Wall clock time and date at job start Mon Mar 30 2020 00:46:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46500 * 109.47285 * 2 1 4 4 N 1.28712 * 126.03832 * 265.51971 * 3 2 1 5 5 N 1.28514 * 110.64127 * 179.88155 * 4 3 2 6 6 C 1.33325 * 109.43614 * 0.38833 * 5 4 3 7 7 C 1.50697 * 126.81055 * 179.76969 * 6 5 4 8 8 C 1.36999 * 106.37151 * 359.77172 * 6 5 4 9 9 C 1.47242 * 127.18757 * 179.97438 * 8 6 5 10 10 O 1.21619 * 119.99521 * 86.77751 * 9 8 6 11 11 N 1.34770 * 119.99793 * 266.78005 * 9 8 6 12 12 C 1.46500 * 119.99608 * 185.30307 * 11 9 8 13 13 C 1.52999 * 109.47183 * 180.02562 * 12 11 9 14 14 N 1.46502 * 109.47562 * 180.02562 * 13 12 11 15 15 C 1.36933 * 120.00312 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00104 * 359.97438 * 15 14 13 17 17 C 1.38811 * 120.00125 * 179.97438 * 15 14 13 18 18 N 1.31623 * 119.99935 * 359.97438 * 17 15 14 19 19 Si 1.86798 * 119.99928 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47043 * 60.00364 * 19 17 15 21 21 H 1.48507 * 109.46732 * 179.97438 * 19 17 15 22 22 H 1.48497 * 109.47275 * 299.99975 * 19 17 15 23 23 H 1.08998 * 109.47527 * 300.00321 * 1 2 3 24 24 H 1.09004 * 109.47030 * 60.00102 * 1 2 3 25 25 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47527 * 239.99679 * 2 1 3 27 27 H 1.09004 * 109.47030 * 119.99898 * 2 1 3 28 28 H 1.08994 * 109.47202 * 270.00450 * 7 6 5 29 29 H 1.09004 * 109.47344 * 30.00173 * 7 6 5 30 30 H 1.09004 * 109.47023 * 149.99821 * 7 6 5 31 31 H 0.96998 * 120.00179 * 5.30360 * 11 9 8 32 32 H 1.09000 * 109.47384 * 300.00209 * 12 11 9 33 33 H 1.09001 * 109.47578 * 59.99861 * 12 11 9 34 34 H 1.09000 * 109.47067 * 300.00325 * 13 12 11 35 35 H 1.09007 * 109.47016 * 59.99889 * 13 12 11 36 36 H 0.97006 * 119.99441 * 359.97438 * 14 13 12 37 37 H 0.97003 * 119.99847 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 7 2.3474 2.0680 -1.0376 5 7 2.7330 3.2459 -0.6976 6 6 2.6727 3.3668 0.6287 7 6 3.0396 4.5811 1.4423 8 6 2.2112 2.1682 1.1052 9 6 1.9726 1.8017 2.5112 10 8 0.9033 2.0546 3.0324 11 7 2.9393 1.1862 3.2205 12 6 2.6639 0.7175 4.5809 13 6 3.9194 0.0607 5.1580 14 7 3.6439 -0.4086 6.5182 15 6 4.6263 -1.0332 7.2392 16 1 5.6043 -1.1802 6.8050 17 6 4.3654 -1.4773 8.5282 18 7 3.1738 -1.2978 9.0575 19 14 5.7054 -2.3299 9.5114 20 1 6.8599 -1.4104 9.6757 21 1 5.1768 -2.7037 10.8480 22 1 6.1448 -3.5528 8.7927 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 4.0941 4.5318 1.7135 29 1 2.8573 5.4809 0.8546 30 1 2.4325 4.6091 2.3472 31 1 3.8174 1.0536 2.8302 32 1 2.3770 1.5634 5.2055 33 1 1.8515 -0.0088 4.5575 34 1 4.2068 -0.7852 4.5334 35 1 4.7316 0.7874 5.1815 36 1 2.7657 -0.2762 6.9083 37 1 2.9915 -1.6078 9.9584 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129284120.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:17 Heat of formation + Delta-G solvation = 41.713071 kcal Electronic energy + Delta-G solvation = -19901.262113 eV Core-core repulsion = 16715.119655 eV Total energy + Delta-G solvation = -3186.142457 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.43649 -40.77582 -37.38469 -36.74478 -35.61378 -33.92134 -33.10438 -31.95438 -29.80086 -28.69937 -26.13319 -25.55585 -24.17741 -23.04971 -22.34325 -21.50663 -19.44171 -19.09061 -17.78965 -17.67410 -16.99145 -16.68963 -16.49430 -15.72341 -15.58773 -15.14754 -15.05635 -14.72661 -14.65797 -14.44729 -13.74262 -13.54323 -13.18680 -13.12880 -13.04252 -13.02241 -12.64380 -12.58925 -12.56771 -12.12574 -12.06013 -11.87411 -11.50018 -11.22388 -10.97351 -10.36530 -10.32840 -9.05093 -7.95806 -5.26734 0.09080 0.72194 1.22248 1.36752 1.50512 1.53062 1.59213 1.87220 2.57927 3.12923 3.37480 3.38939 3.53799 3.78107 3.80291 3.95770 4.10979 4.15545 4.19462 4.24257 4.55900 4.56111 4.58904 4.70134 4.74542 4.88440 4.93186 5.04554 5.12182 5.19344 5.19834 5.32990 5.50070 6.18579 6.25087 6.81385 7.21518 7.32173 8.03786 8.25985 9.27369 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.029685 B = 0.003504 C = 0.003372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.012728 B = 7988.119509 C = 8301.225482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 N -0.256 5.256 4 N -0.075 5.075 5 N -0.294 5.294 6 C 0.026 3.974 7 C -0.075 4.075 8 C -0.073 4.073 9 C 0.606 3.394 10 O -0.549 6.549 11 N -0.689 5.689 12 C 0.127 3.873 13 C 0.147 3.853 14 N -0.746 5.746 15 C -0.249 4.249 16 H 0.082 0.918 17 C -0.072 4.072 18 N -0.969 5.969 19 Si 0.975 3.025 20 H -0.277 1.277 21 H -0.298 1.298 22 H -0.276 1.276 23 H 0.045 0.955 24 H 0.066 0.934 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.116 0.884 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.418 0.582 32 H 0.064 0.936 33 H 0.068 0.932 34 H 0.040 0.960 35 H 0.037 0.963 36 H 0.375 0.625 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 4.469 -19.209 19.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.024 4.024 3 N -0.055 5.055 4 N -0.053 5.053 5 N -0.158 5.158 6 C -0.115 4.115 7 C -0.133 4.133 8 C -0.208 4.208 9 C 0.387 3.613 10 O -0.425 6.425 11 N -0.341 5.341 12 C 0.003 3.997 13 C 0.021 3.979 14 N -0.389 5.389 15 C -0.381 4.381 16 H 0.100 0.900 17 C -0.265 4.265 18 N -0.619 5.619 19 Si 0.804 3.196 20 H -0.203 1.203 21 H -0.224 1.224 22 H -0.202 1.202 23 H 0.065 0.935 24 H 0.085 0.915 25 H 0.134 0.866 26 H 0.159 0.841 27 H 0.134 0.866 28 H 0.119 0.881 29 H 0.112 0.888 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.207 0.793 37 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.477 4.496 -20.351 20.894 hybrid contribution 0.281 -0.572 1.818 1.926 sum -1.196 3.925 -18.533 18.981 Atomic orbital electron populations 1.22170 0.92207 1.05582 1.02576 1.22698 0.97106 0.74455 1.08161 1.48144 1.40312 1.14150 1.02862 1.78104 1.15210 0.99889 1.12145 1.74810 1.18680 1.09830 1.12523 1.22641 1.01549 0.96312 0.90985 1.20324 1.03473 0.91828 0.97723 1.21717 1.14056 0.94952 0.90065 1.16724 0.83760 0.77475 0.83317 1.90872 1.26586 1.53799 1.71272 1.45666 1.15318 1.57563 1.15601 1.21338 0.98333 0.98769 0.81248 1.20852 0.94595 0.96556 0.85930 1.42375 1.13342 1.70542 1.12668 1.19586 0.93540 1.29076 0.95861 0.90003 1.25600 0.99022 1.03128 0.98761 1.69814 1.22425 1.53545 1.16108 0.85193 0.78390 0.78629 0.77408 1.20263 1.22403 1.20157 0.93543 0.91541 0.86647 0.84053 0.86579 0.88093 0.88755 0.90588 0.74461 0.91770 0.91409 0.94245 0.94476 0.79281 0.93905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 10.24 71.98 0.74 -1.58 16 2 C 0.09 1.29 6.90 86.38 0.60 1.89 16 3 N -0.26 -5.48 3.39 -335.42 -1.14 -6.62 16 4 N -0.07 -1.88 13.14 37.02 0.49 -1.39 16 5 N -0.29 -7.89 12.35 -47.89 -0.59 -8.49 16 6 C 0.03 0.61 7.30 42.04 0.31 0.92 16 7 C -0.08 -1.34 10.28 71.23 0.73 -0.61 16 8 C -0.07 -1.75 6.74 40.41 0.27 -1.48 16 9 C 0.61 15.73 6.99 86.61 0.61 16.34 16 10 O -0.55 -18.55 17.12 -4.09 -0.07 -18.62 16 11 N -0.69 -15.73 5.55 -466.56 -2.59 -18.32 16 12 C 0.13 3.73 5.79 86.38 0.50 4.23 16 13 C 0.15 5.04 6.37 86.38 0.55 5.59 16 14 N -0.75 -35.45 5.60 -343.44 -1.92 -37.38 16 15 C -0.25 -13.16 9.99 84.03 0.84 -12.32 16 16 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 17 C -0.07 -4.01 5.50 84.86 0.47 -3.54 16 18 N -0.97 -57.70 13.06 21.65 0.28 -57.42 16 19 Si 0.98 44.23 29.55 68.60 2.03 46.26 16 20 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 21 H -0.30 -13.75 7.11 99.48 0.71 -13.05 16 22 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 23 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 25 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 26 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 27 H 0.12 1.36 7.99 -2.38 -0.02 1.35 16 28 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 29 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 30 H 0.08 1.41 8.02 -2.38 -0.02 1.40 16 31 H 0.42 7.35 8.46 -92.71 -0.78 6.57 16 32 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 34 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 36 H 0.38 19.30 7.67 -92.70 -0.71 18.59 16 37 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 Total: -1.00 -70.64 326.89 1.69 -68.94 By element: Atomic # 1 Polarization: 23.99 SS G_CDS: -0.40 Total: 23.59 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 5.61 Total: 9.45 kcal Atomic # 7 Polarization: -124.15 SS G_CDS: -5.47 Total: -129.62 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: -0.07 Total: -18.62 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -70.64 1.69 -68.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129284120.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.657 kcal (2) G-P(sol) polarization free energy of solvation -70.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds