Wall clock time and date at job start Mon Mar 30 2020 00:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08997 * 109.47716 * 2 1 4 4 C 1.53007 * 109.47308 * 240.00059 * 2 1 3 5 5 C 1.52997 * 109.47188 * 175.00223 * 4 2 1 6 6 H 1.08997 * 109.47124 * 304.99818 * 5 4 2 7 7 C 1.52999 * 109.46830 * 184.99950 * 5 4 2 8 8 N 1.46500 * 109.47211 * 65.00118 * 5 4 2 9 9 C 1.34778 * 119.99613 * 205.00001 * 8 5 4 10 10 O 1.21545 * 120.00344 * 359.97438 * 9 8 5 11 11 C 1.47871 * 119.99759 * 180.02562 * 9 8 5 12 12 N 1.34549 * 126.05149 * 179.97438 * 11 9 8 13 13 C 1.30862 * 107.27315 * 179.97438 * 12 11 9 14 14 N 1.34584 * 107.62652 * 0.02562 * 13 12 11 15 15 H 0.97000 * 125.75481 * 179.73959 * 14 13 12 16 16 N 1.28852 * 108.50061 * 359.97438 * 14 13 12 17 17 N 1.46498 * 109.47391 * 120.00234 * 2 1 3 18 18 C 1.36938 * 120.00052 * 275.00258 * 17 2 1 19 19 H 1.08003 * 119.99821 * 359.97438 * 18 17 2 20 20 C 1.38813 * 120.00102 * 179.97438 * 18 17 2 21 21 N 1.31617 * 120.00241 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99714 * 179.97438 * 20 18 17 23 23 H 1.48495 * 109.47139 * 59.99861 * 22 20 18 24 24 H 1.48503 * 109.46648 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47300 * 299.99579 * 22 20 18 26 26 H 1.09006 * 109.47316 * 59.99834 * 1 2 3 27 27 H 1.08997 * 109.47716 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47466 * 300.00216 * 1 2 3 29 29 H 1.09003 * 109.46629 * 55.00055 * 4 2 1 30 30 H 1.08997 * 109.46879 * 295.00225 * 4 2 1 31 31 H 1.09005 * 109.47038 * 179.97438 * 7 5 4 32 32 H 1.09003 * 109.47586 * 299.99712 * 7 5 4 33 33 H 1.09007 * 109.47101 * 59.99852 * 7 5 4 34 34 H 0.97001 * 120.00073 * 24.99908 * 8 5 4 35 35 H 1.07997 * 126.19071 * 179.97438 * 13 12 11 36 36 H 0.97001 * 120.00420 * 94.99351 * 17 2 1 37 37 H 0.96997 * 120.00246 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5648 -0.6133 -1.3137 6 1 3.8570 0.4357 -1.2678 7 6 4.0644 -1.2251 -2.6240 8 7 4.1536 -1.3343 -0.1824 9 6 5.3747 -0.9911 0.2733 10 8 5.9876 -0.0839 -0.2545 11 6 5.9693 -1.7192 1.4148 12 7 7.1734 -1.4804 1.9657 13 6 7.3283 -2.3335 2.9458 14 7 6.2220 -3.0980 2.9995 15 1 6.0610 -3.8186 3.6284 16 7 5.4147 -2.7145 2.0713 17 7 2.0183 -0.6906 1.1961 18 6 2.1491 -0.0076 2.3757 19 1 1.8925 1.0404 2.4242 20 6 2.6113 -0.6621 3.5092 21 7 2.9235 -1.9394 3.4504 22 14 2.7904 0.2700 5.1182 23 1 1.4684 0.8078 5.5285 24 1 3.2981 -0.6488 6.1686 25 1 3.7464 1.3917 4.9368 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6053 -0.2617 -2.1370 30 1 1.7516 -1.7715 -1.2056 31 1 5.1507 -1.1478 -2.6701 32 1 3.7722 -2.2742 -2.6700 33 1 3.6262 -0.6886 -3.4658 34 1 3.6646 -2.0586 0.2386 35 1 8.1888 -2.4108 3.5939 36 1 2.2489 -1.6318 1.1526 37 1 3.2468 -2.3966 4.2423 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135706405.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:38:34 Heat of formation + Delta-G solvation = 43.815553 kcal Electronic energy + Delta-G solvation = -21544.302965 eV Core-core repulsion = 18358.251678 eV Total energy + Delta-G solvation = -3186.051287 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -44.14141 -40.59219 -38.24976 -35.76806 -34.15578 -34.04061 -32.73923 -31.42329 -30.13037 -27.57298 -25.68087 -25.50165 -23.64391 -22.21482 -21.66786 -21.01679 -19.56731 -19.05143 -18.15114 -17.23984 -17.01385 -16.63048 -15.72596 -15.62865 -15.51805 -15.31683 -14.89521 -14.28887 -14.14389 -13.56032 -13.29669 -13.19594 -12.89962 -12.84767 -12.76650 -12.60850 -12.27585 -12.16955 -11.70226 -11.56898 -11.50427 -11.38945 -11.29009 -11.07122 -10.84477 -10.43777 -9.84685 -8.74118 -7.74569 -4.97600 0.67374 1.37257 1.40544 1.41884 1.47349 1.96049 2.30348 2.60340 2.62084 3.50808 3.54367 3.76517 3.86639 4.07350 4.20181 4.25574 4.41200 4.59778 4.71873 4.86999 4.90575 4.94319 5.09773 5.14918 5.17461 5.20133 5.39471 5.44842 5.56354 5.64038 5.65753 5.74398 6.15446 6.43254 6.62568 7.22479 7.40821 7.52327 8.25611 8.52878 9.42614 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.012794 B = 0.011305 C = 0.006764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2188.065114 B = 2476.268279 C = 4138.338966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.159 3.841 3 H 0.027 0.973 4 C -0.118 4.118 5 C 0.143 3.857 6 H 0.059 0.941 7 C -0.152 4.152 8 N -0.671 5.671 9 C 0.615 3.385 10 O -0.579 6.579 11 C 0.109 3.891 12 N -0.519 5.519 13 C 0.193 3.807 14 N -0.383 5.383 15 H 0.464 0.536 16 N -0.219 5.219 17 N -0.718 5.718 18 C -0.239 4.239 19 H 0.048 0.952 20 C -0.044 4.044 21 N -0.910 5.910 22 Si 0.933 3.067 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.306 1.306 26 H 0.069 0.931 27 H 0.048 0.952 28 H 0.026 0.974 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.409 0.591 35 H 0.277 0.723 36 H 0.376 0.624 37 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.742 -6.234 -5.823 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.051 3.949 3 H 0.045 0.955 4 C -0.156 4.156 5 C 0.039 3.961 6 H 0.077 0.923 7 C -0.210 4.210 8 N -0.323 5.323 9 C 0.398 3.602 10 O -0.457 6.457 11 C -0.170 4.170 12 N -0.245 5.245 13 C -0.104 4.104 14 N -0.109 5.109 15 H 0.313 0.687 16 N -0.060 5.060 17 N -0.362 5.362 18 C -0.372 4.372 19 H 0.067 0.933 20 C -0.240 4.240 21 N -0.559 5.559 22 Si 0.765 3.235 23 H -0.216 1.216 24 H -0.217 1.217 25 H -0.234 1.234 26 H 0.088 0.912 27 H 0.067 0.933 28 H 0.046 0.954 29 H 0.132 0.868 30 H 0.096 0.904 31 H 0.057 0.943 32 H 0.088 0.912 33 H 0.110 0.890 34 H 0.248 0.752 35 H 0.292 0.708 36 H 0.210 0.790 37 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.762 -5.349 -6.478 8.843 hybrid contribution 0.109 -0.181 2.363 2.373 sum 2.871 -5.531 -4.114 7.467 Atomic orbital electron populations 1.22253 0.97572 1.00999 1.00331 1.20513 0.92853 0.94860 0.86675 0.95512 1.22136 0.92343 1.02263 0.98903 1.21086 0.93706 0.95994 0.85266 0.92277 1.22121 1.00649 1.02013 0.96216 1.45794 1.15918 1.37064 1.33500 1.16528 0.81851 0.81516 0.80321 1.90672 1.63334 1.31727 1.59969 1.23633 0.92233 0.99116 1.02006 1.71108 1.17361 1.25183 1.10806 1.27449 0.94872 0.89750 0.98289 1.45139 1.12063 1.28585 1.25114 0.68663 1.74475 1.16773 1.13850 1.00931 1.42458 1.78197 1.09955 1.05554 1.19131 1.36032 0.93183 0.88839 0.93348 1.24978 1.03374 0.96884 0.98743 1.69736 1.50769 1.07711 1.27679 0.85877 0.76971 0.77679 0.82927 1.21590 1.21683 1.23438 0.91164 0.93285 0.95439 0.86793 0.90417 0.94323 0.91180 0.88953 0.75207 0.70782 0.78962 0.94621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.49 71.98 0.68 -4.31 16 2 C 0.16 5.92 2.89 44.99 0.13 6.05 16 3 H 0.03 1.10 8.08 -2.39 -0.02 1.08 16 4 C -0.12 -3.35 4.43 30.60 0.14 -3.21 16 5 C 0.14 4.73 2.57 44.99 0.12 4.84 16 6 H 0.06 2.26 7.58 -2.39 -0.02 2.25 16 7 C -0.15 -3.96 9.48 71.98 0.68 -3.28 16 8 N -0.67 -26.41 3.80 -445.40 -1.69 -28.10 16 9 C 0.61 28.34 7.80 86.79 0.68 29.02 16 10 O -0.58 -29.67 16.75 -3.86 -0.06 -29.74 16 11 C 0.11 4.78 7.96 137.13 1.09 5.87 16 12 N -0.52 -20.90 11.41 -193.04 -2.20 -23.10 16 13 C 0.19 5.29 13.14 180.30 2.37 7.66 16 14 N -0.38 -10.92 6.93 -60.38 -0.42 -11.33 16 15 H 0.46 9.11 8.96 -219.80 -1.97 7.14 16 16 N -0.22 -8.50 11.26 -52.44 -0.59 -9.09 16 17 N -0.72 -33.18 3.84 -322.95 -1.24 -34.42 16 18 C -0.24 -12.91 9.93 84.03 0.83 -12.08 16 19 H 0.05 2.71 7.83 -2.91 -0.02 2.69 16 20 C -0.04 -2.39 5.50 84.86 0.47 -1.92 16 21 N -0.91 -47.98 12.33 21.65 0.27 -47.72 16 22 Si 0.93 46.02 29.55 68.60 2.03 48.04 16 23 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 24 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 25 H -0.31 -15.82 7.11 99.48 0.71 -15.12 16 26 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 27 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 28 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 29 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 32 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.41 16.37 6.21 -92.71 -0.58 15.80 16 35 H 0.28 3.71 8.06 -2.91 -0.02 3.69 16 36 H 0.38 17.78 5.70 -92.71 -0.53 17.25 16 37 H 0.24 12.66 8.31 -92.71 -0.77 11.89 16 Total: -1.00 -74.83 316.26 1.31 -73.52 By element: Atomic # 1 Polarization: 35.25 SS G_CDS: -1.96 Total: 33.28 kcal Atomic # 6 Polarization: 21.46 SS G_CDS: 7.19 Total: 28.64 kcal Atomic # 7 Polarization: -147.88 SS G_CDS: -5.88 Total: -153.76 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -0.06 Total: -29.74 kcal Atomic # 14 Polarization: 46.02 SS G_CDS: 2.03 Total: 48.04 kcal Total: -74.83 1.31 -73.52 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135706405.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.339 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds