Wall clock time and date at job start Mon Mar 30 2020 00:30:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 N 1.46904 * 109.47010 * 184.14584 * 3 2 1 5 5 C 1.46898 * 110.99671 * 62.71765 * 4 3 2 6 6 C 1.50696 * 109.47365 * 67.91958 * 5 4 3 7 7 H 1.08000 * 119.99718 * 0.30241 * 6 5 4 8 8 C 1.37875 * 119.99914 * 180.30639 * 6 5 4 9 9 N 1.31509 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99875 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47172 * 89.99997 * 10 8 6 12 12 H 1.48496 * 109.47434 * 209.99990 * 10 8 6 13 13 H 1.48506 * 109.47323 * 330.00216 * 10 8 6 14 14 C 1.46900 * 110.99882 * 298.76238 * 4 3 2 15 15 C 1.50697 * 109.47166 * 289.43664 * 14 4 3 16 16 C 1.38427 * 122.53785 * 106.74473 * 15 14 4 17 17 C 1.33393 * 114.92122 * 179.97438 * 16 15 14 18 18 C 1.50688 * 125.20603 * 179.97438 * 17 16 15 19 19 S 1.75886 * 109.59141 * 0.02562 * 17 16 15 20 20 C 1.33383 * 122.54189 * 286.44716 * 15 14 4 21 21 C 1.50706 * 125.20224 * 0.03307 * 20 15 14 22 22 H 1.08996 * 109.47005 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46842 * 300.00400 * 1 2 3 24 24 H 1.08999 * 109.47060 * 59.99917 * 1 2 3 25 25 H 1.08997 * 109.47372 * 240.00134 * 2 1 3 26 26 H 1.08995 * 109.47077 * 119.99591 * 2 1 3 27 27 H 1.08997 * 109.47000 * 64.15133 * 3 2 1 28 28 H 1.08997 * 109.47290 * 304.14765 * 3 2 1 29 29 H 1.09004 * 109.46970 * 187.91787 * 5 4 3 30 30 H 1.09001 * 109.47232 * 307.91110 * 5 4 3 31 31 H 0.97009 * 120.00040 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.47221 * 169.43441 * 14 4 3 33 33 H 1.09007 * 109.47356 * 49.43840 * 14 4 3 34 34 H 1.07996 * 122.54050 * 359.95272 * 16 15 14 35 35 H 1.09001 * 109.47345 * 90.00064 * 18 17 16 36 36 H 1.09000 * 109.47730 * 210.00289 * 18 17 16 37 37 H 1.09001 * 109.47640 * 330.00244 * 18 17 16 38 38 H 1.09001 * 109.47497 * 94.15979 * 21 20 15 39 39 H 1.08993 * 109.47237 * 214.16168 * 21 20 15 40 40 H 1.09001 * 109.47267 * 334.16002 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5056 1.4438 -0.1001 5 6 3.9472 0.8452 -1.3668 6 6 3.5489 1.7407 -2.5115 7 1 3.0248 2.6648 -2.3170 8 6 3.8534 1.3803 -3.8070 9 7 4.4918 0.2552 -4.0438 10 14 3.3590 2.4901 -5.2260 11 1 4.4515 3.4573 -5.5017 12 1 3.1107 1.6657 -6.4359 13 1 2.1218 3.2295 -4.8683 14 6 4.1122 0.7556 1.0472 15 6 3.9342 1.5934 2.2871 16 6 3.0360 1.2621 3.2869 17 6 3.0030 2.1098 4.3163 18 6 2.1143 1.9738 5.5256 19 16 4.1544 3.4115 4.0455 20 6 4.6344 2.7072 2.5070 21 6 5.6749 3.2771 1.5775 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.7386 1.9344 0.9248 28 1 1.6172 1.9774 -0.8505 29 1 5.0310 0.7299 -1.3559 30 1 3.4792 -0.1316 -1.4897 31 1 4.7064 0.0018 -4.9552 32 1 5.1755 0.6049 0.8599 33 1 3.6279 -0.2107 1.1889 34 1 2.4092 0.3841 3.2371 35 1 2.6291 1.3935 6.2914 36 1 1.8788 2.9635 5.9167 37 1 1.1921 1.4657 5.2436 38 1 5.2132 4.0196 0.9266 39 1 6.4654 3.7476 2.1619 40 1 6.0986 2.4761 0.9716 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138567893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:45 Heat of formation + Delta-G solvation = 17.182014 kcal Electronic energy + Delta-G solvation = -18673.699990 eV Core-core repulsion = 16000.494249 eV Total energy + Delta-G solvation = -2673.205741 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.81737 -36.55768 -33.10237 -32.78229 -31.60167 -29.37576 -27.66110 -26.33594 -24.37642 -23.71989 -22.06582 -21.30253 -19.34287 -17.74614 -16.77600 -16.17102 -15.20889 -14.84998 -14.41053 -14.17191 -14.04807 -13.48784 -13.33243 -12.99607 -12.94794 -12.84269 -12.47000 -12.11080 -11.79153 -11.43546 -11.33487 -11.22562 -11.14898 -10.95647 -10.89205 -10.72835 -10.63189 -10.49925 -10.35067 -9.88633 -9.65921 -9.18804 -8.40200 -8.16834 -7.96806 -7.09331 -6.00117 -4.00452 1.28395 1.85970 2.24003 3.01467 3.33205 3.39421 3.43139 4.45370 4.90893 5.18743 5.25845 5.30335 5.36023 5.47677 5.50938 5.56770 5.61913 5.68695 5.87159 5.93447 5.94293 5.95291 6.01587 6.15304 6.21297 6.36596 6.41932 6.44468 6.50559 6.54837 6.73945 6.79844 6.93573 6.99905 7.34529 7.45921 7.84501 8.13639 8.26615 8.59713 9.07396 9.63436 11.10498 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.005412 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.991059 B = 5172.620067 C = 5882.589592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.163 4.163 3 C 0.070 3.930 4 N -0.526 5.526 5 C 0.189 3.811 6 C -0.501 4.501 7 H 0.062 0.938 8 C 0.056 3.944 9 N -0.900 5.900 10 Si 0.894 3.106 11 H -0.281 1.281 12 H -0.288 1.288 13 H -0.274 1.274 14 C 0.107 3.893 15 C -0.094 4.094 16 C -0.120 4.120 17 C -0.194 4.194 18 C -0.076 4.076 19 S 0.058 5.942 20 C -0.146 4.146 21 C -0.074 4.074 22 H 0.044 0.956 23 H 0.045 0.955 24 H 0.054 0.946 25 H 0.075 0.925 26 H 0.050 0.950 27 H 0.051 0.949 28 H 0.078 0.922 29 H 0.026 0.974 30 H -0.001 1.001 31 H 0.260 0.740 32 H 0.074 0.926 33 H 0.036 0.964 34 H 0.132 0.868 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.009 2.225 15.895 16.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C -0.059 4.059 4 N -0.248 5.248 5 C 0.064 3.936 6 C -0.539 4.539 7 H 0.080 0.920 8 C -0.145 4.145 9 N -0.540 5.540 10 Si 0.723 3.277 11 H -0.207 1.207 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.023 4.023 15 C -0.105 4.105 16 C -0.150 4.150 17 C -0.311 4.311 18 C -0.135 4.135 19 S 0.322 5.678 20 C -0.263 4.263 21 C -0.132 4.132 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.073 0.927 25 H 0.093 0.907 26 H 0.068 0.932 27 H 0.070 0.930 28 H 0.096 0.904 29 H 0.044 0.956 30 H 0.017 0.983 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.054 0.946 34 H 0.149 0.851 35 H 0.087 0.913 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.098 0.902 39 H 0.073 0.927 40 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.334 3.906 16.566 17.180 hybrid contribution -0.961 -1.603 -1.674 2.509 sum -3.295 2.303 14.892 15.425 Atomic orbital electron populations 1.21641 0.96528 1.00571 1.01230 1.22171 0.95580 1.00568 1.01892 1.21994 0.88667 0.94263 1.00962 1.62342 1.06233 1.54014 1.02254 1.19802 0.95676 0.93698 0.84438 1.21131 1.36441 1.06204 0.90153 0.92015 1.24953 0.95483 0.95260 0.98836 1.69954 1.41067 1.22511 1.20430 0.86553 0.78926 0.80471 0.81785 1.20709 1.21421 1.19921 1.20733 0.99865 0.93339 0.88358 1.18816 0.97303 0.97053 0.97313 1.19964 1.00749 1.00795 0.93521 1.24179 1.05101 0.99912 1.01864 1.20246 0.97536 1.02167 0.93526 1.83967 1.37458 1.28226 1.18157 1.24189 1.04654 0.99367 0.98105 1.20268 0.94638 1.01726 0.96600 0.93704 0.93577 0.92714 0.90693 0.93171 0.93044 0.90396 0.95577 0.98312 0.93034 0.90804 0.94587 0.85073 0.91292 0.91747 0.90925 0.90204 0.92686 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.16 -2.90 5.28 -26.73 -0.14 -3.04 16 3 C 0.07 1.35 5.03 -3.82 -0.02 1.34 16 4 N -0.53 -11.00 4.64 -237.51 -1.10 -12.10 16 5 C 0.19 4.74 4.55 -4.98 -0.02 4.72 16 6 C -0.50 -13.75 8.49 -34.44 -0.29 -14.04 16 7 H 0.06 1.70 7.26 -52.49 -0.38 1.32 16 8 C 0.06 1.55 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -26.39 13.29 55.43 0.74 -25.65 16 10 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 11 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 14 C 0.11 1.95 4.49 -4.98 -0.02 1.92 16 15 C -0.09 -1.53 4.47 -106.25 -0.47 -2.00 16 16 C -0.12 -1.75 9.47 -41.21 -0.39 -2.14 16 17 C -0.19 -2.56 6.51 -36.01 -0.23 -2.79 16 18 C -0.08 -0.75 10.38 36.00 0.37 -0.37 16 19 S 0.06 0.79 23.31 -107.50 -2.51 -1.72 16 20 C -0.15 -2.29 6.50 -36.00 -0.23 -2.52 16 21 C -0.07 -1.11 10.11 36.01 0.36 -0.74 16 22 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 23 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 24 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.07 1.55 6.11 -51.93 -0.32 1.23 16 26 H 0.05 0.83 6.43 -51.93 -0.33 0.50 16 27 H 0.05 0.95 7.14 -51.93 -0.37 0.58 16 28 H 0.08 1.67 6.93 -51.93 -0.36 1.31 16 29 H 0.03 0.71 7.83 -51.93 -0.41 0.30 16 30 H 0.00 -0.02 5.93 -51.93 -0.31 -0.33 16 31 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 32 H 0.07 1.36 6.95 -51.92 -0.36 1.00 16 33 H 0.04 0.64 5.85 -51.92 -0.30 0.33 16 34 H 0.13 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.08 1.31 6.89 -51.93 -0.36 0.95 16 LS Contribution 331.58 15.07 5.00 5.00 Total: -1.00 -28.74 331.58 -10.16 -38.90 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -6.44 Total: -0.99 kcal Atomic # 6 Polarization: -19.16 SS G_CDS: -0.82 Total: -19.99 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: -0.37 Total: -37.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -2.51 Total: -1.72 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.74 -10.16 -38.90 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138567893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.083 kcal (2) G-P(sol) polarization free energy of solvation -28.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.901 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds