Wall clock time and date at job start Mon Mar 30 2020 01:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00309 * 2 1 4 4 H 1.48502 * 109.46888 * 239.99728 * 3 2 1 5 5 H 1.48497 * 109.47296 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.46981 * 120.00161 * 3 2 1 7 7 C 1.37879 * 119.99672 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00005 * 180.02562 * 7 2 1 9 9 C 1.50708 * 119.99944 * 359.97438 * 7 2 1 10 10 C 1.53072 * 109.44922 * 59.79209 * 9 7 2 11 11 C 1.53189 * 109.29158 * 181.24324 * 10 9 7 12 12 N 1.46928 * 108.89422 * 305.57863 * 11 10 9 13 13 C 1.34779 * 120.62641 * 233.51737 * 12 11 10 14 14 O 1.21288 * 119.99430 * 175.34454 * 13 12 11 15 15 C 1.50701 * 120.00523 * 355.34444 * 13 12 11 16 16 H 1.09002 * 109.46367 * 52.82051 * 15 13 12 17 17 O 1.42893 * 109.47172 * 172.81697 * 15 13 12 18 18 C 1.52996 * 109.47006 * 292.81989 * 15 13 12 19 19 C 1.53774 * 113.61476 * 279.56303 * 18 15 13 20 20 C 1.53782 * 87.08187 * 220.01802 * 19 18 15 21 21 C 1.53778 * 87.07959 * 25.43262 * 20 19 18 22 22 C 1.46924 * 118.74051 * 53.53606 * 12 11 10 23 23 C 1.53038 * 109.45837 * 180.02562 * 9 7 2 24 24 H 0.97009 * 119.99687 * 0.02562 * 1 2 3 25 25 H 1.09000 * 109.44690 * 299.96523 * 9 7 2 26 26 H 1.08999 * 109.39382 * 61.36835 * 10 9 7 27 27 H 1.09004 * 109.62296 * 301.25307 * 10 9 7 28 28 H 1.09005 * 109.58970 * 185.71690 * 11 10 9 29 29 H 1.09002 * 109.59028 * 65.43571 * 11 10 9 30 30 H 0.96699 * 113.99874 * 59.99927 * 17 15 13 31 31 H 1.09005 * 112.85089 * 50.87346 * 18 15 13 32 32 H 1.08999 * 113.61634 * 334.56927 * 19 18 15 33 33 H 1.08998 * 113.61677 * 105.47055 * 19 18 15 34 34 H 1.08994 * 113.61398 * 270.88612 * 20 19 18 35 35 H 1.09006 * 113.61337 * 139.97862 * 20 19 18 36 36 H 1.08998 * 113.61480 * 220.01436 * 21 20 19 37 37 H 1.09003 * 113.69122 * 89.12423 * 21 20 19 38 38 H 1.08998 * 109.58431 * 66.17880 * 22 12 11 39 39 H 1.08995 * 109.58453 * 186.46799 * 22 12 11 40 40 H 1.09002 * 109.50484 * 58.66004 * 23 9 7 41 41 H 1.09000 * 109.52215 * 298.58126 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2508 -2.4992 -0.0005 10 6 0.3666 -2.5772 -1.2476 11 6 -0.4210 -3.8910 -1.2282 12 7 0.5216 -5.0086 -1.0827 13 6 0.5102 -6.0347 -1.9565 14 8 1.3472 -6.9088 -1.8762 15 6 -0.5423 -6.0959 -3.0333 16 1 -0.5510 -5.1567 -3.5865 17 8 -0.2482 -7.1720 -3.9263 18 6 -1.9134 -6.3240 -2.3939 19 6 -2.1842 -7.7918 -2.0242 20 6 -3.6216 -7.5705 -2.5238 21 6 -3.0558 -6.4524 -3.4152 22 6 1.4764 -4.9867 0.0338 23 6 2.2455 -3.6623 -0.0005 24 1 -0.4850 0.8402 -0.0004 25 1 0.6251 -2.5570 0.8901 26 1 0.9934 -2.5419 -2.1386 27 1 -0.3278 -1.7370 -1.2571 28 1 -0.9746 -3.9990 -2.1610 29 1 -1.1165 -3.8879 -0.3889 30 1 -0.2239 -8.0402 -3.5013 31 1 -2.1260 -5.6226 -1.5869 32 1 -1.6184 -8.5047 -2.6240 33 1 -2.1197 -7.9918 -0.9547 34 1 -4.3018 -7.2111 -1.7517 35 1 -4.0239 -8.4144 -3.0844 36 1 -3.6949 -5.5711 -3.4688 37 1 -2.7280 -6.7977 -4.3958 38 1 0.9373 -5.0713 0.9773 39 1 2.1732 -5.8190 -0.0649 40 1 2.8882 -3.5915 0.8770 41 1 2.8557 -3.6197 -0.9027 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138163274.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:08:32 Heat of formation + Delta-G solvation = -94.004599 kcal Electronic energy + Delta-G solvation = -21477.678713 eV Core-core repulsion = 18356.898688 eV Total energy + Delta-G solvation = -3120.780025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 4.43 seconds Orbital eigenvalues (eV) -41.74671 -39.78000 -38.43354 -36.55767 -35.36797 -33.27046 -31.86224 -29.95008 -27.91489 -26.55348 -25.32979 -24.16318 -23.79143 -21.59560 -20.31439 -20.06259 -18.76249 -18.25076 -17.91209 -17.29943 -16.55303 -16.30737 -16.20570 -15.22289 -15.04388 -14.87881 -14.58242 -14.48649 -14.10285 -13.90313 -13.44257 -13.29654 -13.11131 -12.93900 -12.80378 -12.77406 -12.47998 -12.19892 -12.12934 -11.95718 -11.58734 -11.45304 -11.35580 -11.10684 -11.02438 -10.87424 -10.43767 -10.31036 -9.58697 -8.08430 -6.21245 1.42622 1.43553 1.50071 1.50896 2.00773 2.44081 3.18128 3.23679 3.36726 3.63922 3.66257 3.86823 3.99845 4.10814 4.22687 4.24474 4.30832 4.45664 4.47409 4.55029 4.68649 4.79461 4.83828 4.87278 4.92336 4.95708 5.08088 5.14586 5.16656 5.22364 5.31291 5.41143 5.51596 5.59451 5.64037 5.97830 6.12010 6.37474 6.39766 6.56668 6.87336 7.08157 7.46397 8.94854 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.029315 B = 0.004842 C = 0.004467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 954.924478 B = 5781.025952 C = 6266.865859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.021 3.979 3 Si 0.947 3.053 4 H -0.276 1.276 5 H -0.281 1.281 6 H -0.275 1.275 7 C -0.538 4.538 8 H 0.045 0.955 9 C 0.046 3.954 10 C -0.118 4.118 11 C 0.113 3.887 12 N -0.597 5.597 13 C 0.483 3.517 14 O -0.585 6.585 15 C 0.108 3.892 16 H 0.129 0.871 17 O -0.544 6.544 18 C -0.146 4.146 19 C -0.143 4.143 20 C -0.130 4.130 21 C -0.124 4.124 22 C 0.115 3.885 23 C -0.114 4.114 24 H 0.262 0.738 25 H 0.006 0.994 26 H 0.025 0.975 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.385 0.615 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.063 0.937 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 -12.214 -4.452 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.178 4.178 3 Si 0.773 3.227 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.201 1.201 7 C -0.576 4.576 8 H 0.063 0.937 9 C 0.028 3.972 10 C -0.156 4.156 11 C -0.009 4.009 12 N -0.330 5.330 13 C 0.272 3.728 14 O -0.467 6.467 15 C 0.045 3.955 16 H 0.146 0.854 17 O -0.352 6.352 18 C -0.165 4.165 19 C -0.180 4.180 20 C -0.167 4.167 21 C -0.161 4.161 22 C -0.007 4.007 23 C -0.152 4.152 24 H 0.072 0.928 25 H 0.024 0.976 26 H 0.044 0.956 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.236 0.764 31 H 0.125 0.875 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.105 0.895 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -8.178 -12.072 -4.838 15.363 hybrid contribution 0.864 0.892 0.675 1.413 sum -7.314 -11.180 -4.163 13.994 Atomic orbital electron populations 1.69920 1.06698 1.27244 1.51045 1.25586 0.95701 1.01774 0.94765 0.85793 0.78591 0.79795 0.78529 1.20195 1.20672 1.20051 1.21515 0.92859 0.92364 1.50878 0.93680 1.18603 0.93000 0.91762 0.93861 1.21831 0.99477 0.96315 0.98013 1.22017 0.91002 0.85149 1.02695 1.48295 1.35764 1.21158 1.27766 1.22097 0.86468 0.81077 0.83139 1.90623 1.41201 1.40681 1.74148 1.21734 0.91464 0.92843 0.89418 0.85358 1.86557 1.93536 1.18575 1.36519 1.23377 0.92909 0.99660 1.00572 1.22974 0.98389 0.95294 1.01360 1.22732 0.95390 0.99108 0.99470 1.22895 0.95700 0.99831 0.97715 1.21596 0.92091 0.98128 0.88922 1.21849 0.98383 0.94502 1.00470 0.92832 0.97554 0.95590 0.89821 0.88358 0.90818 0.76352 0.87545 0.89502 0.91783 0.89468 0.90216 0.90308 0.89354 0.90775 0.90417 0.91824 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.24 11.30 21.45 0.24 -49.00 16 2 C 0.02 1.12 5.30 84.66 0.45 1.57 16 3 Si 0.95 42.43 29.54 68.60 2.03 44.45 16 4 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -28.83 8.56 25.60 0.22 -28.61 16 8 H 0.04 2.43 7.74 -2.91 -0.02 2.41 16 9 C 0.05 2.19 2.06 -11.50 -0.02 2.17 16 10 C -0.12 -5.07 5.16 30.68 0.16 -4.91 16 11 C 0.11 3.70 4.97 86.36 0.43 4.13 16 12 N -0.60 -20.21 2.97 -818.90 -2.44 -22.64 16 13 C 0.48 16.02 7.02 87.66 0.62 16.64 16 14 O -0.59 -23.02 15.73 15.88 0.25 -22.77 16 15 C 0.11 2.77 2.60 29.85 0.08 2.85 16 16 H 0.13 3.21 7.10 -2.39 -0.02 3.19 16 17 O -0.54 -14.20 12.23 -130.04 -1.59 -15.79 16 18 C -0.15 -2.95 3.01 -10.27 -0.03 -2.98 16 19 C -0.14 -2.58 7.40 31.12 0.23 -2.35 16 20 C -0.13 -1.90 8.08 31.12 0.25 -1.65 16 21 C -0.12 -2.04 7.53 31.12 0.23 -1.81 16 22 C 0.12 4.10 6.44 86.36 0.56 4.65 16 23 C -0.11 -4.68 5.30 30.67 0.16 -4.51 16 24 H 0.26 13.59 8.31 -92.70 -0.77 12.82 16 25 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 4.01 6.03 -2.39 -0.01 4.00 16 28 H 0.10 2.63 5.15 -2.38 -0.01 2.61 16 29 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.38 8.62 6.54 -74.06 -0.48 8.14 16 31 H 0.11 2.20 6.42 -2.38 -0.02 2.19 16 32 H 0.09 1.49 5.93 -2.39 -0.01 1.47 16 33 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 35 H 0.08 1.00 8.14 -2.38 -0.02 0.99 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.09 1.51 7.70 -2.39 -0.02 1.49 16 38 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.08 2.80 7.00 -2.39 -0.02 2.78 16 40 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 41 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -61.62 315.87 2.36 -59.25 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.54 Total: 21.32 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 3.33 Total: -14.82 kcal Atomic # 7 Polarization: -69.45 SS G_CDS: -2.19 Total: -71.65 kcal Atomic # 8 Polarization: -37.22 SS G_CDS: -1.34 Total: -38.56 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Total: -61.62 2.36 -59.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138163274.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.750 kcal (2) G-P(sol) polarization free energy of solvation -61.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.43 seconds