Wall clock time and date at job start Mon Mar 30 2020 00:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46801 * 2 1 4 4 C 1.52997 * 109.47127 * 239.99728 * 2 1 3 5 5 C 1.53001 * 109.46997 * 174.99904 * 4 2 1 6 6 H 1.08993 * 109.47488 * 305.00558 * 5 4 2 7 7 C 1.52995 * 109.46862 * 184.99826 * 5 4 2 8 8 N 1.46504 * 109.46769 * 65.00614 * 5 4 2 9 9 C 1.34776 * 119.99674 * 204.99901 * 8 5 4 10 10 O 1.21623 * 120.00223 * 359.97438 * 9 8 5 11 11 C 1.47229 * 119.99919 * 179.97438 * 9 8 5 12 12 C 1.37010 * 127.18905 * 179.68028 * 11 9 8 13 13 N 1.33324 * 106.37031 * 179.90828 * 12 11 9 14 14 N 1.28504 * 109.44212 * 0.37314 * 13 12 11 15 15 N 1.28716 * 110.63857 * 359.76530 * 14 13 12 16 16 H 0.97006 * 126.03548 * 180.02562 * 15 14 13 17 17 N 1.46500 * 109.46998 * 119.99942 * 2 1 3 18 18 C 1.36944 * 120.00017 * 275.00375 * 17 2 1 19 19 H 1.07997 * 119.99813 * 359.97438 * 18 17 2 20 20 C 1.38806 * 119.99784 * 180.02562 * 18 17 2 21 21 N 1.31621 * 120.00406 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99911 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.46961 * 89.99726 * 22 20 18 24 24 H 1.48493 * 109.47324 * 209.99682 * 22 20 18 25 25 H 1.48503 * 109.47003 * 329.99890 * 22 20 18 26 26 H 1.09001 * 109.47002 * 59.99846 * 1 2 3 27 27 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47050 * 300.00112 * 1 2 3 29 29 H 1.08993 * 109.47322 * 295.00205 * 4 2 1 30 30 H 1.09002 * 109.47196 * 55.00329 * 4 2 1 31 31 H 1.09003 * 109.47157 * 60.00578 * 7 5 4 32 32 H 1.09004 * 109.47194 * 180.02562 * 7 5 4 33 33 H 1.09002 * 109.47945 * 300.00623 * 7 5 4 34 34 H 0.97000 * 120.00512 * 24.99540 * 8 5 4 35 35 H 1.08002 * 126.81493 * 0.02562 * 12 11 9 36 36 H 0.96995 * 120.00293 * 94.99410 * 17 2 1 37 37 H 0.96997 * 120.00066 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 1 3.8571 0.4357 -1.2677 7 6 4.0645 -1.2251 -2.6239 8 7 4.1537 -1.3343 -0.1823 9 6 5.3748 -0.9912 0.2734 10 8 5.9880 -0.0833 -0.2547 11 6 5.9663 -1.7153 1.4107 12 6 7.1902 -1.4958 1.9860 13 7 7.3031 -2.3796 2.9778 14 7 6.2446 -3.1065 3.0256 15 7 5.4103 -2.7538 2.1110 16 1 4.5413 -3.1523 1.9469 17 7 2.0184 -0.6906 1.1962 18 6 2.1491 -0.0074 2.3758 19 1 1.8926 1.0405 2.4242 20 6 2.6122 -0.6617 3.5090 21 7 2.9253 -1.9388 3.4500 22 14 2.7912 0.2703 5.1180 23 1 1.5237 0.1791 5.8865 24 1 3.8960 -0.3228 5.9134 25 1 3.0960 1.6956 4.8332 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.7517 -1.7715 -1.2055 30 1 1.6055 -0.2618 -2.1370 31 1 3.6264 -0.6887 -3.4657 32 1 5.1509 -1.1486 -2.6696 33 1 3.7723 -2.2742 -2.6699 34 1 3.6647 -2.0585 0.2387 35 1 7.9182 -0.7530 1.6950 36 1 2.2490 -1.6317 1.1527 37 1 3.2486 -2.3960 4.2420 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134844097.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:24 Heat of formation + Delta-G solvation = 43.866341 kcal Electronic energy + Delta-G solvation = -21601.802193 eV Core-core repulsion = 18415.753109 eV Total energy + Delta-G solvation = -3186.049085 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.16001 -40.72762 -38.35932 -35.89326 -34.63754 -33.83797 -32.68264 -31.54884 -30.20097 -27.59749 -25.62341 -25.48460 -23.81591 -22.49376 -21.77160 -21.42813 -19.96042 -19.16341 -17.56815 -17.39619 -17.14744 -16.70424 -15.88589 -15.61453 -15.48374 -15.20640 -15.08587 -14.35588 -14.20571 -13.61419 -13.34283 -13.25644 -13.09412 -12.93056 -12.79624 -12.66019 -12.31895 -12.27283 -12.21679 -11.72588 -11.65874 -11.57417 -11.42884 -11.15285 -10.93209 -10.45931 -9.95218 -8.88482 -7.98493 -5.14012 0.07857 1.36172 1.38492 1.45249 1.47094 1.71871 2.09790 2.29974 2.53997 3.40664 3.51167 3.71032 3.89723 4.00073 4.12577 4.17511 4.34768 4.38373 4.58042 4.69000 4.85719 4.89111 4.91251 5.05890 5.09171 5.14598 5.16915 5.39621 5.41602 5.55767 5.60132 5.67350 5.89049 6.30141 6.47022 7.11388 7.38025 7.40813 8.10606 8.38383 9.24490 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012787 B = 0.011323 C = 0.006783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.198477 B = 2472.217215 C = 4127.044669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.160 3.840 3 H 0.033 0.967 4 C -0.121 4.121 5 C 0.146 3.854 6 H 0.066 0.934 7 C -0.154 4.154 8 N -0.683 5.683 9 C 0.604 3.396 10 O -0.564 6.564 11 C -0.061 4.061 12 C 0.008 3.992 13 N -0.306 5.306 14 N -0.070 5.070 15 N -0.318 5.318 16 H 0.460 0.540 17 N -0.719 5.719 18 C -0.214 4.214 19 H 0.057 0.943 20 C -0.045 4.045 21 N -0.943 5.943 22 Si 0.934 3.066 23 H -0.293 1.293 24 H -0.310 1.310 25 H -0.288 1.288 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.027 0.973 29 H 0.079 0.921 30 H 0.113 0.887 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.069 0.931 34 H 0.402 0.598 35 H 0.215 0.785 36 H 0.374 0.626 37 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.061 -1.570 -12.810 12.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.052 3.948 3 H 0.052 0.948 4 C -0.159 4.159 5 C 0.042 3.958 6 H 0.084 0.916 7 C -0.212 4.212 8 N -0.333 5.333 9 C 0.388 3.612 10 O -0.442 6.442 11 C -0.197 4.197 12 C -0.154 4.154 13 N -0.170 5.170 14 N -0.052 5.052 15 N -0.046 5.046 16 H 0.311 0.689 17 N -0.361 5.361 18 C -0.346 4.346 19 H 0.075 0.925 20 C -0.239 4.239 21 N -0.595 5.595 22 Si 0.768 3.232 23 H -0.221 1.221 24 H -0.237 1.237 25 H -0.214 1.214 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.098 0.902 30 H 0.131 0.869 31 H 0.108 0.892 32 H 0.062 0.938 33 H 0.088 0.912 34 H 0.239 0.761 35 H 0.232 0.768 36 H 0.208 0.792 37 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.297 -1.687 -11.908 12.030 hybrid contribution -0.839 0.545 0.999 1.414 sum -1.136 -1.142 -10.908 11.027 Atomic orbital electron populations 1.22272 0.97704 1.01048 1.00417 1.20542 0.92681 0.95184 0.86408 0.94850 1.22152 0.92573 1.02350 0.98804 1.21085 0.93448 0.96290 0.84973 0.91561 1.22133 1.00948 1.01978 0.96172 1.45930 1.16266 1.37136 1.34013 1.16667 0.81949 0.81988 0.80557 1.90754 1.62928 1.31022 1.59530 1.22390 0.97473 0.97809 1.02060 1.24093 0.96728 1.00670 0.93863 1.74838 1.16263 1.06914 1.18951 1.78030 0.96686 1.21235 1.09248 1.45531 1.17287 1.22284 1.19545 0.68863 1.42499 1.78109 1.09873 1.05659 1.19284 1.33387 0.93494 0.88451 0.92500 1.24745 1.03777 0.96625 0.98715 1.69351 1.53142 1.08398 1.28621 0.85734 0.76258 0.78117 0.83101 1.22126 1.23725 1.21403 0.91225 0.93287 0.95408 0.90249 0.86917 0.89249 0.93845 0.91226 0.76118 0.76841 0.79172 0.94297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.42 9.49 71.98 0.68 -3.74 16 2 C 0.16 5.01 2.89 44.99 0.13 5.14 16 3 H 0.03 1.17 8.08 -2.39 -0.02 1.15 16 4 C -0.12 -2.70 4.43 30.59 0.14 -2.56 16 5 C 0.15 3.76 2.57 44.99 0.12 3.87 16 6 H 0.07 2.04 7.58 -2.39 -0.02 2.02 16 7 C -0.15 -3.08 9.48 71.98 0.68 -2.40 16 8 N -0.68 -20.77 3.80 -446.00 -1.69 -22.46 16 9 C 0.60 21.87 7.77 86.61 0.67 22.54 16 10 O -0.56 -22.71 16.59 -4.10 -0.07 -22.78 16 11 C -0.06 -2.24 7.17 40.41 0.29 -1.95 16 12 C 0.01 0.27 11.87 84.18 1.00 1.27 16 13 N -0.31 -12.14 12.35 -57.49 -0.71 -12.85 16 14 N -0.07 -2.78 13.35 37.02 0.49 -2.28 16 15 N -0.32 -11.57 6.44 -48.52 -0.31 -11.88 16 16 H 0.46 15.78 7.49 -219.89 -1.65 14.13 16 17 N -0.72 -28.42 3.84 -322.93 -1.24 -29.66 16 18 C -0.21 -10.33 9.93 84.03 0.83 -9.50 16 19 H 0.06 2.87 7.83 -2.91 -0.02 2.85 16 20 C -0.04 -2.27 5.50 84.86 0.47 -1.81 16 21 N -0.94 -46.45 11.67 21.65 0.25 -46.20 16 22 Si 0.93 45.18 29.55 68.60 2.03 47.21 16 23 H -0.29 -14.15 7.11 99.48 0.71 -13.45 16 24 H -0.31 -15.88 7.11 99.48 0.71 -15.18 16 25 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 26 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 30 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 31 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.40 11.92 5.77 -92.71 -0.54 11.38 16 35 H 0.21 6.55 8.06 -2.91 -0.02 6.52 16 36 H 0.37 14.67 5.70 -92.71 -0.53 14.14 16 37 H 0.25 12.74 8.31 -92.71 -0.77 11.96 16 Total: -1.00 -59.17 313.95 2.16 -57.01 By element: Atomic # 1 Polarization: 34.63 SS G_CDS: -1.60 Total: 33.03 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 5.01 Total: 10.87 kcal Atomic # 7 Polarization: -122.12 SS G_CDS: -3.21 Total: -125.33 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: -0.07 Total: -22.78 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -59.17 2.16 -57.01 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134844097.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.874 kcal (2) G-P(sol) polarization free energy of solvation -59.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds