Wall clock time and date at job start Mon Mar 30 2020 00:25:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 109.47244 * 2 1 4 4 C 1.52995 * 109.47064 * 179.97438 * 3 2 1 5 5 N 1.46902 * 109.47135 * 174.86862 * 4 3 2 6 6 C 1.46899 * 110.99919 * 199.76144 * 5 4 3 7 7 C 1.50695 * 109.47118 * 66.04745 * 6 5 4 8 8 H 1.07996 * 120.00288 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99644 * 179.97438 * 7 6 5 10 10 N 1.31509 * 120.00332 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 119.99594 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.47246 * 60.00379 * 11 9 7 13 13 H 1.48502 * 109.47008 * 180.02562 * 11 9 7 14 14 H 1.48499 * 109.47332 * 300.00160 * 11 9 7 15 15 C 1.46900 * 110.99926 * 75.80922 * 5 4 3 16 16 C 1.50694 * 109.47448 * 199.67062 * 15 5 4 17 17 C 1.33386 * 125.20525 * 84.61378 * 16 15 5 18 18 C 1.38424 * 114.92041 * 179.79704 * 17 16 15 19 19 C 1.50700 * 122.54151 * 180.27662 * 18 17 16 20 20 C 1.33392 * 114.91946 * 0.43252 * 18 17 16 21 21 S 1.75876 * 109.59316 * 359.59363 * 20 18 17 22 22 H 1.09002 * 109.47158 * 180.02562 * 1 2 3 23 23 H 1.08999 * 109.46810 * 300.00306 * 1 2 3 24 24 H 1.09001 * 109.46609 * 59.99853 * 1 2 3 25 25 H 1.08999 * 109.46810 * 239.99694 * 2 1 3 26 26 H 1.09001 * 109.46609 * 120.00147 * 2 1 3 27 27 H 1.09005 * 109.46874 * 59.99760 * 3 2 1 28 28 H 1.08998 * 109.47001 * 300.00264 * 3 2 1 29 29 H 1.09005 * 109.46781 * 54.87268 * 4 3 2 30 30 H 1.08997 * 109.47395 * 294.86940 * 4 3 2 31 31 H 1.09001 * 109.46891 * 186.05019 * 6 5 4 32 32 H 1.09008 * 109.47172 * 306.04519 * 6 5 4 33 33 H 0.96994 * 120.00404 * 179.97438 * 10 9 7 34 34 H 1.08993 * 109.47394 * 79.66384 * 15 5 4 35 35 H 1.09008 * 109.46985 * 319.66881 * 15 5 4 36 36 H 1.07991 * 122.54274 * 0.02968 * 17 16 15 37 37 H 1.09007 * 109.47294 * 270.19441 * 19 18 17 38 38 H 1.08999 * 109.47328 * 30.19354 * 19 18 17 39 39 H 1.09004 * 109.47284 * 150.19200 * 19 18 17 40 40 H 1.08007 * 125.20091 * 179.85908 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4424 0.0006 5 7 4.0598 2.8218 -0.1232 6 6 5.4523 2.8461 -0.5904 7 6 5.5190 2.3141 -1.9988 8 1 4.6172 1.9908 -2.4972 9 6 6.7314 2.2412 -2.6514 10 7 7.8296 2.6354 -2.0447 11 14 6.8142 1.5812 -4.3969 12 1 5.9784 2.4272 -5.2862 13 1 8.2219 1.6058 -4.8692 14 1 6.3082 0.1853 -4.4229 15 6 3.9178 3.5469 1.1465 16 6 3.9596 5.0304 0.8852 17 6 2.9146 5.7778 0.5265 18 6 3.1932 7.1216 0.3458 19 6 2.1389 8.1215 -0.0537 20 6 4.4664 7.4639 0.5489 21 16 5.3939 6.0412 1.0058 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3632 0.5139 -0.8900 25 1 1.8933 -0.5139 -0.8900 26 1 1.8933 -0.5139 0.8900 27 1 1.6767 1.9563 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 3.9337 0.8509 -0.8397 30 1 3.9330 1.0104 0.9332 31 1 5.8243 3.8705 -0.5708 32 1 6.0654 2.2244 0.0623 33 1 8.6825 2.5838 -2.5037 34 1 4.7339 3.2725 1.8148 35 1 2.9659 3.2862 1.6093 36 1 1.9253 5.3664 0.3912 37 1 2.0904 8.1837 -1.1410 38 1 1.1714 7.8045 0.3355 39 1 2.3922 9.0997 0.3552 40 1 4.8656 8.4628 0.4521 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001137157415.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:41 Heat of formation + Delta-G solvation = -3.615409 kcal Electronic energy + Delta-G solvation = -18226.940690 eV Core-core repulsion = 15552.833105 eV Total energy + Delta-G solvation = -2674.107585 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.55199 -38.40240 -35.64225 -34.64430 -32.42545 -30.14008 -29.21493 -28.07021 -26.30484 -24.61634 -22.94348 -21.93748 -21.31413 -19.70995 -18.57891 -17.95430 -16.87033 -16.41440 -16.17666 -15.73955 -15.41003 -14.93895 -14.58716 -14.34054 -14.07275 -13.81838 -13.73663 -13.53670 -13.35030 -13.12313 -12.85754 -12.67508 -12.56339 -12.48581 -12.35243 -12.07290 -12.02422 -11.82022 -11.50605 -11.46865 -11.32829 -11.18225 -10.59962 -9.47821 -9.18121 -9.00747 -8.19180 -6.28408 0.17139 0.83109 1.23699 1.38584 1.41872 1.49538 1.88017 2.39733 3.13065 3.34479 3.88936 4.07280 4.17232 4.22918 4.31644 4.32806 4.46526 4.53637 4.59408 4.62001 4.82237 4.83824 4.85724 4.92304 5.01035 5.04315 5.14891 5.18300 5.21562 5.30680 5.35763 5.37834 5.51000 5.56521 5.59446 5.65836 5.76389 6.07301 6.35701 6.61086 6.86938 7.40032 8.91650 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.010355 B = 0.007569 C = 0.005008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2703.269092 B = 3698.340235 C = 5589.479605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C -0.099 4.099 4 C 0.061 3.939 5 N -0.534 5.534 6 C 0.205 3.795 7 C -0.521 4.521 8 H 0.061 0.939 9 C 0.003 3.997 10 N -0.932 5.932 11 Si 0.964 3.036 12 H -0.270 1.270 13 H -0.283 1.283 14 H -0.266 1.266 15 C 0.123 3.877 16 C -0.162 4.162 17 C -0.127 4.127 18 C -0.108 4.108 19 C -0.086 4.086 20 C -0.226 4.226 21 S 0.044 5.956 22 H 0.062 0.938 23 H 0.060 0.940 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.021 0.979 31 H 0.019 0.981 32 H -0.047 1.047 33 H 0.263 0.737 34 H 0.022 0.978 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.633 4.715 6.464 15.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.161 4.161 3 C -0.137 4.137 4 C -0.067 4.067 5 N -0.258 5.258 6 C 0.079 3.921 7 C -0.559 4.559 8 H 0.079 0.921 9 C -0.195 4.195 10 N -0.573 5.573 11 Si 0.789 3.211 12 H -0.195 1.195 13 H -0.208 1.208 14 H -0.191 1.191 15 C -0.006 4.006 16 C -0.280 4.280 17 C -0.158 4.158 18 C -0.121 4.121 19 C -0.145 4.145 20 C -0.362 4.362 21 S 0.309 5.691 22 H 0.081 0.919 23 H 0.079 0.921 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.039 0.961 31 H 0.037 0.963 32 H -0.030 1.030 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.127 0.873 36 H 0.170 0.830 37 H 0.089 0.911 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.179 4.695 6.477 14.571 hybrid contribution 0.124 -0.531 -0.606 0.815 sum -12.054 4.164 5.871 14.040 Atomic orbital electron populations 1.21715 0.94356 1.02060 1.02041 1.21486 0.96947 0.95858 1.01761 1.21508 0.92865 0.97276 1.02077 1.22084 0.96371 0.88849 0.99367 1.62086 1.22536 1.14756 1.26439 1.19473 0.83367 0.95315 0.93994 1.21399 0.93352 1.41655 0.99505 0.92105 1.25866 0.95202 0.95895 1.02533 1.70083 0.98997 1.48866 1.39342 0.85517 0.77081 0.79170 0.79360 1.19495 1.20813 1.19128 1.20565 1.01495 0.87538 0.91039 1.24407 0.95571 0.99174 1.08852 1.20145 1.00155 0.92986 1.02490 1.19270 0.95425 0.95219 1.02156 1.20537 0.95847 0.96471 1.01690 1.25648 0.96745 1.01986 1.11781 1.84651 1.14486 1.01093 1.68902 0.91914 0.92107 0.92870 0.92868 0.91876 0.91402 0.92314 0.92218 0.96060 0.96316 1.02988 0.92790 0.95998 0.87333 0.83049 0.91061 0.90214 0.90213 0.80134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.82 9.91 71.98 0.71 -2.11 16 2 C -0.12 -3.02 5.93 30.60 0.18 -2.83 16 3 C -0.10 -2.92 5.26 30.59 0.16 -2.76 16 4 C 0.06 2.36 4.79 86.30 0.41 2.77 16 5 N -0.53 -23.44 4.35 -905.38 -3.93 -27.37 16 6 C 0.20 11.22 4.55 85.56 0.39 11.61 16 7 C -0.52 -30.24 8.23 25.60 0.21 -30.03 16 8 H 0.06 3.47 7.31 -2.91 -0.02 3.45 16 9 C 0.00 0.18 5.46 84.66 0.46 0.64 16 10 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 11 Si 0.96 45.28 29.54 68.60 2.03 47.31 16 12 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 15 C 0.12 4.58 5.31 85.56 0.45 5.04 16 16 C -0.16 -5.94 5.46 24.59 0.13 -5.81 16 17 C -0.13 -4.01 9.85 21.22 0.21 -3.80 16 18 C -0.11 -3.06 5.80 -20.92 -0.12 -3.18 16 19 C -0.09 -1.70 10.14 71.24 0.72 -0.97 16 20 C -0.23 -6.77 10.98 66.72 0.73 -6.04 16 21 S 0.04 1.61 22.27 -56.49 -1.26 0.35 16 22 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 23 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 24 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 26 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.07 1.77 6.89 -2.38 -0.02 1.75 16 28 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.06 2.62 6.58 -2.38 -0.02 2.61 16 30 H 0.02 0.79 8.00 -2.39 -0.02 0.77 16 31 H 0.02 1.10 6.46 -2.39 -0.02 1.09 16 32 H -0.05 -2.87 8.12 -2.38 -0.02 -2.88 16 33 H 0.26 15.30 8.31 -92.71 -0.77 14.53 16 34 H 0.02 0.86 8.00 -2.39 -0.02 0.84 16 35 H 0.11 3.33 6.56 -2.38 -0.02 3.31 16 36 H 0.15 4.17 8.06 -2.92 -0.02 4.14 16 37 H 0.07 1.38 8.14 -2.38 -0.02 1.36 16 38 H 0.08 1.32 8.13 -2.39 -0.02 1.30 16 39 H 0.08 1.27 8.12 -2.39 -0.02 1.25 16 40 H 0.18 4.31 8.06 -2.91 -0.02 4.29 16 Total: -1.00 -66.62 338.02 2.77 -63.85 By element: Atomic # 1 Polarization: 9.51 SS G_CDS: 0.99 Total: 10.50 kcal Atomic # 6 Polarization: -42.13 SS G_CDS: 4.66 Total: -37.47 kcal Atomic # 7 Polarization: -80.89 SS G_CDS: -3.65 Total: -84.54 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -1.26 Total: 0.35 kcal Total: -66.62 2.77 -63.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001137157415.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.236 kcal (2) G-P(sol) polarization free energy of solvation -66.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds