Wall clock time and date at job start Mon Mar 30 2020 00:30:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47060 * 2 1 4 4 N 1.46500 * 109.47473 * 180.02562 * 3 2 1 5 5 C 1.34811 * 126.59309 * 124.70838 * 4 3 2 6 6 C 1.36595 * 106.83881 * 179.85454 * 5 4 3 7 7 C 1.47527 * 125.77268 * 180.18299 * 6 5 4 8 8 O 1.21592 * 119.99730 * 0.30699 * 7 6 5 9 9 N 1.34780 * 119.99941 * 180.30218 * 7 6 5 10 10 C 1.46496 * 119.99736 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.46907 * 180.02562 * 10 9 7 12 12 N 1.46505 * 109.46979 * 180.02562 * 11 10 9 13 13 C 1.36937 * 119.99630 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00320 * 0.02562 * 13 12 11 15 15 C 1.38818 * 119.99839 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99687 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 120.00206 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47399 * 59.99456 * 17 15 13 19 19 H 1.48502 * 109.47214 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46793 * 299.99674 * 17 15 13 21 21 N 1.34400 * 108.45728 * 0.42161 * 6 5 4 22 22 N 1.28758 * 109.52493 * 359.74123 * 21 6 5 23 23 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47194 * 299.99650 * 1 2 3 25 25 H 1.08992 * 109.47399 * 59.99823 * 1 2 3 26 26 H 1.09002 * 109.47398 * 120.00169 * 2 1 3 27 27 H 1.09001 * 109.47194 * 240.00350 * 2 1 3 28 28 H 1.09002 * 109.47153 * 300.00319 * 3 2 1 29 29 H 1.08998 * 109.47533 * 59.99948 * 3 2 1 30 30 H 1.07999 * 126.58097 * 0.02562 * 5 4 3 31 31 H 0.96998 * 119.99858 * 0.02562 * 9 7 6 32 32 H 1.08996 * 109.47449 * 300.00731 * 10 9 7 33 33 H 1.08997 * 109.47022 * 60.00933 * 10 9 7 34 34 H 1.08996 * 109.47366 * 300.00418 * 11 10 9 35 35 H 1.08997 * 109.46814 * 60.00442 * 11 10 9 36 36 H 0.96995 * 119.99842 * 0.02562 * 12 11 10 37 37 H 0.97001 * 119.99894 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 -0.0006 5 6 4.3082 2.0591 -0.8906 6 6 5.5939 1.7990 -0.5098 7 6 6.8098 2.2788 -1.1938 8 8 6.7144 2.9750 -2.1861 9 7 8.0263 1.9454 -0.7188 10 6 9.2336 2.4214 -1.3984 11 6 10.4709 1.9040 -0.6619 12 7 11.6783 2.3806 -1.3412 13 6 12.9142 2.0420 -0.8584 14 1 12.9989 1.4233 0.0227 15 6 14.0583 2.4939 -1.5017 16 7 13.9551 3.2474 -2.5759 17 14 15.7443 2.0315 -0.8437 18 1 15.8896 0.5537 -0.8493 19 1 16.7939 2.6349 -1.7037 20 1 15.8896 2.5379 0.5447 21 7 5.5641 1.0277 0.5904 22 7 4.3413 0.7963 0.9207 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8934 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.6766 1.9563 -0.8900 29 1 1.6767 1.9564 0.8899 30 1 3.9952 2.6481 -1.7400 31 1 8.1023 1.3898 0.0726 32 1 9.2418 2.0540 -2.4245 33 1 9.2423 3.5114 -1.4027 34 1 10.4629 2.2712 0.3643 35 1 10.4620 0.8141 -0.6580 36 1 11.6022 2.9365 -2.1324 37 1 14.7545 3.5636 -3.0252 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135972857.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:04 Heat of formation + Delta-G solvation = 62.545029 kcal Electronic energy + Delta-G solvation = -18977.169215 eV Core-core repulsion = 15791.930099 eV Total energy + Delta-G solvation = -3185.239116 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.41091 -39.22264 -36.41685 -35.64850 -33.82561 -32.99479 -31.42849 -30.81944 -28.03660 -27.17965 -24.22098 -23.34222 -22.74062 -21.88544 -21.37943 -20.25699 -18.25701 -17.21283 -16.55584 -16.34007 -15.77097 -15.56015 -15.07190 -14.91470 -14.49397 -14.12609 -13.84352 -13.61065 -13.18586 -13.11378 -12.84452 -12.64544 -12.43167 -12.07061 -11.61911 -11.39972 -11.34292 -11.05134 -10.78003 -10.75647 -10.61675 -10.16850 -10.03588 -9.70286 -9.50078 -8.93109 -8.76470 -6.94473 -5.75055 -3.05371 0.91292 1.60496 1.72604 3.23743 3.32957 3.46760 3.50747 3.52224 3.84945 4.03630 4.14903 4.43043 4.56433 4.62783 4.64106 4.75576 4.81391 4.96743 5.11672 5.37906 5.40922 5.53953 5.55040 5.59389 5.67159 5.82752 6.02094 6.07740 6.20059 6.53010 6.77406 6.79677 7.54813 7.70671 7.82210 8.28775 8.42800 9.53924 10.08884 10.44008 11.47524 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.063112 B = 0.002556 C = 0.002483 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 443.548676 B =10950.774529 C =11275.245019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.139 4.139 3 C 0.121 3.879 4 N -0.363 5.363 5 C 0.092 3.908 6 C -0.097 4.097 7 C 0.601 3.399 8 O -0.541 6.541 9 N -0.706 5.706 10 C 0.111 3.889 11 C 0.143 3.857 12 N -0.729 5.729 13 C -0.243 4.243 14 H 0.072 0.928 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.911 3.089 18 H -0.285 1.285 19 H -0.291 1.291 20 H -0.285 1.285 21 N -0.204 5.204 22 N -0.065 5.065 23 H 0.065 0.935 24 H 0.060 0.940 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.072 0.928 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.205 0.795 31 H 0.408 0.592 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.026 0.974 35 H 0.026 0.974 36 H 0.386 0.614 37 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.271 -4.294 4.715 29.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.177 4.177 3 C 0.000 4.000 4 N -0.148 5.148 5 C -0.065 4.065 6 C -0.236 4.236 7 C 0.384 3.616 8 O -0.418 6.418 9 N -0.356 5.356 10 C -0.012 4.012 11 C 0.015 3.985 12 N -0.374 5.374 13 C -0.374 4.374 14 H 0.090 0.910 15 C -0.209 4.209 16 N -0.580 5.580 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.217 1.217 20 H -0.212 1.212 21 N -0.077 5.077 22 N -0.045 5.045 23 H 0.084 0.916 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.123 0.877 29 H 0.117 0.883 30 H 0.222 0.778 31 H 0.243 0.757 32 H 0.090 0.910 33 H 0.090 0.910 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.220 0.780 37 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -29.153 -4.723 5.343 30.012 hybrid contribution 0.750 0.323 -0.436 0.926 sum -28.402 -4.400 4.908 29.157 Atomic orbital electron populations 1.21705 0.93825 1.02914 1.02349 1.21840 0.96976 0.94564 1.04315 1.22161 0.72539 1.00112 1.05190 1.50565 1.08815 1.35410 1.20013 1.23395 0.90164 0.97101 0.95861 1.21557 0.94698 1.08268 0.99089 1.16725 0.81768 0.79954 0.83171 1.90816 1.86650 1.38667 1.25671 1.45726 1.05237 1.52874 1.31758 1.21638 0.82788 0.99887 0.96894 1.20769 0.85675 0.96920 0.95115 1.42174 1.00024 1.61920 1.33324 1.19165 0.83296 1.26225 1.08677 0.91040 1.24780 0.97944 1.00361 0.97862 1.69660 1.28240 1.39318 1.20769 0.86213 0.83836 0.77885 0.77900 1.21210 1.21660 1.21206 1.74656 1.12886 1.09964 1.10244 1.81962 0.93365 1.17268 1.11944 0.91607 0.92075 0.92200 0.89977 0.90975 0.87673 0.88300 0.77846 0.75707 0.90989 0.90980 0.95597 0.95592 0.78008 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.38 9.91 37.16 0.37 -0.02 16 2 C -0.14 -0.59 6.14 -26.73 -0.16 -0.76 16 3 C 0.12 0.51 6.54 -4.04 -0.03 0.48 16 4 N -0.36 -3.13 3.69 -61.06 -0.23 -3.36 16 5 C 0.09 0.88 11.27 -16.84 -0.19 0.69 16 6 C -0.10 -1.26 6.99 -83.55 -0.58 -1.84 16 7 C 0.60 9.34 7.82 -12.47 -0.10 9.25 16 8 O -0.54 -9.77 16.86 5.28 0.09 -9.68 16 9 N -0.71 -10.91 5.55 -61.35 -0.34 -11.25 16 10 C 0.11 1.99 5.79 -4.04 -0.02 1.97 16 11 C 0.14 2.93 6.37 -4.04 -0.03 2.90 16 12 N -0.73 -18.92 5.60 -59.91 -0.34 -19.26 16 13 C -0.24 -6.90 9.99 -15.06 -0.15 -7.06 16 14 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 15 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 16 N -0.93 -28.59 13.06 55.49 0.72 -27.86 16 17 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 19 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 N -0.20 -2.76 12.04 32.85 0.40 -2.37 16 22 N -0.07 -0.78 13.65 60.35 0.82 0.04 16 23 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.06 0.13 8.14 -51.93 -0.42 -0.29 16 25 H 0.06 0.11 8.14 -51.93 -0.42 -0.31 16 26 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.11 0.17 8.08 -51.93 -0.42 -0.25 16 29 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.20 1.31 8.06 -52.49 -0.42 0.89 16 31 H 0.41 5.69 8.16 -40.82 -0.33 5.36 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 33 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 34 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.39 10.51 7.67 -40.82 -0.31 10.20 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 327.17 15.07 4.93 4.93 Total: -1.00 -34.76 327.17 -5.21 -39.97 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.26 Total: 6.09 kcal Atomic # 6 Polarization: 6.12 SS G_CDS: -0.99 Total: 5.13 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: 1.04 Total: -64.05 kcal Atomic # 8 Polarization: -9.77 SS G_CDS: 0.09 Total: -9.68 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -34.76 -5.21 -39.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135972857.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.514 kcal (2) G-P(sol) polarization free energy of solvation -34.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.969 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds