Wall clock time and date at job start Mon Mar 30 2020 00:46:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 N 1.28712 * 126.03832 * 265.51971 * 3 2 1 5 5 N 1.28514 * 110.64127 * 179.88155 * 4 3 2 6 6 C 1.33325 * 109.43614 * 0.38833 * 5 4 3 7 7 C 1.50697 * 126.81055 * 179.76969 * 6 5 4 8 8 C 1.36999 * 106.37151 * 359.77172 * 6 5 4 9 9 C 1.47242 * 127.18757 * 179.97438 * 8 6 5 10 10 O 1.21619 * 119.99521 * 86.77751 * 9 8 6 11 11 N 1.34770 * 119.99793 * 266.78005 * 9 8 6 12 12 C 1.46500 * 119.99608 * 185.30307 * 11 9 8 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 9 14 14 N 1.46502 * 109.47562 * 180.02562 * 13 12 11 15 15 C 1.36933 * 120.00312 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00104 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47043 * 60.00364 * 19 17 15 21 21 H 1.48507 * 109.46732 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47275 * 299.99975 * 19 17 15 23 23 H 1.08998 * 109.47527 * 300.00321 * 1 2 3 24 24 H 1.09004 * 109.47030 * 60.00102 * 1 2 3 25 25 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47527 * 239.99679 * 2 1 3 27 27 H 1.09004 * 109.47030 * 119.99898 * 2 1 3 28 28 H 1.08994 * 109.47202 * 270.00450 * 7 6 5 29 29 H 1.09004 * 109.47344 * 30.00173 * 7 6 5 30 30 H 1.09004 * 109.47023 * 149.99821 * 7 6 5 31 31 H 0.96998 * 120.00179 * 5.30360 * 11 9 8 32 32 H 1.09000 * 109.47384 * 300.00209 * 12 11 9 33 33 H 1.09001 * 109.47578 * 59.99861 * 12 11 9 34 34 H 1.09000 * 109.47067 * 300.00325 * 13 12 11 35 35 H 1.09007 * 109.47016 * 59.99889 * 13 12 11 36 36 H 0.97006 * 119.99441 * 359.97438 * 14 13 12 37 37 H 0.97003 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3474 2.0680 -1.0376 5 7 2.7330 3.2459 -0.6976 6 6 2.6727 3.3668 0.6287 7 6 3.0396 4.5811 1.4423 8 6 2.2112 2.1682 1.1052 9 6 1.9726 1.8017 2.5112 10 8 0.9033 2.0546 3.0324 11 7 2.9393 1.1862 3.2205 12 6 2.6639 0.7175 4.5809 13 6 3.9194 0.0607 5.1580 14 7 3.6439 -0.4086 6.5182 15 6 4.6263 -1.0332 7.2392 16 1 5.6043 -1.1802 6.8050 17 6 4.3654 -1.4773 8.5282 18 7 3.1738 -1.2978 9.0575 19 14 5.7054 -2.3299 9.5114 20 1 6.8599 -1.4104 9.6757 21 1 5.1768 -2.7037 10.8480 22 1 6.1448 -3.5528 8.7927 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0941 4.5318 1.7135 29 1 2.8573 5.4809 0.8546 30 1 2.4325 4.6091 2.3472 31 1 3.8174 1.0536 2.8302 32 1 2.3770 1.5634 5.2055 33 1 1.8515 -0.0088 4.5575 34 1 4.2068 -0.7852 4.5334 35 1 4.7316 0.7874 5.1815 36 1 2.7657 -0.2762 6.9083 37 1 2.9915 -1.6078 9.9584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001129284120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:18 Heat of formation + Delta-G solvation = 66.986582 kcal Electronic energy + Delta-G solvation = -19900.166171 eV Core-core repulsion = 16715.119655 eV Total energy + Delta-G solvation = -3185.046516 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -43.48927 -39.60634 -35.94978 -35.88203 -34.03326 -32.93639 -31.46531 -31.00080 -28.51530 -27.53328 -25.09034 -24.14995 -22.87924 -21.63466 -21.47089 -20.44609 -18.24185 -17.40104 -16.74318 -16.70503 -15.78064 -15.51635 -14.93612 -14.64312 -14.27316 -13.96660 -13.86416 -13.54691 -13.29341 -13.01837 -12.99209 -12.79898 -12.46345 -12.13178 -11.89794 -11.62247 -11.23021 -11.15313 -10.95321 -10.85725 -10.44150 -10.29116 -10.18398 -9.83203 -9.37428 -9.22417 -8.97479 -7.08351 -5.86724 -3.18207 1.04547 1.66289 2.19647 2.38037 2.94711 3.38185 3.42838 3.44000 3.98730 4.19612 4.39820 4.43909 4.53383 4.66414 4.69135 5.04114 5.14777 5.31245 5.32977 5.40392 5.40766 5.52308 5.61637 5.65074 5.68885 5.80356 5.95073 5.98553 6.17503 6.24080 6.54533 6.55625 7.24123 7.58622 7.87924 8.18216 8.30469 9.42067 9.95047 10.29700 11.35579 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.003504 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.012728 B = 7988.119509 C = 8301.225482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.106 3.894 3 N -0.266 5.266 4 N -0.065 5.065 5 N -0.270 5.270 6 C 0.027 3.973 7 C -0.074 4.074 8 C -0.062 4.062 9 C 0.593 3.407 10 O -0.513 6.513 11 N -0.706 5.706 12 C 0.109 3.891 13 C 0.145 3.855 14 N -0.729 5.729 15 C -0.248 4.248 16 H 0.071 0.929 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.911 3.089 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 H 0.072 0.928 24 H 0.069 0.931 25 H 0.089 0.911 26 H 0.114 0.886 27 H 0.106 0.894 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.404 0.596 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.024 0.976 35 H 0.027 0.973 36 H 0.386 0.614 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.277 4.961 -18.126 18.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.015 4.015 3 N -0.064 5.064 4 N -0.044 5.044 5 N -0.135 5.135 6 C -0.113 4.113 7 C -0.133 4.133 8 C -0.196 4.196 9 C 0.373 3.627 10 O -0.386 6.386 11 N -0.358 5.358 12 C -0.014 4.014 13 C 0.016 3.984 14 N -0.374 5.374 15 C -0.379 4.379 16 H 0.089 0.911 17 C -0.206 4.206 18 N -0.578 5.578 19 Si 0.741 3.259 20 H -0.211 1.211 21 H -0.216 1.216 22 H -0.212 1.212 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.133 0.867 27 H 0.124 0.876 28 H 0.101 0.899 29 H 0.102 0.898 30 H 0.098 0.902 31 H 0.238 0.762 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.042 0.958 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -2.818 4.990 -19.195 20.032 hybrid contribution 0.693 -0.731 1.584 1.877 sum -2.125 4.259 -17.612 18.244 Atomic orbital electron populations 1.22195 0.92384 1.04348 1.04139 1.22280 0.96979 0.75920 1.06280 1.47840 1.41529 1.13365 1.03657 1.78167 1.14882 0.99708 1.11666 1.74825 1.17545 1.09282 1.11836 1.22176 1.02315 0.95603 0.91168 1.20204 1.02485 0.92455 0.98167 1.21884 1.12891 0.94412 0.90430 1.16751 0.84460 0.78338 0.83113 1.90881 1.25052 1.52251 1.70460 1.45937 1.14753 1.58248 1.16851 1.21734 0.99819 0.99593 0.80238 1.20753 0.93270 0.95901 0.88439 1.42160 1.14266 1.70434 1.10541 1.19133 0.92741 1.30365 0.95638 0.91056 1.24776 0.96944 1.01504 0.97362 1.69654 1.20384 1.51672 1.16070 0.86225 0.80895 0.79412 0.79359 1.21119 1.21557 1.21154 0.90884 0.91205 0.89252 0.86732 0.87620 0.89895 0.89814 0.90232 0.76172 0.90541 0.90837 0.95775 0.95568 0.77958 0.93232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.31 10.24 37.16 0.38 -0.93 16 2 C 0.11 0.83 6.90 -4.04 -0.03 0.80 16 3 N -0.27 -3.04 3.39 -57.37 -0.19 -3.23 16 4 N -0.07 -0.86 13.14 60.35 0.79 -0.07 16 5 N -0.27 -3.75 12.35 33.51 0.41 -3.34 16 6 C 0.03 0.34 7.30 -82.39 -0.60 -0.26 16 7 C -0.07 -0.72 10.28 36.00 0.37 -0.35 16 8 C -0.06 -0.77 6.74 -82.33 -0.55 -1.33 16 9 C 0.59 8.01 6.99 -12.60 -0.09 7.92 16 10 O -0.51 -8.72 17.12 5.26 0.09 -8.63 16 11 N -0.71 -8.67 5.55 -61.44 -0.34 -9.02 16 12 C 0.11 1.66 5.79 -4.04 -0.02 1.64 16 13 C 0.14 2.60 6.37 -4.04 -0.03 2.58 16 14 N -0.73 -17.57 5.60 -59.91 -0.34 -17.91 16 15 C -0.25 -6.68 9.99 -15.06 -0.15 -6.83 16 16 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 17 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 18 N -0.93 -27.41 13.06 55.49 0.72 -26.69 16 19 Si 0.91 21.69 29.55 -169.99 -5.02 16.67 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.11 0.74 7.99 -51.93 -0.41 0.33 16 28 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.78 8.02 -51.93 -0.42 0.36 16 31 H 0.40 4.06 8.46 -40.82 -0.35 3.72 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 34 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.03 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.39 9.86 7.67 -40.82 -0.31 9.55 16 37 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -33.16 326.89 -5.03 -38.19 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -5.26 Total: 6.20 kcal Atomic # 6 Polarization: 3.71 SS G_CDS: -0.82 Total: 2.90 kcal Atomic # 7 Polarization: -61.32 SS G_CDS: 1.06 Total: -60.26 kcal Atomic # 8 Polarization: -8.72 SS G_CDS: 0.09 Total: -8.63 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -33.16 -5.03 -38.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129284120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.175 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds