6 N -0.61 -10.37 3.27 -871.90 -2.85 -13.23 16 7 C 0.08 1.09 10.52 127.77 1.34 2.43 16 8 C 0.06 0.79 10.51 127.77 1.34 2.14 16 9 N -0.28 -7.75 3.24 -330.74 -1.07 -8.82 16 10 C -0.02 -0.51 10.64 83.49 0.89 0.38 16 11 C -0.03 -1.19 6.62 41.60 0.28 -0.92 16 12 C 0.24 10.13 6.82 85.63 0.58 10.71 16 13 N -0.74 -39.37 5.59 -347.17 -1.94 -41.31 16 14 C -0.24 -13.91 9.99 84.04 0.84 -13.07 16 15 H 0.08 4.48 7.83 -2.91 -0.02 4.46 16 16 C -0.08 -4.41 5.50 84.86 0.47 -3.94 16 17 N -0.97 -60.91 13.06 21.65 0.28 -60.63 16 18 Si 0.98 46.65 29.55 68.60 2.03 48.67 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 21 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 22 N -0.28 -11.45 12.41 -48.60 -0.60 -12.05 16 23 N -0.09 -2.99 12.25 37.02 0.45 -2.54 16 24 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 25 H 0.07 1.41 7.00 -2.38 -0.02 1.40 16 26 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.11 0.76 8.07 -2.39 -0.02 0.74 16 29 H 0.07 1.13 7.36 -2.39 -0.02 1.11 16 30 H 0.08 1.11 4.49 -2.39 -0.01 1.10 16 31 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.21 5.49 7.45 -2.91 -0.02 5.47 16 34 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 35 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 36 H 0.37 21.54 7.66 -92.71 -0.71 20.83 16 37 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -76.36 316.53 3.71 -72.64 By element: Atomic # 1 Polarization: 22.32 SS G_CDS: 0.38 Total: 22.70 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 7.09 Total: 9.68 kcal Atomic # 7 Polarization: -132.84 SS G_CDS: -5.73 Total: -138.58 kcal Atomic # 8 Polarization: -15.07 SS G_CDS: -0.05 Total: -15.11 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.67 kcal Total: -76.36 3.71 -72.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119333103.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.865 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.643 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds