Wall clock time and date at job start Mon Mar 30 2020 00:25:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 C 1.52995 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47135 * 174.86862 * 4 3 2 6 6 C 1.46899 * 110.99919 * 199.76144 * 5 4 3 7 7 C 1.50695 * 109.47118 * 66.04745 * 6 5 4 8 8 H 1.07996 * 120.00288 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00332 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99594 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47246 * 60.00379 * 11 9 7 13 13 H 1.48502 * 109.47008 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47332 * 300.00160 * 11 9 7 15 15 C 1.46900 * 110.99926 * 75.80922 * 5 4 3 16 16 C 1.50694 * 109.47448 * 199.67062 * 15 5 4 17 17 C 1.33386 * 125.20525 * 84.61378 * 16 15 5 18 18 C 1.38424 * 114.92041 * 179.79704 * 17 16 15 19 19 C 1.50700 * 122.54151 * 180.27662 * 18 17 16 20 20 C 1.33392 * 114.91946 * 0.43252 * 18 17 16 21 21 S 1.75876 * 109.59316 * 359.59363 * 20 18 17 22 22 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46810 * 300.00306 * 1 2 3 24 24 H 1.09001 * 109.46609 * 59.99853 * 1 2 3 25 25 H 1.08999 * 109.46810 * 239.99694 * 2 1 3 26 26 H 1.09001 * 109.46609 * 120.00147 * 2 1 3 27 27 H 1.09005 * 109.46874 * 59.99760 * 3 2 1 28 28 H 1.08998 * 109.47001 * 300.00264 * 3 2 1 29 29 H 1.09005 * 109.46781 * 54.87268 * 4 3 2 30 30 H 1.08997 * 109.47395 * 294.86940 * 4 3 2 31 31 H 1.09001 * 109.46891 * 186.05019 * 6 5 4 32 32 H 1.09008 * 109.47172 * 306.04519 * 6 5 4 33 33 H 0.96994 * 120.00404 * 179.97438 * 10 9 7 34 34 H 1.08993 * 109.47394 * 79.66384 * 15 5 4 35 35 H 1.09008 * 109.46985 * 319.66881 * 15 5 4 36 36 H 1.07991 * 122.54274 * 0.02968 * 17 16 15 37 37 H 1.09007 * 109.47294 * 270.19441 * 19 18 17 38 38 H 1.08999 * 109.47328 * 30.19354 * 19 18 17 39 39 H 1.09004 * 109.47284 * 150.19200 * 19 18 17 40 40 H 1.08007 * 125.20091 * 179.85908 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8218 -0.1232 6 6 5.4523 2.8461 -0.5904 7 6 5.5190 2.3141 -1.9988 8 1 4.6172 1.9908 -2.4972 9 6 6.7314 2.2412 -2.6514 10 7 7.8296 2.6354 -2.0447 11 14 6.8142 1.5812 -4.3969 12 1 5.9784 2.4272 -5.2862 13 1 8.2219 1.6058 -4.8692 14 1 6.3082 0.1853 -4.4229 15 6 3.9178 3.5469 1.1465 16 6 3.9596 5.0304 0.8852 17 6 2.9146 5.7778 0.5265 18 6 3.1932 7.1216 0.3458 19 6 2.1389 8.1215 -0.0537 20 6 4.4664 7.4639 0.5489 21 16 5.3939 6.0412 1.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.8509 -0.8397 30 1 3.9330 1.0104 0.9332 31 1 5.8243 3.8705 -0.5708 32 1 6.0654 2.2244 0.0623 33 1 8.6825 2.5838 -2.5037 34 1 4.7339 3.2725 1.8148 35 1 2.9659 3.2862 1.6093 36 1 1.9253 5.3664 0.3912 37 1 2.0904 8.1837 -1.1410 38 1 1.1714 7.8045 0.3355 39 1 2.3922 9.0997 0.3552 40 1 4.8656 8.4628 0.4521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001137157415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:42 Heat of formation + Delta-G solvation = 12.735115 kcal Electronic energy + Delta-G solvation = -18226.231678 eV Core-core repulsion = 15552.833105 eV Total energy + Delta-G solvation = -2673.398573 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.15450 -36.93456 -34.33960 -32.59976 -31.07590 -28.64937 -27.83529 -26.62784 -24.75999 -22.91604 -21.53301 -20.69628 -19.75835 -18.42507 -16.76005 -16.26447 -15.31938 -14.81414 -14.58416 -14.34050 -13.88923 -13.52970 -13.44607 -13.08972 -12.76867 -12.44573 -12.22979 -12.09333 -11.86703 -11.75454 -11.48129 -11.34513 -11.02274 -10.88153 -10.76925 -10.71661 -10.63063 -10.26800 -10.16931 -10.00244 -9.69111 -9.19366 -8.41560 -8.13504 -7.79712 -7.25298 -5.99256 -3.99996 1.48232 2.16044 2.53112 3.14027 3.34863 3.38892 3.42028 4.45105 4.88722 5.17569 5.23327 5.34684 5.35906 5.40575 5.42248 5.55948 5.67289 5.73426 5.77384 5.84071 5.94907 5.97254 6.02431 6.07296 6.12972 6.16379 6.20217 6.36851 6.47949 6.63426 6.73586 6.82704 6.84927 6.97667 7.33729 7.35357 7.82369 8.12387 8.22057 8.55909 9.06640 9.63255 11.11557 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.007569 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.269092 B = 3698.340235 C = 5589.479605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.113 4.113 4 C 0.061 3.939 5 N -0.530 5.530 6 C 0.188 3.812 7 C -0.506 4.506 8 H 0.062 0.938 9 C 0.057 3.943 10 N -0.897 5.897 11 Si 0.895 3.105 12 H -0.276 1.276 13 H -0.288 1.288 14 H -0.277 1.277 15 C 0.119 3.881 16 C -0.137 4.137 17 C -0.134 4.134 18 C -0.103 4.103 19 C -0.090 4.090 20 C -0.236 4.236 21 S 0.107 5.893 22 H 0.048 0.952 23 H 0.050 0.950 24 H 0.053 0.947 25 H 0.062 0.938 26 H 0.056 0.944 27 H 0.050 0.950 28 H 0.068 0.932 29 H 0.088 0.912 30 H 0.018 0.982 31 H 0.039 0.961 32 H -0.012 1.012 33 H 0.261 0.739 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.134 0.866 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.102 4.225 7.023 13.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.151 4.151 4 C -0.067 4.067 5 N -0.255 5.255 6 C 0.063 3.937 7 C -0.544 4.544 8 H 0.080 0.920 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.723 3.277 12 H -0.202 1.202 13 H -0.214 1.214 14 H -0.203 1.203 15 C -0.010 4.010 16 C -0.255 4.255 17 C -0.165 4.165 18 C -0.116 4.116 19 C -0.149 4.149 20 C -0.371 4.371 21 S 0.373 5.627 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.081 0.919 26 H 0.074 0.926 27 H 0.069 0.931 28 H 0.087 0.913 29 H 0.106 0.894 30 H 0.036 0.964 31 H 0.057 0.943 32 H 0.006 0.994 33 H 0.071 0.929 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.151 0.849 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -9.619 4.210 7.025 12.634 hybrid contribution -0.631 -0.424 -0.833 1.128 sum -10.251 3.786 6.192 12.560 Atomic orbital electron populations 1.21757 0.96396 1.00933 1.01556 1.21503 0.95235 0.97672 1.01833 1.21622 0.96202 0.95458 1.01799 1.22039 0.93672 0.90472 1.00501 1.62117 1.25833 1.13146 1.24361 1.19852 0.81108 0.97574 0.95141 1.21091 0.93224 1.41615 0.98518 0.91953 1.24963 0.95661 0.95756 0.98096 1.69945 0.98419 1.47788 1.37482 0.86605 0.76850 0.79413 0.84812 1.20202 1.21370 1.20310 1.20533 1.00551 0.87326 0.92640 1.24404 0.95321 0.99346 1.06459 1.19787 0.99965 0.92363 1.04373 1.18828 0.94644 0.94982 1.03184 1.20458 0.96446 0.96669 1.01313 1.25338 0.97098 1.02187 1.12523 1.84454 1.12465 0.98447 1.67360 0.93296 0.93136 0.92813 0.91906 0.92556 0.93127 0.91329 0.89369 0.96368 0.94274 0.99420 0.92918 0.94747 0.90290 0.84854 0.91518 0.91870 0.92160 0.82731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.91 37.16 0.37 -1.29 16 2 C -0.12 -1.64 5.93 -26.73 -0.16 -1.80 16 3 C -0.11 -1.74 5.26 -26.73 -0.14 -1.88 16 4 C 0.06 1.17 4.79 -3.83 -0.02 1.15 16 5 N -0.53 -11.40 4.35 -237.52 -1.03 -12.43 16 6 C 0.19 4.93 4.55 -4.98 -0.02 4.91 16 7 C -0.51 -14.29 8.23 -34.44 -0.28 -14.57 16 8 H 0.06 1.74 7.31 -52.49 -0.38 1.36 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -26.84 13.29 55.43 0.74 -26.11 16 11 Si 0.90 21.88 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 13 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 14 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 15 C 0.12 2.21 5.31 -4.98 -0.03 2.18 16 16 C -0.14 -2.50 5.46 -36.01 -0.20 -2.70 16 17 C -0.13 -2.24 9.85 -41.21 -0.41 -2.64 16 18 C -0.10 -1.58 5.80 -106.25 -0.62 -2.19 16 19 C -0.09 -1.04 10.14 36.01 0.36 -0.68 16 20 C -0.24 -3.67 10.98 29.04 0.32 -3.36 16 21 S 0.11 1.92 22.27 -107.50 -2.39 -0.48 16 22 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 23 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.05 0.72 6.89 -51.93 -0.36 0.37 16 28 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.09 1.88 6.58 -51.93 -0.34 1.54 16 30 H 0.02 0.33 8.00 -51.93 -0.42 -0.08 16 31 H 0.04 1.09 6.46 -51.93 -0.34 0.75 16 32 H -0.01 -0.34 8.12 -51.92 -0.42 -0.76 16 33 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 34 H 0.03 0.65 8.00 -51.93 -0.42 0.24 16 35 H 0.08 1.26 6.56 -51.92 -0.34 0.92 16 36 H 0.13 2.02 8.06 -52.49 -0.42 1.60 16 37 H 0.07 0.76 8.14 -51.92 -0.42 0.34 16 38 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 39 H 0.06 0.60 8.12 -51.93 -0.42 0.18 16 40 H 0.16 2.01 8.06 -52.48 -0.42 1.59 16 LS Contribution 338.02 15.07 5.09 5.09 Total: -1.00 -30.06 338.02 -10.33 -40.38 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: -6.80 Total: -1.98 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -0.91 Total: -21.34 kcal Atomic # 7 Polarization: -38.24 SS G_CDS: -0.30 Total: -38.54 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Atomic # 16 Polarization: 1.92 SS G_CDS: -2.39 Total: -0.48 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -30.06 -10.33 -40.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137157415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.119 kcal (2) G-P(sol) polarization free energy of solvation -30.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds