Wall clock time and date at job start Mon Mar 30 2020 01:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99768 * 2 1 4 4 H 1.48500 * 109.47332 * 270.00114 * 3 2 1 5 5 H 1.48498 * 109.47049 * 30.00388 * 3 2 1 6 6 H 1.48498 * 109.46982 * 150.00287 * 3 2 1 7 7 C 1.37883 * 120.00241 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99463 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00088 * 0.02562 * 7 2 1 10 10 C 1.53043 * 109.45958 * 180.02562 * 9 7 2 11 11 C 1.53191 * 109.30806 * 181.37106 * 10 9 7 12 12 N 1.46923 * 108.77898 * 305.35793 * 11 10 9 13 13 C 1.34770 * 120.63663 * 233.58984 * 12 11 10 14 14 O 1.21280 * 119.99987 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00402 * 179.97438 * 13 12 11 16 16 H 1.09000 * 109.47223 * 305.00260 * 15 13 12 17 17 O 1.42895 * 109.47186 * 184.99954 * 15 13 12 18 18 C 1.53003 * 109.46728 * 65.00062 * 15 13 12 19 19 C 1.53786 * 113.61503 * 85.86370 * 18 15 13 20 20 C 1.54049 * 86.98426 * 140.01654 * 19 18 15 21 21 C 1.53781 * 113.61337 * 183.47164 * 18 15 13 22 22 C 1.46930 * 118.73383 * 53.86659 * 12 11 10 23 23 C 1.53042 * 109.44560 * 300.05971 * 9 7 2 24 24 H 0.96997 * 120.00447 * 359.97438 * 1 2 3 25 25 H 1.08999 * 109.46149 * 60.02131 * 9 7 2 26 26 H 1.08997 * 109.50059 * 61.41797 * 10 9 7 27 27 H 1.09002 * 109.51900 * 301.33197 * 10 9 7 28 28 H 1.09004 * 109.58053 * 185.57532 * 11 10 9 29 29 H 1.08999 * 109.70567 * 65.22558 * 11 10 9 30 30 H 0.96701 * 114.00578 * 300.00218 * 17 15 13 31 31 H 1.09002 * 112.85017 * 314.66753 * 18 15 13 32 32 H 1.08992 * 113.61675 * 254.61398 * 19 18 15 33 33 H 1.09000 * 113.60973 * 25.51686 * 19 18 15 34 34 H 1.09005 * 113.62125 * 220.02158 * 20 19 18 35 35 H 1.08996 * 113.68970 * 89.12734 * 20 19 18 36 36 H 1.08999 * 113.61567 * 334.48261 * 21 18 15 37 37 H 1.08998 * 113.61196 * 105.38615 * 21 18 15 38 38 H 1.09000 * 109.59203 * 65.92582 * 22 12 11 39 39 H 1.09003 * 109.58693 * 186.35794 * 22 12 11 40 40 H 1.09003 * 109.50338 * 298.57306 * 23 9 7 41 41 H 1.09001 * 109.50044 * 58.67070 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4992 -0.0017 10 6 2.2460 -3.6622 -0.0015 11 6 1.4769 -4.9866 -0.0372 12 7 0.5220 -5.0093 1.0791 13 6 0.5106 -6.0357 1.9523 14 8 1.2940 -6.9523 1.8211 15 6 -0.4747 -6.0442 3.0926 16 1 -0.3724 -5.1241 3.6680 17 8 -0.2149 -7.1663 3.9383 18 6 -1.8968 -6.1428 2.5369 19 6 -2.3567 -7.5865 2.2736 20 6 -3.7300 -7.1640 2.8291 21 6 -2.9872 -6.0737 3.6191 22 6 -0.4245 -3.8946 1.2217 23 6 0.3699 -2.5799 1.2469 24 1 -0.4851 0.8400 0.0004 25 1 0.6252 -2.5563 -0.8922 26 1 2.8553 -3.6195 0.9013 27 1 2.8894 -3.5913 -0.8785 28 1 2.1755 -5.8174 0.0625 29 1 0.9383 -5.0734 -0.9808 30 1 -0.2881 -8.0208 3.4917 31 1 -2.0711 -5.4691 1.6979 32 1 -2.3747 -7.8531 1.2170 33 1 -1.8456 -8.3266 2.8893 34 1 -4.1968 -7.9197 3.4609 35 1 -4.4065 -6.7696 2.0709 36 1 -2.6483 -6.4010 4.6020 37 1 -3.5140 -5.1198 3.6479 38 1 -1.1154 -3.8915 0.3787 39 1 -0.9810 -4.0046 2.1525 40 1 0.9972 -2.5476 2.1378 41 1 -0.3227 -1.7382 1.2585 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138163273.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:24 Heat of formation + Delta-G solvation = -92.189099 kcal Electronic energy + Delta-G solvation = -21503.810271 eV Core-core repulsion = 18383.108972 eV Total energy + Delta-G solvation = -3120.701299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.76593 -39.75400 -38.45156 -36.55736 -35.36971 -33.28027 -31.85197 -29.92563 -27.92111 -26.54896 -25.36013 -24.11221 -23.82538 -21.59774 -20.38510 -20.02281 -18.74463 -18.25539 -17.91579 -17.28777 -16.55384 -16.34292 -16.17696 -15.24837 -15.02460 -14.88965 -14.58082 -14.44792 -14.15039 -13.88967 -13.43885 -13.28748 -13.08464 -12.94814 -12.82050 -12.75565 -12.45217 -12.19055 -12.11560 -11.95508 -11.58539 -11.45825 -11.35923 -11.12464 -11.01990 -10.86501 -10.43725 -10.29450 -9.59159 -8.08433 -6.21201 1.41143 1.43724 1.50317 1.52296 2.00635 2.44085 3.18279 3.23581 3.35412 3.64451 3.65512 3.87085 3.99341 4.10809 4.22598 4.24130 4.31323 4.45328 4.48872 4.54654 4.66783 4.79912 4.83805 4.87745 4.92105 4.95562 5.08567 5.14616 5.16842 5.22349 5.31336 5.41107 5.51548 5.59292 5.64206 5.98034 6.12374 6.37094 6.39762 6.56375 6.87623 7.08033 7.46543 8.95019 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.027922 B = 0.004959 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.549947 B = 5644.758905 C = 6199.562096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.537 4.537 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.114 4.114 11 C 0.115 3.885 12 N -0.597 5.597 13 C 0.482 3.518 14 O -0.585 6.585 15 C 0.109 3.891 16 H 0.129 0.871 17 O -0.544 6.544 18 C -0.151 4.151 19 C -0.143 4.143 20 C -0.130 4.130 21 C -0.125 4.125 22 C 0.111 3.889 23 C -0.118 4.118 24 H 0.262 0.738 25 H 0.006 0.994 26 H 0.039 0.961 27 H 0.063 0.937 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.386 0.614 31 H 0.107 0.893 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.027 0.973 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.409 -11.623 4.967 15.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.200 1.200 7 C -0.575 4.575 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.152 4.152 11 C -0.007 4.007 12 N -0.330 5.330 13 C 0.271 3.729 14 O -0.467 6.467 15 C 0.046 3.954 16 H 0.146 0.854 17 O -0.352 6.352 18 C -0.170 4.170 19 C -0.180 4.180 20 C -0.167 4.167 21 C -0.162 4.162 22 C -0.011 4.011 23 C -0.156 4.156 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.058 0.942 27 H 0.082 0.918 28 H 0.096 0.904 29 H 0.091 0.909 30 H 0.237 0.763 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.098 0.902 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.119 0.881 40 H 0.046 0.954 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -8.069 -11.520 5.343 15.046 hybrid contribution 0.776 0.886 -0.722 1.382 sum -7.293 -10.634 4.621 13.698 Atomic orbital electron populations 1.69921 1.06701 1.27178 1.51134 1.25586 0.95690 1.01775 0.94788 0.85734 0.78754 0.80092 0.78111 1.20334 1.20681 1.19993 1.21539 0.92858 0.92336 1.50743 0.93671 1.18605 0.93025 0.91773 0.93874 1.21855 0.98372 0.94443 1.00524 1.21597 0.92051 0.98144 0.88951 1.48303 1.35525 1.21332 1.27795 1.22110 0.85254 0.81440 0.84082 1.90621 1.42968 1.37627 1.75457 1.21723 0.92264 0.91903 0.89471 0.85383 1.86557 1.93254 1.17013 1.38346 1.23474 0.92158 1.00288 1.01030 1.23036 0.98034 0.95373 1.01547 1.22770 0.95521 0.98637 0.99780 1.22901 0.95529 1.00278 0.97524 1.22180 0.90944 0.85204 1.02740 1.21906 0.99415 0.96278 0.98022 0.92845 0.97583 0.94244 0.91817 0.90442 0.90869 0.76288 0.87499 0.91652 0.89210 0.90213 0.89509 0.89390 0.90348 0.90862 0.88097 0.95381 0.89918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.17 11.30 21.45 0.24 -48.92 16 2 C 0.02 1.10 5.30 84.66 0.45 1.55 16 3 Si 0.95 42.36 29.54 68.60 2.03 44.39 16 4 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 5 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 6 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 7 C -0.54 -28.67 8.56 25.60 0.22 -28.45 16 8 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 9 C 0.05 2.16 2.06 -11.51 -0.02 2.14 16 10 C -0.11 -4.66 5.30 30.67 0.16 -4.49 16 11 C 0.12 4.10 6.43 86.36 0.56 4.66 16 12 N -0.60 -20.22 2.97 -818.05 -2.43 -22.65 16 13 C 0.48 16.03 7.11 87.66 0.62 16.65 16 14 O -0.59 -23.06 15.74 15.96 0.25 -22.81 16 15 C 0.11 2.82 2.60 29.85 0.08 2.89 16 16 H 0.13 3.24 7.45 -2.39 -0.02 3.23 16 17 O -0.54 -14.20 12.33 -129.99 -1.60 -15.80 16 18 C -0.15 -3.07 2.79 -10.26 -0.03 -3.10 16 19 C -0.14 -2.54 7.38 31.21 0.23 -2.31 16 20 C -0.13 -1.92 8.09 31.21 0.25 -1.67 16 21 C -0.12 -2.09 7.56 31.12 0.24 -1.86 16 22 C 0.11 3.62 4.89 86.51 0.42 4.05 16 23 C -0.12 -5.03 5.17 30.82 0.16 -4.88 16 24 H 0.26 13.52 8.31 -92.71 -0.77 12.75 16 25 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 26 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 28 H 0.08 2.79 7.01 -2.39 -0.02 2.78 16 29 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.39 8.59 6.58 -74.06 -0.49 8.10 16 31 H 0.11 2.26 5.91 -2.39 -0.01 2.25 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.50 5.87 -2.39 -0.01 1.48 16 34 H 0.08 1.01 8.14 -2.38 -0.02 0.99 16 35 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 36 H 0.09 1.52 7.90 -2.39 -0.02 1.50 16 37 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.07 2.31 8.13 -2.39 -0.02 2.29 16 39 H 0.10 2.69 4.88 -2.39 -0.01 2.68 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.08 3.95 6.03 -2.39 -0.01 3.94 16 Total: -1.00 -61.52 315.51 2.36 -59.16 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.54 Total: 21.46 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 3.33 Total: -14.82 kcal Atomic # 7 Polarization: -69.39 SS G_CDS: -2.18 Total: -71.58 kcal Atomic # 8 Polarization: -37.26 SS G_CDS: -1.35 Total: -38.61 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Total: -61.52 2.36 -59.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138163273.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.034 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.189 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds