Wall clock time and date at job start Mon Mar 30 2020 00:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.08993 * 109.47488 * 305.00558 * 5 4 2 7 7 C 1.52995 * 109.46862 * 184.99826 * 5 4 2 8 8 N 1.46504 * 109.46769 * 65.00614 * 5 4 2 9 9 C 1.34776 * 119.99674 * 204.99901 * 8 5 4 10 10 O 1.21623 * 120.00223 * 359.97438 * 9 8 5 11 11 C 1.47229 * 119.99919 * 179.97438 * 9 8 5 12 12 C 1.37010 * 127.18905 * 179.68028 * 11 9 8 13 13 N 1.33324 * 106.37031 * 179.90828 * 12 11 9 14 14 N 1.28504 * 109.44212 * 0.37314 * 13 12 11 15 15 N 1.28716 * 110.63857 * 359.76530 * 14 13 12 16 16 H 0.97006 * 126.03548 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 18 18 C 1.36944 * 120.00017 * 275.00375 * 17 2 1 19 19 H 1.07997 * 119.99813 * 359.97438 * 18 17 2 20 20 C 1.38806 * 119.99784 * 180.02562 * 18 17 2 21 21 N 1.31621 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46961 * 89.99726 * 22 20 18 24 24 H 1.48493 * 109.47324 * 209.99682 * 22 20 18 25 25 H 1.48503 * 109.47003 * 329.99890 * 22 20 18 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.09003 * 109.47157 * 60.00578 * 7 5 4 32 32 H 1.09004 * 109.47194 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47945 * 300.00623 * 7 5 4 34 34 H 0.97000 * 120.00512 * 24.99540 * 8 5 4 35 35 H 1.08002 * 126.81493 * 0.02562 * 12 11 9 36 36 H 0.96995 * 120.00293 * 94.99410 * 17 2 1 37 37 H 0.96997 * 120.00066 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3343 -0.1823 9 6 5.3748 -0.9912 0.2734 10 8 5.9880 -0.0833 -0.2547 11 6 5.9663 -1.7153 1.4107 12 6 7.1902 -1.4958 1.9860 13 7 7.3031 -2.3796 2.9778 14 7 6.2446 -3.1065 3.0256 15 7 5.4103 -2.7538 2.1110 16 1 4.5413 -3.1523 1.9469 17 7 2.0184 -0.6906 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8926 1.0405 2.4242 20 6 2.6122 -0.6617 3.5090 21 7 2.9253 -1.9388 3.4500 22 14 2.7912 0.2703 5.1180 23 1 1.5237 0.1791 5.8865 24 1 3.8960 -0.3228 5.9134 25 1 3.0960 1.6956 4.8332 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1370 31 1 3.6264 -0.6887 -3.4657 32 1 5.1509 -1.1486 -2.6696 33 1 3.7723 -2.2742 -2.6699 34 1 3.6647 -2.0585 0.2387 35 1 7.9182 -0.7530 1.6950 36 1 2.2490 -1.6317 1.1527 37 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134844097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:25 Heat of formation + Delta-G solvation = 62.914091 kcal Electronic energy + Delta-G solvation = -21600.976221 eV Core-core repulsion = 18415.753109 eV Total energy + Delta-G solvation = -3185.223112 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.66380 -39.34915 -36.95456 -34.40151 -33.11159 -32.22918 -31.23378 -30.13252 -28.66906 -26.48339 -24.05506 -23.83780 -22.33880 -21.14201 -20.46370 -20.02615 -18.53471 -17.36181 -16.12543 -16.07429 -15.66162 -15.01808 -14.40475 -14.09216 -13.97984 -13.71094 -13.57765 -13.07312 -12.86590 -12.27515 -12.11409 -11.89551 -11.80419 -11.57492 -11.16465 -10.94464 -10.87182 -10.75790 -10.52096 -10.36354 -10.07751 -10.06088 -9.84152 -9.68788 -9.14207 -8.94491 -8.60393 -7.14199 -6.03949 -3.25574 1.55722 2.87315 3.16846 3.35565 3.42641 3.45629 3.47494 3.70776 4.46886 4.88981 4.96691 5.18353 5.28457 5.34479 5.39318 5.53138 5.55006 5.73652 5.79179 5.84070 5.86782 5.99643 6.10633 6.22153 6.27167 6.39860 6.44809 6.48660 6.71258 6.84255 6.94676 7.33654 7.55667 7.83207 8.20962 8.51046 8.89243 9.33411 9.83567 10.19221 11.22105 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.011323 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.198477 B = 2472.217215 C = 4127.044669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.168 3.832 3 H 0.050 0.950 4 C -0.134 4.134 5 C 0.151 3.849 6 H 0.088 0.912 7 C -0.164 4.164 8 N -0.692 5.692 9 C 0.608 3.392 10 O -0.540 6.540 11 C -0.054 4.054 12 C 0.011 3.989 13 N -0.291 5.291 14 N -0.052 5.052 15 N -0.327 5.327 16 H 0.457 0.543 17 N -0.717 5.717 18 C -0.222 4.222 19 H 0.069 0.931 20 C -0.008 4.008 21 N -0.947 5.947 22 Si 0.904 3.096 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.284 1.284 26 H 0.037 0.963 27 H 0.045 0.955 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.054 0.946 34 H 0.399 0.601 35 H 0.193 0.807 36 H 0.373 0.627 37 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.064 -1.367 -10.701 10.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 H 0.068 0.932 4 C -0.173 4.173 5 C 0.046 3.954 6 H 0.106 0.894 7 C -0.222 4.222 8 N -0.344 5.344 9 C 0.392 3.608 10 O -0.416 6.416 11 C -0.190 4.190 12 C -0.150 4.150 13 N -0.155 5.155 14 N -0.035 5.035 15 N -0.056 5.056 16 H 0.307 0.693 17 N -0.360 5.360 18 C -0.353 4.353 19 H 0.087 0.913 20 C -0.203 4.203 21 N -0.598 5.598 22 Si 0.736 3.264 23 H -0.219 1.219 24 H -0.217 1.217 25 H -0.210 1.210 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.236 0.764 35 H 0.210 0.790 36 H 0.207 0.793 37 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.743 -1.482 -9.770 9.910 hybrid contribution -1.099 0.418 0.401 1.243 sum -0.356 -1.063 -9.369 9.436 Atomic orbital electron populations 1.22406 0.99068 1.00784 1.00082 1.20324 0.91831 0.95850 0.86177 0.93151 1.22227 0.93715 1.01724 0.99634 1.20891 0.92644 0.97409 0.84452 0.89386 1.22219 1.01971 1.00899 0.97110 1.45874 1.17202 1.37468 1.33884 1.16644 0.81304 0.82195 0.80668 1.90771 1.62169 1.29961 1.58748 1.22196 0.97252 0.97774 1.01819 1.23647 0.96230 1.00680 0.94456 1.74862 1.16060 1.06363 1.18260 1.78064 0.96241 1.20611 1.08582 1.45612 1.17394 1.22542 1.20045 0.69298 1.42447 1.78091 1.09880 1.05595 1.19248 1.35029 0.93905 0.87130 0.91276 1.24471 1.02130 0.95934 0.97763 1.69306 1.52374 1.08686 1.29418 0.86212 0.77290 0.78935 0.83984 1.21860 1.21685 1.20977 0.94439 0.93588 0.92816 0.91680 0.90419 0.91778 0.92185 0.92739 0.76382 0.79029 0.79250 0.93242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 9.49 37.16 0.35 -2.21 16 2 C 0.17 2.82 2.89 -67.93 -0.20 2.62 16 3 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 4 C -0.13 -1.76 4.43 -26.73 -0.12 -1.88 16 5 C 0.15 2.13 2.57 -67.93 -0.17 1.95 16 6 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 7 C -0.16 -1.91 9.48 37.16 0.35 -1.55 16 8 N -0.69 -11.06 3.80 -54.95 -0.21 -11.26 16 9 C 0.61 11.22 7.77 -12.61 -0.10 11.12 16 10 O -0.54 -11.02 16.59 5.26 0.09 -10.93 16 11 C -0.05 -1.01 7.17 -82.33 -0.59 -1.60 16 12 C 0.01 0.20 11.87 -17.35 -0.21 -0.01 16 13 N -0.29 -5.81 12.35 30.48 0.38 -5.43 16 14 N -0.05 -1.05 13.35 60.35 0.81 -0.24 16 15 N -0.33 -6.02 6.44 33.31 0.21 -5.81 16 16 H 0.46 7.93 7.49 -190.32 -1.42 6.51 16 17 N -0.72 -14.67 3.84 -53.42 -0.21 -14.88 16 18 C -0.22 -5.43 9.93 -15.06 -0.15 -5.58 16 19 H 0.07 1.74 7.83 -52.49 -0.41 1.33 16 20 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 21 N -0.95 -23.49 11.67 55.49 0.65 -22.84 16 22 Si 0.90 21.91 29.55 -169.99 -5.02 16.89 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 24 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.40 6.26 5.77 -40.82 -0.24 6.03 16 35 H 0.19 3.02 8.06 -52.49 -0.42 2.59 16 36 H 0.37 7.63 5.70 -40.82 -0.23 7.40 16 37 H 0.26 6.63 8.31 -40.82 -0.34 6.29 16 LS Contribution 313.95 15.07 4.73 4.73 Total: -1.00 -27.78 313.95 -5.56 -33.34 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -6.06 Total: 13.88 kcal Atomic # 6 Polarization: 3.48 SS G_CDS: -0.92 Total: 2.56 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 1.63 Total: -60.46 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: 0.09 Total: -10.93 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -5.02 Total: 16.89 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -27.78 -5.56 -33.34 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134844097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.250 kcal (2) G-P(sol) polarization free energy of solvation -27.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.336 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds