Wall clock time and date at job start Mon Mar 30 2020 00:30:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53006 * 109.46917 * 2 1 4 4 N 1.46904 * 109.47010 * 184.14584 * 3 2 1 5 5 C 1.46898 * 110.99671 * 62.71765 * 4 3 2 6 6 C 1.50696 * 109.47365 * 67.91958 * 5 4 3 7 7 H 1.08000 * 119.99718 * 0.30241 * 6 5 4 8 8 C 1.37875 * 119.99914 * 180.30639 * 6 5 4 9 9 N 1.31509 * 120.00158 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99875 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47172 * 89.99997 * 10 8 6 12 12 H 1.48496 * 109.47434 * 209.99990 * 10 8 6 13 13 H 1.48506 * 109.47323 * 330.00216 * 10 8 6 14 14 C 1.46900 * 110.99882 * 298.76238 * 4 3 2 15 15 C 1.50697 * 109.47166 * 289.43664 * 14 4 3 16 16 C 1.38427 * 122.53785 * 106.74473 * 15 14 4 17 17 C 1.33393 * 114.92122 * 179.97438 * 16 15 14 18 18 C 1.50688 * 125.20603 * 179.97438 * 17 16 15 19 19 S 1.75886 * 109.59141 * 0.02562 * 17 16 15 20 20 C 1.33383 * 122.54189 * 286.44716 * 15 14 4 21 21 C 1.50706 * 125.20224 * 0.03307 * 20 15 14 22 22 H 1.08996 * 109.47005 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.46842 * 300.00400 * 1 2 3 24 24 H 1.08999 * 109.47060 * 59.99917 * 1 2 3 25 25 H 1.08997 * 109.47372 * 240.00134 * 2 1 3 26 26 H 1.08995 * 109.47077 * 119.99591 * 2 1 3 27 27 H 1.08997 * 109.47000 * 64.15133 * 3 2 1 28 28 H 1.08997 * 109.47290 * 304.14765 * 3 2 1 29 29 H 1.09004 * 109.46970 * 187.91787 * 5 4 3 30 30 H 1.09001 * 109.47232 * 307.91110 * 5 4 3 31 31 H 0.97009 * 120.00040 * 180.02562 * 9 8 6 32 32 H 1.09008 * 109.47221 * 169.43441 * 14 4 3 33 33 H 1.09007 * 109.47356 * 49.43840 * 14 4 3 34 34 H 1.07996 * 122.54050 * 359.95272 * 16 15 14 35 35 H 1.09001 * 109.47345 * 90.00064 * 18 17 16 36 36 H 1.09000 * 109.47730 * 210.00289 * 18 17 16 37 37 H 1.09001 * 109.47640 * 330.00244 * 18 17 16 38 38 H 1.09001 * 109.47497 * 94.15979 * 21 20 15 39 39 H 1.08993 * 109.47237 * 214.16168 * 21 20 15 40 40 H 1.09001 * 109.47267 * 334.16002 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5056 1.4438 -0.1001 5 6 3.9472 0.8452 -1.3668 6 6 3.5489 1.7407 -2.5115 7 1 3.0248 2.6648 -2.3170 8 6 3.8534 1.3803 -3.8070 9 7 4.4918 0.2552 -4.0438 10 14 3.3590 2.4901 -5.2260 11 1 4.4515 3.4573 -5.5017 12 1 3.1107 1.6657 -6.4359 13 1 2.1218 3.2295 -4.8683 14 6 4.1122 0.7556 1.0472 15 6 3.9342 1.5934 2.2871 16 6 3.0360 1.2621 3.2869 17 6 3.0030 2.1098 4.3163 18 6 2.1143 1.9738 5.5256 19 16 4.1544 3.4115 4.0455 20 6 4.6344 2.7072 2.5070 21 6 5.6749 3.2771 1.5775 22 1 -0.3633 -1.0276 -0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.8934 -0.5138 -0.8900 26 1 1.8933 -0.5137 0.8900 27 1 1.7386 1.9344 0.9248 28 1 1.6172 1.9774 -0.8505 29 1 5.0310 0.7299 -1.3559 30 1 3.4792 -0.1316 -1.4897 31 1 4.7064 0.0018 -4.9552 32 1 5.1755 0.6049 0.8599 33 1 3.6279 -0.2107 1.1889 34 1 2.4092 0.3841 3.2371 35 1 2.6291 1.3935 6.2914 36 1 1.8788 2.9635 5.9167 37 1 1.1921 1.4657 5.2436 38 1 5.2132 4.0196 0.9266 39 1 6.4654 3.7476 2.1619 40 1 6.0986 2.4761 0.9716 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138567893.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:30:44 Heat of formation + Delta-G solvation = 1.797723 kcal Electronic energy + Delta-G solvation = -18674.367103 eV Core-core repulsion = 16000.494249 eV Total energy + Delta-G solvation = -2673.872854 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.17711 -38.02569 -34.81793 -34.23904 -33.10784 -30.57010 -29.35125 -27.86651 -25.97288 -25.03265 -23.73497 -22.56724 -20.87972 -19.00263 -18.29247 -17.90782 -16.94050 -16.44383 -16.04156 -15.56023 -15.34343 -14.75287 -14.73039 -14.28560 -14.12282 -14.01302 -13.88364 -13.47726 -13.26554 -12.95950 -12.83237 -12.70152 -12.58871 -12.38049 -12.34783 -12.28059 -12.18135 -12.10400 -11.75343 -11.54174 -11.29052 -11.20105 -10.56185 -9.25972 -9.13667 -8.81545 -8.16150 -6.24734 0.15432 0.76174 1.10975 1.41180 1.41881 1.52720 1.81406 2.42435 3.16227 3.49809 3.99423 4.05373 4.10309 4.17279 4.33314 4.44331 4.50649 4.56133 4.60996 4.68546 4.73083 4.79450 4.84166 4.84666 4.91622 5.05636 5.11374 5.14062 5.18430 5.25973 5.32633 5.35132 5.44929 5.53695 5.58866 5.71104 5.75131 6.11848 6.43526 6.70275 6.91449 7.44168 8.94065 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.005412 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.991059 B = 5172.620067 C = 5882.589592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.155 4.155 3 C 0.076 3.924 4 N -0.530 5.530 5 C 0.207 3.793 6 C -0.513 4.513 7 H 0.057 0.943 8 C 0.005 3.995 9 N -0.934 5.934 10 Si 0.962 3.038 11 H -0.275 1.275 12 H -0.283 1.283 13 H -0.267 1.267 14 C 0.113 3.887 15 C -0.104 4.104 16 C -0.140 4.140 17 C -0.182 4.182 18 C -0.077 4.077 19 S 0.091 5.909 20 C -0.171 4.171 21 C -0.070 4.070 22 H 0.060 0.940 23 H 0.067 0.933 24 H 0.045 0.955 25 H 0.038 0.962 26 H 0.063 0.937 27 H 0.068 0.932 28 H 0.053 0.947 29 H -0.002 1.002 30 H -0.022 1.022 31 H 0.262 0.738 32 H 0.061 0.939 33 H 0.039 0.961 34 H 0.142 0.858 35 H 0.085 0.915 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.066 0.934 39 H 0.078 0.922 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.442 3.181 17.752 18.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.194 4.194 3 C -0.052 4.052 4 N -0.253 5.253 5 C 0.080 3.920 6 C -0.551 4.551 7 H 0.075 0.925 8 C -0.193 4.193 9 N -0.575 5.575 10 Si 0.787 3.213 11 H -0.200 1.200 12 H -0.209 1.209 13 H -0.191 1.191 14 C -0.017 4.017 15 C -0.115 4.115 16 C -0.170 4.170 17 C -0.299 4.299 18 C -0.136 4.136 19 S 0.355 5.645 20 C -0.289 4.289 21 C -0.128 4.128 22 H 0.079 0.921 23 H 0.086 0.914 24 H 0.064 0.936 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.016 0.984 30 H -0.005 1.005 31 H 0.071 0.929 32 H 0.080 0.920 33 H 0.058 0.942 34 H 0.160 0.840 35 H 0.103 0.897 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.085 0.915 39 H 0.096 0.904 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -3.773 4.870 18.444 19.446 hybrid contribution -0.494 -1.889 -2.134 2.892 sum -4.267 2.981 16.310 17.121 Atomic orbital electron populations 1.21596 0.94015 1.01863 1.01877 1.22045 0.97753 0.98889 1.00678 1.21924 0.87461 0.95278 1.00561 1.62232 1.07534 1.54068 1.01474 1.19416 0.93598 0.92606 0.86335 1.21394 1.36268 1.06227 0.91232 0.92472 1.25792 0.95351 0.96620 1.01535 1.70077 1.42117 1.24188 1.21108 0.85499 0.78852 0.78611 0.78360 1.20021 1.20890 1.19105 1.20647 0.98896 0.93855 0.88310 1.18724 0.98597 0.97298 0.96919 1.20001 1.01294 1.01976 0.93712 1.24676 1.04342 0.98665 1.02259 1.20401 0.97469 1.03420 0.92314 1.83832 1.37024 1.27721 1.15875 1.24351 1.04959 0.99851 0.99721 1.20193 0.95237 1.00814 0.96601 0.92127 0.91408 0.93550 0.94348 0.91841 0.91358 0.92809 0.98410 1.00475 0.92873 0.92045 0.94244 0.84035 0.89650 0.90516 0.89653 0.91496 0.90370 0.91917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.87 9.91 71.98 0.71 -3.16 16 2 C -0.15 -5.49 5.28 30.60 0.16 -5.33 16 3 C 0.08 2.97 5.03 86.30 0.43 3.41 16 4 N -0.53 -22.94 4.64 -905.34 -4.20 -27.14 16 5 C 0.21 10.93 4.55 85.56 0.39 11.31 16 6 C -0.51 -29.08 8.49 25.60 0.22 -28.86 16 7 H 0.06 3.23 7.26 -2.91 -0.02 3.21 16 8 C 0.00 0.27 5.46 84.65 0.46 0.73 16 9 N -0.93 -56.28 13.29 21.45 0.28 -55.99 16 10 Si 0.96 44.73 29.54 68.60 2.03 46.75 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 13 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 14 C 0.11 4.20 4.49 85.56 0.38 4.58 16 15 C -0.10 -3.33 4.47 -20.92 -0.09 -3.42 16 16 C -0.14 -3.81 9.47 21.22 0.20 -3.60 16 17 C -0.18 -4.28 6.51 24.58 0.16 -4.12 16 18 C -0.08 -1.21 10.38 71.23 0.74 -0.47 16 19 S 0.09 2.26 23.31 -56.49 -1.32 0.95 16 20 C -0.17 -5.27 6.50 24.59 0.16 -5.11 16 21 C -0.07 -2.13 10.11 71.24 0.72 -1.41 16 22 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.04 1.64 6.11 -2.39 -0.01 1.63 16 26 H 0.06 2.06 6.43 -2.39 -0.02 2.05 16 27 H 0.07 2.45 7.14 -2.39 -0.02 2.43 16 28 H 0.05 2.35 6.93 -2.39 -0.02 2.33 16 29 H 0.00 -0.13 7.83 -2.38 -0.02 -0.15 16 30 H -0.02 -1.26 5.93 -2.39 -0.01 -1.28 16 31 H 0.26 14.94 8.31 -92.70 -0.77 14.17 16 32 H 0.06 2.39 6.95 -2.38 -0.02 2.38 16 33 H 0.04 1.42 5.85 -2.38 -0.01 1.41 16 34 H 0.14 3.49 8.06 -2.91 -0.02 3.46 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.06 2.11 6.89 -2.39 -0.02 2.10 16 Total: -1.00 -62.90 331.58 2.45 -60.45 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: 1.01 Total: 10.43 kcal Atomic # 6 Polarization: -40.09 SS G_CDS: 4.65 Total: -35.44 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -3.92 Total: -83.14 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 2.26 SS G_CDS: -1.32 Total: 0.95 kcal Total: -62.90 2.45 -60.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138567893.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.249 kcal (2) G-P(sol) polarization free energy of solvation -62.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds