Wall clock time and date at job start Mon Mar 30 2020 00:28:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47275 * 2 1 4 4 H 1.08998 * 109.46845 * 305.55830 * 3 2 1 5 5 C 1.50694 * 109.47214 * 185.55739 * 3 2 1 6 6 H 1.08004 * 119.99742 * 245.60300 * 5 3 2 7 7 C 1.37879 * 120.00562 * 65.60651 * 5 3 2 8 8 N 1.31505 * 120.00295 * 196.28743 * 7 5 3 9 9 Si 1.86803 * 119.99620 * 16.28391 * 7 5 3 10 10 H 1.48499 * 109.46999 * 180.02562 * 9 7 5 11 11 H 1.48506 * 109.47178 * 300.00153 * 9 7 5 12 12 H 1.48500 * 109.47146 * 59.99948 * 9 7 5 13 13 N 1.46499 * 109.46998 * 65.55420 * 3 2 1 14 14 C 1.34774 * 120.00201 * 275.00234 * 13 3 2 15 15 O 1.21279 * 120.00154 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00213 * 179.97438 * 14 13 3 17 17 C 1.53004 * 109.47380 * 179.97438 * 16 14 13 18 18 C 1.52995 * 109.47165 * 180.02562 * 17 16 14 19 19 C 1.50700 * 109.47157 * 180.02562 * 18 17 16 20 20 N 1.33315 * 126.54553 * 269.69182 * 19 18 17 21 21 N 1.29000 * 107.34960 * 179.83504 * 20 19 18 22 22 N 1.28781 * 108.72814 * 0.43028 * 21 20 19 23 23 H 0.97002 * 125.44818 * 179.72745 * 22 21 20 24 24 N 1.28881 * 109.09953 * 359.72506 * 22 21 20 25 25 H 1.09000 * 109.47548 * 59.99665 * 1 2 3 26 26 H 1.09001 * 109.47148 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47032 * 299.99427 * 1 2 3 28 28 H 1.09008 * 109.47032 * 240.00572 * 2 1 3 29 29 H 1.09000 * 109.47548 * 120.00335 * 2 1 3 30 30 H 0.96998 * 120.00193 * 354.82844 * 8 7 5 31 31 H 0.97002 * 119.99591 * 94.99944 * 13 3 2 32 32 H 1.08999 * 109.47228 * 300.00351 * 16 14 13 33 33 H 1.09004 * 109.46893 * 60.00119 * 16 14 13 34 34 H 1.08999 * 109.47279 * 300.00383 * 17 16 14 35 35 H 1.08998 * 109.46537 * 60.00164 * 17 16 14 36 36 H 1.08999 * 109.47231 * 300.00286 * 18 17 16 37 37 H 1.09004 * 109.47104 * 60.00186 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5977 1.9842 -0.8360 5 6 3.5406 1.4447 -0.1376 6 1 4.1567 1.8042 0.6734 7 6 4.1272 0.9880 -1.2988 8 7 5.4071 0.6861 -1.3143 9 14 3.1039 0.7979 -2.8499 10 1 3.9631 0.2936 -3.9511 11 1 2.0022 -0.1664 -2.6011 12 1 2.5325 2.1147 -3.2305 13 7 1.6639 2.0934 1.2574 14 6 0.4477 2.6599 1.3855 15 8 -0.3356 2.6305 0.4601 16 6 0.0606 3.3290 2.6792 17 6 -1.3593 3.8864 2.5602 18 6 -1.7521 4.5662 3.8733 19 6 -3.1509 5.1146 3.7564 20 7 -3.4934 6.3331 3.3377 21 7 -4.7805 6.4071 3.3812 22 7 -5.2445 5.2880 3.8178 23 1 -6.1830 5.0811 3.9494 24 7 -4.2624 4.4869 4.0519 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 1.8933 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 5.9548 0.8552 -0.5318 31 1 2.2902 2.1166 1.9978 32 1 0.0991 2.6017 3.4901 33 1 0.7539 4.1436 2.8885 34 1 -1.3974 4.6138 1.7493 35 1 -2.0528 3.0720 2.3506 36 1 -1.7139 3.8391 4.6845 37 1 -1.0584 5.3806 4.0825 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138062779.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:28:24 Heat of formation + Delta-G solvation = 36.273350 kcal Electronic energy + Delta-G solvation = -19869.610645 eV Core-core repulsion = 16683.232303 eV Total energy + Delta-G solvation = -3186.378341 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -45.45191 -40.74131 -37.28725 -36.33308 -35.06294 -34.42219 -33.69147 -32.91634 -29.72268 -28.57476 -25.56455 -24.74916 -24.03283 -22.56326 -21.74203 -21.08193 -20.12506 -19.70794 -18.05839 -17.70221 -17.21916 -16.74507 -16.08790 -15.48588 -15.33680 -15.01763 -14.58525 -14.52569 -14.39265 -14.05909 -13.65234 -13.41690 -13.20298 -12.73942 -12.64404 -12.45200 -12.42640 -12.29666 -12.27432 -12.07409 -11.77212 -11.61434 -11.37430 -11.25433 -11.08025 -10.58834 -10.46583 -9.71303 -8.77397 -6.42402 0.14216 1.05903 1.44927 1.49791 1.53163 1.68908 1.92168 2.41370 2.59812 2.97414 3.02538 3.34482 3.89944 4.08914 4.15284 4.34464 4.37249 4.43184 4.54454 4.58098 4.70117 4.74284 4.77614 4.89854 4.96311 5.12125 5.22505 5.26095 5.33975 5.37923 5.57841 5.66435 5.72995 5.75813 6.03837 6.56466 6.97703 7.22370 7.31582 7.59007 8.61805 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.039005 B = 0.003464 C = 0.003405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.691704 B = 8081.137328 C = 8222.094400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.136 4.136 3 C 0.250 3.750 4 H 0.017 0.983 5 C -0.611 4.611 6 H 0.042 0.958 7 C -0.006 4.006 8 N -0.931 5.931 9 Si 1.070 2.930 10 H -0.283 1.283 11 H -0.245 1.245 12 H -0.277 1.277 13 N -0.706 5.706 14 C 0.494 3.506 15 O -0.590 6.590 16 C -0.127 4.127 17 C -0.088 4.088 18 C -0.019 4.019 19 C 0.172 3.828 20 N -0.306 5.306 21 N -0.067 5.067 22 N -0.208 5.208 23 H 0.491 0.509 24 N -0.306 5.306 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.056 0.944 30 H 0.258 0.742 31 H 0.404 0.596 32 H 0.125 0.875 33 H 0.118 0.882 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.121 0.879 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.562 5.828 14.259 24.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.174 4.174 3 C 0.145 3.855 4 H 0.035 0.965 5 C -0.649 4.649 6 H 0.060 0.940 7 C -0.207 4.207 8 N -0.566 5.566 9 Si 0.893 3.107 10 H -0.209 1.209 11 H -0.170 1.170 12 H -0.202 1.202 13 N -0.355 5.355 14 C 0.282 3.718 15 O -0.471 6.471 16 C -0.167 4.167 17 C -0.128 4.128 18 C -0.059 4.059 19 C -0.111 4.111 20 N -0.179 5.179 21 N -0.062 5.062 22 N -0.059 5.059 23 H 0.349 0.651 24 N -0.159 5.159 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.239 0.761 32 H 0.143 0.857 33 H 0.137 0.863 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.140 0.860 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.450 5.743 11.916 23.522 hybrid contribution 0.463 0.160 1.809 1.874 sum -18.987 5.903 13.725 24.160 Atomic orbital electron populations 1.21756 0.95574 1.00192 1.01423 1.22241 0.95308 0.98484 1.01408 1.18689 0.93220 0.89662 0.83959 0.96484 1.22325 0.91718 1.47733 1.03097 0.94022 1.26755 0.97709 0.92270 1.03946 1.70971 1.08069 1.43511 1.34068 0.83726 0.75160 0.78490 0.73299 1.20900 1.16973 1.20248 1.46128 1.15997 1.56475 1.16931 1.21466 0.81190 0.78142 0.90980 1.90650 1.51816 1.61172 1.43501 1.21655 0.98083 1.02531 0.94428 1.21120 0.95491 0.99744 0.96410 1.20142 0.84506 1.01960 0.99289 1.26157 0.98003 0.88302 0.98597 1.75891 1.02808 1.19711 1.19469 1.78890 1.05002 1.08508 1.13824 1.47855 1.12442 1.06270 1.39291 0.65088 1.74704 0.96209 1.22149 1.22818 0.94565 0.92702 0.92864 0.92700 0.92553 0.93238 0.76108 0.85665 0.86340 0.93107 0.92439 0.86043 0.86489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.07 8.53 71.98 0.61 -4.45 16 2 C -0.14 -5.84 5.28 30.59 0.16 -5.68 16 3 C 0.25 11.64 1.82 44.24 0.08 11.72 16 4 H 0.02 0.89 6.26 -2.39 -0.01 0.88 16 5 C -0.61 -32.94 9.01 25.60 0.23 -32.71 16 6 H 0.04 2.36 7.96 -2.91 -0.02 2.33 16 7 C -0.01 -0.35 5.32 84.66 0.45 0.10 16 8 N -0.93 -56.30 13.69 21.45 0.29 -56.00 16 9 Si 1.07 50.78 26.27 68.60 1.80 52.58 16 10 H -0.28 -13.33 7.11 99.48 0.71 -12.63 16 11 H -0.25 -10.61 5.67 99.48 0.56 -10.05 16 12 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 13 N -0.71 -26.35 5.03 -446.11 -2.24 -28.59 16 14 C 0.49 16.68 6.42 87.66 0.56 17.25 16 15 O -0.59 -24.66 13.12 -3.03 -0.04 -24.70 16 16 C -0.13 -2.60 5.70 29.85 0.17 -2.43 16 17 C -0.09 -1.88 4.49 30.59 0.14 -1.74 16 18 C -0.02 -0.29 5.84 29.85 0.17 -0.11 16 19 C 0.17 3.51 7.62 138.55 1.06 4.57 16 20 N -0.31 -7.35 12.50 -51.27 -0.64 -7.99 16 21 N -0.07 -1.38 13.48 37.02 0.50 -0.88 16 22 N -0.21 -2.99 7.91 37.00 0.29 -2.70 16 23 H 0.49 2.18 8.96 -347.67 -3.12 -0.94 16 24 N -0.31 -5.66 12.36 -51.20 -0.63 -6.30 16 25 H 0.04 1.48 7.88 -2.39 -0.02 1.46 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.05 1.98 5.63 -2.38 -0.01 1.97 16 28 H 0.05 2.49 4.74 -2.38 -0.01 2.48 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.26 15.59 8.73 -92.71 -0.81 14.78 16 31 H 0.40 13.07 8.53 -92.71 -0.79 12.28 16 32 H 0.13 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 1.35 8.10 -2.39 -0.02 1.33 16 35 H 0.06 1.41 8.10 -2.39 -0.02 1.39 16 36 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -74.64 308.00 -0.01 -74.65 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -2.98 Total: 13.41 kcal Atomic # 6 Polarization: -17.12 SS G_CDS: 3.64 Total: -13.49 kcal Atomic # 7 Polarization: -100.03 SS G_CDS: -2.43 Total: -102.46 kcal Atomic # 8 Polarization: -24.66 SS G_CDS: -0.04 Total: -24.70 kcal Atomic # 14 Polarization: 50.78 SS G_CDS: 1.80 Total: 52.58 kcal Total: -74.64 -0.01 -74.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138062779.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.919 kcal (2) G-P(sol) polarization free energy of solvation -74.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.646 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds