Wall clock time and date at job start Mon Mar 30 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.35310 * 125.87070 * 125.32549 * 3 2 1 5 5 C 1.35354 * 106.17293 * 180.11358 * 4 3 2 6 6 C 1.50700 * 126.75032 * 179.84817 * 5 4 3 7 7 C 1.50702 * 109.46869 * 124.71369 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.36929 * 120.00268 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00173 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00157 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00135 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00229 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47093 * 119.99816 * 17 15 13 20 20 H 1.48503 * 109.47239 * 240.00096 * 17 15 13 21 21 N 1.33770 * 106.49832 * 359.59477 * 5 4 3 22 22 N 1.28632 * 108.88455 * 0.25491 * 21 5 4 23 23 H 1.09000 * 109.47215 * 60.00028 * 1 2 3 24 24 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47071 * 300.00874 * 1 2 3 26 26 H 1.08993 * 109.47252 * 239.99021 * 2 1 3 27 27 H 1.08998 * 109.46881 * 119.99271 * 2 1 3 28 28 H 1.08000 * 126.91429 * 359.96905 * 4 3 2 29 29 H 1.09004 * 109.47210 * 4.71662 * 6 5 4 30 30 H 1.08994 * 109.47551 * 244.71314 * 6 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 35 35 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 36 36 H 0.97000 * 119.99478 * 0.02562 * 12 11 10 37 37 H 0.97004 * 120.00691 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0545 3.2074 0.5239 6 6 3.9240 4.2321 1.2059 7 6 4.8953 4.8101 0.2091 8 8 4.8825 4.4279 -0.9419 9 7 5.7742 5.7561 0.5952 10 6 6.7144 6.3223 -0.3751 11 6 7.5939 7.3662 0.3160 12 7 8.5337 7.9328 -0.6545 13 6 9.4273 8.8932 -0.2619 14 1 9.4396 9.2327 0.7633 15 6 10.3174 9.4305 -1.1816 16 7 10.3028 9.0165 -2.4309 17 14 11.5369 10.7402 -0.6460 18 1 11.3516 11.0279 0.7991 19 1 12.9203 10.2537 -0.8798 20 1 11.3088 11.9799 -1.4312 21 7 2.3074 3.3924 -0.5702 22 7 1.7061 2.2915 -0.8548 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.8933 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8900 28 1 3.3359 1.4173 1.7365 29 1 4.4756 3.7581 2.0178 30 1 3.2989 5.0292 1.6082 31 1 5.7844 6.0619 1.5157 32 1 7.3426 5.5281 -0.7785 33 1 6.1595 6.7938 -1.1862 34 1 6.9660 8.1604 0.7197 35 1 8.1489 6.8942 1.1268 36 1 8.5229 7.6276 -1.5751 37 1 10.9251 9.3916 -3.0736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131624643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:20 Heat of formation + Delta-G solvation = 70.937627 kcal Electronic energy + Delta-G solvation = -19069.675808 eV Core-core repulsion = 15884.800622 eV Total energy + Delta-G solvation = -3184.875186 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -43.38526 -39.37686 -35.91855 -35.50499 -33.75129 -32.82957 -31.18674 -31.10219 -28.85104 -27.05397 -24.98530 -23.62211 -22.13095 -21.61303 -21.26711 -20.01265 -17.71147 -17.22625 -16.96537 -16.37592 -15.57536 -15.55956 -14.93413 -14.84247 -14.54214 -14.09452 -13.78273 -13.48769 -13.13848 -13.07295 -12.82520 -12.73932 -12.35887 -12.09369 -11.63402 -11.32353 -11.07011 -10.84286 -10.80104 -10.76427 -10.18321 -10.06318 -9.83953 -9.67686 -9.25489 -8.94121 -8.73459 -6.96087 -5.76775 -3.07374 1.43381 2.10757 2.43116 2.85837 3.41256 3.43985 3.49936 3.51847 3.96296 4.19156 4.31982 4.54454 4.58867 4.60271 4.78064 5.01223 5.01483 5.09666 5.16911 5.33718 5.51758 5.53666 5.60938 5.71781 5.85039 5.96028 6.02393 6.22062 6.40026 6.56828 6.76184 6.82676 7.68763 7.72329 8.40512 8.44668 8.46708 9.51998 10.07656 10.42232 11.45889 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.075945 B = 0.002491 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.598750 B =11238.094668 C =11416.788235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 N -0.295 5.295 4 C -0.048 4.048 5 C -0.004 4.004 6 C -0.053 4.053 7 C 0.510 3.490 8 O -0.523 6.523 9 N -0.726 5.726 10 C 0.112 3.888 11 C 0.145 3.855 12 N -0.730 5.730 13 C -0.242 4.242 14 H 0.072 0.928 15 C -0.014 4.014 16 N -0.930 5.930 17 Si 0.910 3.090 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 N -0.237 5.237 22 N -0.086 5.086 23 H 0.075 0.925 24 H 0.082 0.918 25 H 0.063 0.937 26 H 0.099 0.901 27 H 0.104 0.896 28 H 0.189 0.811 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.399 0.601 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.024 0.976 35 H 0.024 0.976 36 H 0.386 0.614 37 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.771 -19.655 12.417 29.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.009 4.009 3 N -0.089 5.089 4 C -0.199 4.199 5 C -0.143 4.143 6 C -0.095 4.095 7 C 0.295 3.705 8 O -0.398 6.398 9 N -0.378 5.378 10 C -0.012 4.012 11 C 0.017 3.983 12 N -0.375 5.375 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.210 4.210 16 N -0.579 5.579 17 Si 0.741 3.259 18 H -0.205 1.205 19 H -0.218 1.218 20 H -0.218 1.218 21 N -0.104 5.104 22 N -0.066 5.066 23 H 0.094 0.906 24 H 0.101 0.899 25 H 0.082 0.918 26 H 0.117 0.883 27 H 0.123 0.877 28 H 0.206 0.794 29 H 0.128 0.872 30 H 0.129 0.871 31 H 0.232 0.768 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.042 0.958 35 H 0.042 0.958 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -19.523 -19.523 10.384 29.498 hybrid contribution 1.400 0.327 1.367 1.984 sum -18.123 -19.196 11.751 28.897 Atomic orbital electron populations 1.22077 0.92691 1.03641 1.04109 1.22070 0.96919 0.76656 1.05210 1.47431 1.30631 1.12029 1.18836 1.23282 1.00846 0.95358 1.00404 1.21242 1.02390 0.93949 0.96743 1.19884 0.95454 0.97119 0.97086 1.20279 0.81257 0.79749 0.89247 1.90767 1.69783 1.59856 1.19413 1.45886 1.36785 1.41179 1.13987 1.21544 0.91003 0.96804 0.91807 1.20757 0.91288 0.93158 0.93109 1.42210 1.39424 1.46928 1.08962 1.19240 1.10002 1.13084 0.95030 0.90965 1.24793 1.00055 1.00505 0.95646 1.69679 1.39930 1.45912 1.02331 0.86075 0.80984 0.81270 0.77570 1.20514 1.21821 1.21790 1.75141 1.07608 1.15670 1.11960 1.78308 1.20912 0.92890 1.14463 0.90571 0.89934 0.91755 0.88317 0.87740 0.79354 0.87213 0.87127 0.76755 0.91474 0.91322 0.95781 0.95844 0.78002 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.04 37.16 0.37 -0.33 16 2 C 0.11 0.53 7.17 -4.04 -0.03 0.50 16 3 N -0.30 -2.88 3.44 -61.27 -0.21 -3.09 16 4 C -0.05 -0.43 11.49 -17.05 -0.20 -0.63 16 5 C 0.00 -0.05 6.00 -82.78 -0.50 -0.55 16 6 C -0.05 -0.52 6.28 -29.03 -0.18 -0.70 16 7 C 0.51 7.49 7.82 -10.98 -0.09 7.41 16 8 O -0.52 -10.46 15.60 5.55 0.09 -10.38 16 9 N -0.73 -9.93 5.56 -60.29 -0.33 -10.26 16 10 C 0.11 2.00 5.79 -4.04 -0.02 1.97 16 11 C 0.15 2.88 6.37 -4.04 -0.03 2.85 16 12 N -0.73 -18.92 5.60 -59.91 -0.34 -19.25 16 13 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 14 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 15 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 16 N -0.93 -28.70 13.06 55.49 0.72 -27.97 16 17 Si 0.91 22.53 29.55 -169.99 -5.02 17.51 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 19 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 20 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 21 N -0.24 -3.81 11.82 33.29 0.39 -3.42 16 22 N -0.09 -1.22 12.91 60.35 0.78 -0.44 16 23 H 0.08 0.47 8.12 -51.93 -0.42 0.04 16 24 H 0.08 0.16 8.14 -51.93 -0.42 -0.27 16 25 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 26 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.10 0.17 8.07 -51.93 -0.42 -0.25 16 28 H 0.19 0.80 8.06 -52.49 -0.42 0.38 16 29 H 0.11 0.63 8.12 -51.93 -0.42 0.21 16 30 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.40 4.01 8.47 -40.82 -0.35 3.67 16 32 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.39 10.64 7.67 -40.82 -0.31 10.33 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 325.11 15.07 4.90 4.90 Total: -1.00 -39.03 325.11 -5.21 -44.24 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.27 Total: 5.14 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -0.91 Total: 3.02 kcal Atomic # 7 Polarization: -65.45 SS G_CDS: 1.02 Total: -64.43 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.51 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -39.03 -5.21 -44.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131624643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.178 kcal (2) G-P(sol) polarization free energy of solvation -39.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.240 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds