Wall clock time and date at job start Mon Mar 30 2020 00:46:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46499 * 109.47276 * 2 1 4 4 C 1.35310 * 125.87070 * 125.32549 * 3 2 1 5 5 C 1.35354 * 106.17293 * 180.11358 * 4 3 2 6 6 C 1.50700 * 126.75032 * 179.84817 * 5 4 3 7 7 C 1.50702 * 109.46869 * 124.71369 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72354 * 7 6 5 10 10 C 1.46499 * 120.00199 * 180.27479 * 9 7 6 11 11 C 1.52997 * 109.47555 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47555 * 180.02562 * 11 10 9 13 13 C 1.36929 * 120.00268 * 180.02562 * 12 11 10 14 14 H 1.08001 * 120.00173 * 0.02562 * 13 12 11 15 15 C 1.38811 * 120.00157 * 180.02562 * 13 12 11 16 16 N 1.31614 * 120.00135 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00229 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47077 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47093 * 119.99816 * 17 15 13 20 20 H 1.48503 * 109.47239 * 240.00096 * 17 15 13 21 21 N 1.33770 * 106.49832 * 359.59477 * 5 4 3 22 22 N 1.28632 * 108.88455 * 0.25491 * 21 5 4 23 23 H 1.09000 * 109.47215 * 60.00028 * 1 2 3 24 24 H 1.08991 * 109.47317 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.47071 * 300.00874 * 1 2 3 26 26 H 1.08993 * 109.47252 * 239.99021 * 2 1 3 27 27 H 1.08998 * 109.46881 * 119.99271 * 2 1 3 28 28 H 1.08000 * 126.91429 * 359.96905 * 4 3 2 29 29 H 1.09004 * 109.47210 * 4.71662 * 6 5 4 30 30 H 1.08994 * 109.47551 * 244.71314 * 6 5 4 31 31 H 0.97000 * 120.00317 * 0.28382 * 9 7 6 32 32 H 1.08998 * 109.47134 * 300.00670 * 10 9 7 33 33 H 1.09002 * 109.46857 * 59.99862 * 10 9 7 34 34 H 1.08998 * 109.47382 * 300.00439 * 11 10 9 35 35 H 1.09005 * 109.46800 * 60.00640 * 11 10 9 36 36 H 0.97000 * 119.99478 * 0.02562 * 12 11 10 37 37 H 0.97004 * 120.00691 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.8804 1.9173 0.8946 5 6 3.0545 3.2074 0.5239 6 6 3.9240 4.2321 1.2059 7 6 4.8953 4.8101 0.2091 8 8 4.8825 4.4279 -0.9419 9 7 5.7742 5.7561 0.5952 10 6 6.7144 6.3223 -0.3751 11 6 7.5939 7.3662 0.3160 12 7 8.5337 7.9328 -0.6545 13 6 9.4273 8.8932 -0.2619 14 1 9.4396 9.2327 0.7633 15 6 10.3174 9.4305 -1.1816 16 7 10.3028 9.0165 -2.4309 17 14 11.5369 10.7402 -0.6460 18 1 11.3516 11.0279 0.7991 19 1 12.9203 10.2537 -0.8798 20 1 11.3088 11.9799 -1.4312 21 7 2.3074 3.3924 -0.5702 22 7 1.7061 2.2915 -0.8548 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5140 0.8899 26 1 1.8933 -0.5139 -0.8898 27 1 1.8933 -0.5137 0.8900 28 1 3.3359 1.4173 1.7365 29 1 4.4756 3.7581 2.0178 30 1 3.2989 5.0292 1.6082 31 1 5.7844 6.0619 1.5157 32 1 7.3426 5.5281 -0.7785 33 1 6.1595 6.7938 -1.1862 34 1 6.9660 8.1604 0.7197 35 1 8.1489 6.8942 1.1268 36 1 8.5229 7.6276 -1.5751 37 1 10.9251 9.3916 -3.0736 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131624643.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:46:20 Heat of formation + Delta-G solvation = 38.796151 kcal Electronic energy + Delta-G solvation = -19071.069567 eV Core-core repulsion = 15884.800622 eV Total energy + Delta-G solvation = -3186.268945 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -44.16571 -40.58987 -37.31882 -36.38868 -35.42531 -33.73126 -33.02463 -31.69978 -30.10613 -28.41811 -25.59228 -25.47851 -23.24901 -22.80311 -22.28161 -21.05252 -19.31824 -18.36566 -17.92469 -17.21074 -16.85859 -16.72587 -16.49327 -15.80188 -15.36053 -15.33806 -15.15990 -15.00848 -14.47339 -14.34771 -13.60847 -13.43779 -13.09357 -13.03305 -12.90111 -12.66228 -12.61976 -12.46799 -12.29178 -12.03211 -11.84562 -11.62754 -10.99676 -10.98256 -10.91155 -10.12213 -10.03591 -9.05925 -7.96234 -5.27830 0.72382 1.47993 1.49929 1.50652 1.60809 1.61721 1.74151 2.28128 2.60043 3.35924 3.38081 3.69619 3.93978 3.96758 3.99368 4.08123 4.19812 4.23998 4.27775 4.33050 4.49309 4.60525 4.61817 4.76155 4.78750 5.04384 5.06192 5.16739 5.16766 5.28442 5.44652 5.51801 5.78841 6.24529 6.66067 7.30208 7.37894 7.61624 8.02870 8.25474 9.27857 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.075945 B = 0.002491 C = 0.002452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.598750 B =11238.094668 C =11416.788235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.101 3.899 3 N -0.289 5.289 4 C -0.025 4.025 5 C -0.037 4.037 6 C -0.041 4.041 7 C 0.506 3.494 8 O -0.584 6.584 9 N -0.710 5.710 10 C 0.129 3.871 11 C 0.150 3.850 12 N -0.750 5.750 13 C -0.245 4.245 14 H 0.086 0.914 15 C -0.082 4.082 16 N -0.973 5.973 17 Si 0.981 3.019 18 H -0.260 1.260 19 H -0.294 1.294 20 H -0.295 1.295 21 N -0.298 5.298 22 N -0.131 5.131 23 H 0.048 0.952 24 H 0.110 0.890 25 H 0.060 0.940 26 H 0.103 0.897 27 H 0.148 0.852 28 H 0.244 0.756 29 H 0.162 0.838 30 H 0.133 0.867 31 H 0.420 0.580 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.038 0.962 35 H 0.042 0.958 36 H 0.372 0.628 37 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.832 -20.885 16.133 32.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.018 4.018 3 N -0.083 5.083 4 C -0.177 4.177 5 C -0.177 4.177 6 C -0.082 4.082 7 C 0.293 3.707 8 O -0.463 6.463 9 N -0.364 5.364 10 C 0.004 3.996 11 C 0.023 3.977 12 N -0.393 5.393 13 C -0.377 4.377 14 H 0.104 0.896 15 C -0.274 4.274 16 N -0.624 5.624 17 Si 0.810 3.190 18 H -0.183 1.183 19 H -0.221 1.221 20 H -0.222 1.222 21 N -0.163 5.163 22 N -0.110 5.110 23 H 0.067 0.933 24 H 0.128 0.872 25 H 0.079 0.921 26 H 0.121 0.879 27 H 0.166 0.834 28 H 0.260 0.740 29 H 0.179 0.821 30 H 0.151 0.849 31 H 0.258 0.742 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.203 0.797 37 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.640 -20.763 14.175 31.903 hybrid contribution 1.342 0.581 0.281 1.489 sum -18.299 -20.182 14.456 30.840 Atomic orbital electron populations 1.22051 0.92563 1.04921 1.02536 1.22573 0.97136 0.74538 1.07542 1.47898 1.29814 1.12877 1.17748 1.24080 0.98941 0.94176 1.00482 1.21840 1.03082 0.96163 0.96658 1.20019 0.94361 0.97556 0.96218 1.21273 0.81178 0.78821 0.89408 1.90752 1.71410 1.61767 1.22381 1.45673 1.35702 1.40791 1.14264 1.21069 0.90922 0.95653 0.91987 1.20863 0.90767 0.93742 0.92303 1.42482 1.40360 1.47009 1.09419 1.19720 1.09691 1.12759 0.95491 0.89620 1.25725 1.02546 1.03308 0.95785 1.69855 1.41130 1.47754 1.03619 0.84960 0.78021 0.77989 0.78060 1.18347 1.22079 1.22200 1.75056 1.09558 1.17340 1.14382 1.78204 1.22584 0.93687 1.16522 0.93320 0.87162 0.92122 0.87923 0.83421 0.74026 0.82058 0.84909 0.74188 0.93299 0.93841 0.94387 0.93963 0.79650 0.93964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 10.04 71.98 0.72 -0.43 16 2 C 0.10 0.71 7.17 86.38 0.62 1.33 16 3 N -0.29 -5.19 3.44 -347.75 -1.20 -6.39 16 4 C -0.02 -0.36 11.49 83.49 0.96 0.60 16 5 C -0.04 -0.86 6.00 41.60 0.25 -0.61 16 6 C -0.04 -0.67 6.28 29.10 0.18 -0.48 16 7 C 0.51 14.35 7.82 87.66 0.69 15.03 16 8 O -0.58 -24.03 15.60 -3.04 -0.05 -24.08 16 9 N -0.71 -18.31 5.56 -463.06 -2.57 -20.88 16 10 C 0.13 4.61 5.79 86.38 0.50 5.11 16 11 C 0.15 5.78 6.37 86.38 0.55 6.33 16 12 N -0.75 -38.98 5.60 -343.46 -1.92 -40.90 16 13 C -0.25 -13.71 9.99 84.03 0.84 -12.87 16 14 H 0.09 4.47 7.83 -2.91 -0.02 4.44 16 15 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 16 N -0.97 -61.27 13.06 21.65 0.28 -60.99 16 17 Si 0.98 46.28 29.55 68.60 2.03 48.30 16 18 H -0.26 -11.22 7.11 99.48 0.71 -10.52 16 19 H -0.29 -13.85 7.11 99.48 0.71 -13.14 16 20 H -0.29 -13.97 7.11 99.48 0.71 -13.26 16 21 N -0.30 -9.83 11.82 -48.60 -0.57 -10.40 16 22 N -0.13 -3.80 12.91 37.02 0.48 -3.33 16 23 H 0.05 0.62 8.12 -2.39 -0.02 0.60 16 24 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 25 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 26 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.15 -0.23 8.07 -2.39 -0.02 -0.25 16 28 H 0.24 0.56 8.06 -2.91 -0.02 0.54 16 29 H 0.16 0.93 8.12 -2.38 -0.02 0.91 16 30 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.42 7.12 8.47 -92.71 -0.79 6.33 16 32 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.37 21.13 7.67 -92.71 -0.71 20.42 16 37 H 0.25 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -90.85 325.11 1.84 -89.01 By element: Atomic # 1 Polarization: 20.35 SS G_CDS: -0.41 Total: 19.95 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: 5.78 Total: 9.71 kcal Atomic # 7 Polarization: -137.38 SS G_CDS: -5.51 Total: -142.89 kcal Atomic # 8 Polarization: -24.03 SS G_CDS: -0.05 Total: -24.08 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Total: -90.85 1.84 -89.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131624643.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.806 kcal (2) G-P(sol) polarization free energy of solvation -90.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds