Wall clock time and date at job start Mon Mar 30 2020 00:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47157 * 180.02562 * 18 17 16 20 20 N 1.33315 * 126.54553 * 269.69182 * 19 18 17 21 21 N 1.29000 * 107.34960 * 179.83504 * 20 19 18 22 22 N 1.28781 * 108.72814 * 0.43028 * 21 20 19 23 23 H 0.97002 * 125.44818 * 179.72745 * 22 21 20 24 24 N 1.28881 * 109.09953 * 359.72506 * 22 21 20 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.08999 * 109.47231 * 300.00286 * 18 17 16 37 37 H 1.09004 * 109.47104 * 60.00186 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7521 4.5662 3.8733 19 6 -3.1509 5.1146 3.7564 20 7 -3.4934 6.3331 3.3377 21 7 -4.7805 6.4071 3.3812 22 7 -5.2445 5.2880 3.8178 23 1 -6.1830 5.0811 3.9494 24 7 -4.2624 4.4869 4.0519 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3974 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -1.7139 3.8391 4.6845 37 1 -1.0584 5.3806 4.0825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138062779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:25 Heat of formation + Delta-G solvation = 62.607615 kcal Electronic energy + Delta-G solvation = -19868.468706 eV Core-core repulsion = 16683.232303 eV Total energy + Delta-G solvation = -3185.236402 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -44.67973 -39.25771 -35.95519 -35.06573 -34.24149 -32.72251 -32.37186 -31.37364 -28.51279 -26.96929 -24.76773 -23.58036 -22.30010 -21.58765 -20.26334 -19.48666 -19.36747 -17.76944 -17.27353 -16.25108 -15.82569 -15.37918 -14.97935 -14.21209 -14.09469 -13.62636 -13.18022 -13.01839 -12.72597 -12.50268 -12.32354 -12.21978 -11.89139 -11.55050 -11.49250 -11.48131 -11.25150 -10.90950 -10.73423 -10.66529 -10.47082 -10.40958 -9.87637 -9.56979 -9.14701 -8.99397 -8.33166 -8.04562 -6.57042 -4.21085 0.90937 1.88241 2.09060 3.30521 3.39533 3.45608 3.59695 3.63315 4.06597 4.09960 4.42574 4.88964 4.99308 5.01845 5.17499 5.30074 5.36024 5.49326 5.56750 5.58570 5.80108 6.08636 6.09621 6.11861 6.18426 6.28621 6.29979 6.71216 6.80643 6.98127 7.07032 7.38253 7.45165 7.68253 8.01021 8.24246 8.52131 8.72565 9.03774 9.48133 10.83541 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039005 B = 0.003464 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.691704 B = 8081.137328 C = 8222.094400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.041 0.959 5 C -0.616 4.616 6 H 0.061 0.939 7 C 0.038 3.962 8 N -0.900 5.900 9 Si 1.040 2.960 10 H -0.284 1.284 11 H -0.269 1.269 12 H -0.280 1.280 13 N -0.703 5.703 14 C 0.499 3.501 15 O -0.553 6.553 16 C -0.141 4.141 17 C -0.097 4.097 18 C -0.026 4.026 19 C 0.183 3.817 20 N -0.274 5.274 21 N -0.055 5.055 22 N -0.233 5.233 23 H 0.473 0.527 24 N -0.301 5.301 25 H 0.050 0.950 26 H 0.029 0.971 27 H 0.049 0.951 28 H 0.068 0.932 29 H 0.050 0.950 30 H 0.268 0.732 31 H 0.392 0.608 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.912 6.001 12.676 21.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.178 4.178 3 C 0.143 3.857 4 H 0.058 0.942 5 C -0.654 4.654 6 H 0.079 0.921 7 C -0.168 4.168 8 N -0.533 5.533 9 Si 0.868 3.132 10 H -0.210 1.210 11 H -0.195 1.195 12 H -0.206 1.206 13 N -0.351 5.351 14 C 0.285 3.715 15 O -0.432 6.432 16 C -0.181 4.181 17 C -0.136 4.136 18 C -0.066 4.066 19 C -0.100 4.100 20 N -0.148 5.148 21 N -0.051 5.051 22 N -0.079 5.079 23 H 0.327 0.673 24 N -0.153 5.153 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.068 0.932 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.079 0.921 31 H 0.225 0.775 32 H 0.108 0.892 33 H 0.110 0.890 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.114 0.886 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -17.772 5.901 10.289 21.366 hybrid contribution 0.012 0.068 2.235 2.236 sum -17.760 5.968 12.524 22.536 Atomic orbital electron populations 1.21880 0.97419 0.98758 1.01957 1.22356 0.93765 0.99884 1.01765 1.19022 0.95696 0.88520 0.82497 0.94167 1.22109 0.89815 1.49404 1.04084 0.92084 1.25676 0.97538 0.92380 1.01211 1.70874 1.07090 1.41012 1.34304 0.84112 0.75472 0.77720 0.75875 1.20963 1.19526 1.20627 1.46261 1.14748 1.56082 1.18005 1.20445 0.82549 0.79181 0.89353 1.90662 1.50947 1.60041 1.41554 1.21645 0.97796 1.01447 0.97239 1.21263 0.95860 1.00846 0.95615 1.20099 0.85216 1.01008 1.00322 1.25777 0.97026 0.88554 0.98651 1.75912 1.02080 1.18556 1.18209 1.78953 1.05228 1.07671 1.13215 1.47793 1.11652 1.07267 1.41169 0.67332 1.74730 0.95990 1.21902 1.22635 0.93093 0.95197 0.93244 0.91398 0.93139 0.92136 0.77486 0.89173 0.88974 0.90478 0.90770 0.88644 0.88218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.88 8.53 37.15 0.32 -2.56 16 2 C -0.14 -3.09 5.28 -26.73 -0.14 -3.23 16 3 C 0.25 5.81 1.82 -69.08 -0.13 5.69 16 4 H 0.04 1.05 6.26 -51.93 -0.32 0.72 16 5 C -0.62 -16.53 9.01 -34.44 -0.31 -16.84 16 6 H 0.06 1.71 7.96 -52.48 -0.42 1.29 16 7 C 0.04 1.08 5.32 -17.82 -0.09 0.98 16 8 N -0.90 -26.76 13.69 55.43 0.76 -26.00 16 9 Si 1.04 25.18 26.27 -169.99 -4.47 20.71 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.09 5.67 56.52 0.32 -5.77 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 N -0.70 -13.63 5.03 -54.94 -0.28 -13.90 16 14 C 0.50 8.88 6.42 -10.99 -0.07 8.81 16 15 O -0.55 -11.77 13.12 5.56 0.07 -11.70 16 16 C -0.14 -1.67 5.70 -27.88 -0.16 -1.83 16 17 C -0.10 -1.13 4.49 -26.73 -0.12 -1.25 16 18 C -0.03 -0.24 5.84 -27.89 -0.16 -0.40 16 19 C 0.18 2.04 7.62 -156.63 -1.19 0.84 16 20 N -0.27 -3.45 12.50 32.44 0.41 -3.04 16 21 N -0.06 -0.60 13.48 60.35 0.81 0.21 16 22 N -0.23 -1.88 7.91 60.34 0.48 -1.40 16 23 H 0.47 1.51 8.96 -340.52 -3.05 -1.55 16 24 N -0.30 -3.09 12.36 32.46 0.40 -2.69 16 25 H 0.05 1.08 7.88 -51.93 -0.41 0.67 16 26 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.97 5.63 -51.92 -0.29 0.68 16 28 H 0.07 1.59 4.74 -51.92 -0.25 1.34 16 29 H 0.05 1.09 8.14 -51.93 -0.42 0.66 16 30 H 0.27 7.89 8.73 -40.82 -0.36 7.53 16 31 H 0.39 6.70 8.53 -40.82 -0.35 6.35 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.08 1.06 8.10 -51.93 -0.42 0.63 16 35 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 36 H 0.10 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 308.00 15.07 4.64 4.64 Total: -1.00 -33.98 308.00 -6.93 -40.91 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.70 Total: 2.05 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.06 Total: -9.80 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: 2.58 Total: -46.82 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: 0.07 Total: -11.70 kcal Atomic # 14 Polarization: 25.18 SS G_CDS: -4.47 Total: 20.71 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -33.98 -6.93 -40.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138062779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.517 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds