Wall clock time and date at job start Mon Mar 30 2020 01:08:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48502 * 109.46888 * 239.99728 * 3 2 1 5 5 H 1.48497 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46981 * 120.00161 * 3 2 1 7 7 C 1.37879 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53072 * 109.44922 * 59.79209 * 9 7 2 11 11 C 1.53189 * 109.29158 * 181.24324 * 10 9 7 12 12 N 1.46928 * 108.89422 * 305.57863 * 11 10 9 13 13 C 1.34779 * 120.62641 * 233.51737 * 12 11 10 14 14 O 1.21288 * 119.99430 * 175.34454 * 13 12 11 15 15 C 1.50701 * 120.00523 * 355.34444 * 13 12 11 16 16 H 1.09002 * 109.46367 * 52.82051 * 15 13 12 17 17 O 1.42893 * 109.47172 * 172.81697 * 15 13 12 18 18 C 1.52996 * 109.47006 * 292.81989 * 15 13 12 19 19 C 1.53774 * 113.61476 * 279.56303 * 18 15 13 20 20 C 1.53782 * 87.08187 * 220.01802 * 19 18 15 21 21 C 1.53778 * 87.07959 * 25.43262 * 20 19 18 22 22 C 1.46924 * 118.74051 * 53.53606 * 12 11 10 23 23 C 1.53038 * 109.45837 * 180.02562 * 9 7 2 24 24 H 0.97009 * 119.99687 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.44690 * 299.96523 * 9 7 2 26 26 H 1.08999 * 109.39382 * 61.36835 * 10 9 7 27 27 H 1.09004 * 109.62296 * 301.25307 * 10 9 7 28 28 H 1.09005 * 109.58970 * 185.71690 * 11 10 9 29 29 H 1.09002 * 109.59028 * 65.43571 * 11 10 9 30 30 H 0.96699 * 113.99874 * 59.99927 * 17 15 13 31 31 H 1.09005 * 112.85089 * 50.87346 * 18 15 13 32 32 H 1.08999 * 113.61634 * 334.56927 * 19 18 15 33 33 H 1.08998 * 113.61677 * 105.47055 * 19 18 15 34 34 H 1.08994 * 113.61398 * 270.88612 * 20 19 18 35 35 H 1.09006 * 113.61337 * 139.97862 * 20 19 18 36 36 H 1.08998 * 113.61480 * 220.01436 * 21 20 19 37 37 H 1.09003 * 113.69122 * 89.12423 * 21 20 19 38 38 H 1.08998 * 109.58431 * 66.17880 * 22 12 11 39 39 H 1.08995 * 109.58453 * 186.46799 * 22 12 11 40 40 H 1.09002 * 109.50484 * 58.66004 * 23 9 7 41 41 H 1.09000 * 109.52215 * 298.58126 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 0.3666 -2.5772 -1.2476 11 6 -0.4210 -3.8910 -1.2282 12 7 0.5216 -5.0086 -1.0827 13 6 0.5102 -6.0347 -1.9565 14 8 1.3472 -6.9088 -1.8762 15 6 -0.5423 -6.0959 -3.0333 16 1 -0.5510 -5.1567 -3.5865 17 8 -0.2482 -7.1720 -3.9263 18 6 -1.9134 -6.3240 -2.3939 19 6 -2.1842 -7.7918 -2.0242 20 6 -3.6216 -7.5705 -2.5238 21 6 -3.0558 -6.4524 -3.4152 22 6 1.4764 -4.9867 0.0338 23 6 2.2455 -3.6623 -0.0005 24 1 -0.4850 0.8402 -0.0004 25 1 0.6251 -2.5570 0.8901 26 1 0.9934 -2.5419 -2.1386 27 1 -0.3278 -1.7370 -1.2571 28 1 -0.9746 -3.9990 -2.1610 29 1 -1.1165 -3.8879 -0.3889 30 1 -0.2239 -8.0402 -3.5013 31 1 -2.1260 -5.6226 -1.5869 32 1 -1.6184 -8.5047 -2.6240 33 1 -2.1197 -7.9918 -0.9547 34 1 -4.3018 -7.2111 -1.7517 35 1 -4.0239 -8.4144 -3.0844 36 1 -3.6949 -5.5711 -3.4688 37 1 -2.7280 -6.7977 -4.3958 38 1 0.9373 -5.0713 0.9773 39 1 2.1732 -5.8190 -0.0649 40 1 2.8882 -3.5915 0.8770 41 1 2.8557 -3.6197 -0.9027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138163274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:39 Heat of formation + Delta-G solvation = -77.202377 kcal Electronic energy + Delta-G solvation = -21476.950114 eV Core-core repulsion = 18356.898688 eV Total energy + Delta-G solvation = -3120.051426 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 7.98 seconds Orbital eigenvalues (eV) -40.53801 -38.64068 -36.94752 -35.45790 -33.59150 -31.56049 -30.24388 -28.74568 -26.21200 -25.76590 -24.04308 -22.69908 -22.27736 -20.06902 -19.42161 -18.64896 -17.33982 -16.91635 -16.21189 -16.18250 -15.22863 -14.98559 -14.58481 -13.96375 -13.74522 -13.38475 -13.14332 -12.86585 -12.75504 -12.56410 -12.31532 -12.10917 -11.70034 -11.68731 -11.35728 -11.23750 -10.95407 -10.69864 -10.62226 -10.57206 -10.42026 -10.25636 -10.11853 -9.67436 -9.21840 -9.17599 -8.93404 -8.41308 -8.06003 -6.06701 -4.12735 2.85207 3.27998 3.32678 3.35823 3.37203 4.28494 4.38234 4.39033 4.50190 4.56355 4.69528 4.89206 5.14870 5.22817 5.42740 5.51922 5.56078 5.63139 5.64274 5.75334 5.77838 5.84914 5.90812 6.00758 6.08494 6.11244 6.22779 6.35010 6.40221 6.60974 6.84681 6.98661 7.09353 7.21754 7.49868 7.62079 7.86194 7.87263 7.99386 8.36383 8.46074 8.90353 9.52593 10.98859 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.004842 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.924478 B = 5781.025952 C = 6266.865859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.062 3.938 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.513 4.513 8 H 0.054 0.946 9 C 0.049 3.951 10 C -0.125 4.125 11 C 0.101 3.899 12 N -0.595 5.595 13 C 0.485 3.515 14 O -0.555 6.555 15 C 0.101 3.899 16 H 0.125 0.875 17 O -0.538 6.538 18 C -0.144 4.144 19 C -0.140 4.140 20 C -0.139 4.139 21 C -0.130 4.130 22 C 0.110 3.890 23 C -0.123 4.123 24 H 0.261 0.739 25 H 0.027 0.973 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.377 0.623 31 H 0.108 0.892 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.089 0.911 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.060 0.940 41 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.341 -11.675 -3.956 14.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.139 4.139 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.551 4.551 8 H 0.073 0.927 9 C 0.031 3.969 10 C -0.164 4.164 11 C -0.021 4.021 12 N -0.328 5.328 13 C 0.273 3.727 14 O -0.434 6.434 15 C 0.039 3.961 16 H 0.142 0.858 17 O -0.344 6.344 18 C -0.163 4.163 19 C -0.177 4.177 20 C -0.176 4.176 21 C -0.167 4.167 22 C -0.012 4.012 23 C -0.161 4.161 24 H 0.071 0.929 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.124 0.876 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.227 0.773 31 H 0.126 0.874 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.079 0.921 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.037 -11.526 -4.341 14.185 hybrid contribution 0.467 0.733 0.510 1.007 sum -6.570 -10.793 -3.832 13.204 Atomic orbital electron populations 1.69818 1.05854 1.26612 1.50874 1.24948 0.94878 0.99051 0.95002 0.86669 0.79645 0.83115 0.78653 1.20310 1.21282 1.20300 1.21171 0.92947 0.90567 1.50423 0.92740 1.18629 0.92618 0.91757 0.93934 1.22053 1.00130 0.94462 0.99731 1.22142 0.91704 0.87683 1.00610 1.48264 1.35893 1.20874 1.27791 1.21412 0.86317 0.81941 0.83054 1.90641 1.39805 1.39626 1.73326 1.21701 0.91397 0.92540 0.90508 0.85777 1.86574 1.93487 1.18048 1.36318 1.23341 0.94098 0.98814 1.00034 1.22920 0.97212 0.96057 1.01494 1.22755 0.96192 0.99073 0.99581 1.22913 0.96515 0.99106 0.98176 1.21706 0.91854 0.99820 0.87811 1.22000 0.98934 0.94153 1.01046 0.92898 0.95479 0.94169 0.87588 0.91394 0.91787 0.77273 0.87441 0.89902 0.91284 0.90139 0.91413 0.91168 0.89208 0.92189 0.90400 0.92124 0.92935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.05 11.30 55.43 0.63 -23.43 16 2 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 3 Si 0.89 20.67 29.54 -169.99 -5.02 15.65 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 7 C -0.51 -13.53 8.56 -34.44 -0.29 -13.83 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.15 2.06 -91.71 -0.19 0.96 16 10 C -0.13 -2.69 5.16 -26.60 -0.14 -2.83 16 11 C 0.10 1.71 4.97 -3.71 -0.02 1.69 16 12 N -0.59 -10.40 2.97 -172.77 -0.51 -10.91 16 13 C 0.49 8.36 7.02 -10.98 -0.08 8.28 16 14 O -0.55 -11.14 15.73 -14.26 -0.22 -11.36 16 15 C 0.10 1.40 2.60 -27.88 -0.07 1.32 16 16 H 0.12 1.69 7.10 -51.93 -0.37 1.32 16 17 O -0.54 -7.50 12.23 -55.04 -0.67 -8.17 16 18 C -0.14 -1.63 3.01 -89.81 -0.27 -1.90 16 19 C -0.14 -1.42 7.40 -25.92 -0.19 -1.61 16 20 C -0.14 -1.22 8.08 -25.92 -0.21 -1.43 16 21 C -0.13 -1.25 7.53 -25.92 -0.20 -1.45 16 22 C 0.11 2.00 6.44 -3.71 -0.02 1.97 16 23 C -0.12 -2.51 5.30 -26.61 -0.14 -2.65 16 24 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 25 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.11 2.52 6.03 -51.93 -0.31 2.21 16 28 H 0.07 0.98 5.15 -51.93 -0.27 0.71 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.38 4.53 6.54 45.56 0.30 4.83 16 31 H 0.11 1.26 6.42 -51.93 -0.33 0.92 16 32 H 0.08 0.80 5.93 -51.93 -0.31 0.49 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 37 H 0.09 0.89 7.70 -51.93 -0.40 0.49 16 38 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 315.87 15.07 4.76 4.76 Total: -1.00 -29.02 315.87 -8.79 -37.80 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.82 Total: 5.57 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: -1.92 Total: -9.91 kcal Atomic # 7 Polarization: -34.45 SS G_CDS: 0.11 Total: -34.34 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.90 Total: -19.53 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.02 -8.79 -37.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138163274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.400 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.98 seconds