Wall clock time and date at job start Mon Mar 30 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46923 * 2 1 4 4 C 1.53001 * 109.46923 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47037 * 186.96487 * 4 3 2 6 6 C 1.36938 * 120.00221 * 278.31537 * 5 4 3 7 7 H 1.07997 * 119.99733 * 353.06710 * 6 5 4 8 8 C 1.38809 * 119.99913 * 173.07224 * 6 5 4 9 9 N 1.31615 * 120.00245 * 40.26889 * 8 6 5 10 10 Si 1.86807 * 119.99672 * 220.27188 * 8 6 5 11 11 H 1.48497 * 109.47235 * 89.99907 * 10 8 6 12 12 H 1.48497 * 109.46947 * 210.00110 * 10 8 6 13 13 H 1.48496 * 109.46917 * 329.99855 * 10 8 6 14 14 C 1.46501 * 119.99726 * 98.31106 * 5 4 3 15 15 C 1.50705 * 109.47103 * 260.98556 * 14 5 4 16 16 C 1.38420 * 122.53801 * 264.95578 * 15 14 5 17 17 C 1.33393 * 114.92163 * 179.97438 * 16 15 14 18 18 C 1.50693 * 125.20666 * 179.97438 * 17 16 15 19 19 S 1.75889 * 109.58999 * 359.97438 * 17 16 15 20 20 C 1.33386 * 122.53621 * 84.67084 * 15 14 5 21 21 C 1.50692 * 125.20674 * 0.02562 * 20 15 14 22 22 H 1.09005 * 109.47316 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47314 * 299.99651 * 1 2 3 24 24 H 1.08997 * 109.47382 * 59.99812 * 1 2 3 25 25 H 1.09004 * 109.46558 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.46912 * 120.00437 * 2 1 3 27 27 H 1.09005 * 109.46843 * 60.00114 * 3 2 1 28 28 H 1.08997 * 109.47245 * 300.00272 * 3 2 1 29 29 H 1.08999 * 109.46798 * 66.97172 * 4 3 2 30 30 H 1.08996 * 109.46911 * 306.96539 * 4 3 2 31 31 H 0.97006 * 119.99855 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47441 * 20.98724 * 14 5 4 33 33 H 1.09002 * 109.47094 * 140.98626 * 14 5 4 34 34 H 1.07997 * 122.54288 * 359.95608 * 16 15 14 35 35 H 1.09004 * 109.47412 * 89.99421 * 18 17 16 36 36 H 1.08999 * 109.47514 * 209.99612 * 18 17 16 37 37 H 1.09005 * 109.46707 * 329.99899 * 18 17 16 38 38 H 1.09003 * 109.47061 * 98.37331 * 21 20 15 39 39 H 1.08999 * 109.47489 * 218.37402 * 21 20 15 40 40 H 1.08997 * 109.47336 * 338.37418 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8136 0.1681 6 6 4.1252 3.6533 -0.9115 7 1 3.9259 3.2747 -1.9031 8 6 4.4494 4.9909 -0.7313 9 7 5.3853 5.3311 0.1293 10 14 3.5573 6.3082 -1.7104 11 1 2.3565 6.7549 -0.9596 12 1 4.4644 7.4639 -1.9264 13 1 3.1419 5.7528 -3.0234 14 6 4.4747 3.2863 1.4907 15 6 3.3574 4.0824 2.1145 16 6 3.2865 5.4619 2.0257 17 6 2.2331 6.0109 2.6326 18 6 1.9296 7.4861 2.6810 19 16 1.2525 4.7493 3.3678 20 6 2.3589 3.5105 2.7891 21 6 2.2037 2.0298 3.0218 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9563 -0.8899 29 1 3.9336 1.0404 -0.9449 30 1 3.9329 0.8247 0.8220 31 1 5.6121 6.2659 0.2549 32 1 4.7097 2.4315 2.1248 33 1 5.3578 3.9172 1.3896 34 1 4.0281 6.0494 1.5049 35 1 1.3129 7.7586 1.8245 36 1 1.3945 7.7170 3.6021 37 1 2.8620 8.0500 2.6514 38 1 2.5761 1.7770 4.0146 39 1 1.1504 1.7589 2.9491 40 1 2.7723 1.4823 2.2702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138570344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:31 Heat of formation + Delta-G solvation = 45.271708 kcal Electronic energy + Delta-G solvation = -19482.364631 eV Core-core repulsion = 16810.376951 eV Total energy + Delta-G solvation = -2671.987680 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -38.16665 -35.82411 -33.99979 -32.51471 -31.23277 -29.16349 -27.93095 -26.29413 -24.10242 -23.36802 -21.43007 -20.40000 -20.12769 -17.40168 -16.82719 -16.17392 -15.03051 -14.77188 -14.20950 -13.70252 -13.55952 -13.38995 -13.28731 -12.83988 -12.65687 -12.60041 -12.13555 -11.99726 -11.78123 -11.36652 -11.19968 -11.07329 -10.87061 -10.78429 -10.66942 -10.42727 -10.40105 -10.16514 -9.98373 -9.91729 -9.73850 -9.63151 -8.41628 -7.53253 -7.35637 -6.90594 -5.86083 -3.05947 1.87331 2.45780 2.81544 3.41770 3.49429 3.55888 3.77714 4.52673 5.12474 5.35409 5.38161 5.53829 5.58001 5.69889 5.74700 5.77163 5.85359 5.92996 5.95797 6.02146 6.14617 6.21665 6.28112 6.32301 6.37294 6.39777 6.51858 6.56386 6.59704 6.82175 6.83799 6.96484 7.17715 7.21823 7.45940 7.55672 7.81737 7.83755 8.37053 9.13753 9.85020 10.28062 11.09232 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.010467 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.535256 B = 2674.462812 C = 3805.065401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.122 4.122 3 C -0.152 4.152 4 C 0.152 3.848 5 N -0.585 5.585 6 C -0.251 4.251 7 H 0.078 0.922 8 C 0.016 3.984 9 N -0.869 5.869 10 Si 0.855 3.145 11 H -0.284 1.284 12 H -0.295 1.295 13 H -0.281 1.281 14 C 0.180 3.820 15 C -0.067 4.067 16 C -0.094 4.094 17 C -0.207 4.207 18 C -0.071 4.071 19 S 0.001 5.999 20 C -0.190 4.190 21 C -0.080 4.080 22 H 0.045 0.955 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.073 0.927 28 H 0.056 0.944 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.254 0.746 32 H 0.025 0.975 33 H 0.129 0.871 34 H 0.157 0.843 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.964 -4.368 5.414 9.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.161 4.161 3 C -0.192 4.192 4 C 0.025 3.975 5 N -0.303 5.303 6 C -0.378 4.378 7 H 0.096 0.904 8 C -0.182 4.182 9 N -0.514 5.514 10 Si 0.684 3.316 11 H -0.211 1.211 12 H -0.222 1.222 13 H -0.206 1.206 14 C 0.052 3.948 15 C -0.081 4.081 16 C -0.124 4.124 17 C -0.323 4.323 18 C -0.130 4.130 19 S 0.264 5.736 20 C -0.307 4.307 21 C -0.138 4.138 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.146 0.854 34 H 0.174 0.826 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.075 0.925 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -7.187 -4.245 6.256 10.431 hybrid contribution 0.329 0.929 -1.387 1.701 sum -6.858 -3.316 4.869 9.041 Atomic orbital electron populations 1.21757 0.96760 1.00498 1.01633 1.21514 0.95121 0.98414 1.01010 1.22509 0.99162 0.94524 1.03036 1.20842 0.91777 0.86296 0.98542 1.44089 1.73036 1.08953 1.04260 1.19090 1.41640 0.89303 0.87787 0.90435 1.24393 0.98746 0.96983 0.98078 1.70056 1.25789 1.16596 1.38967 0.86953 0.81848 0.82550 0.80213 1.21094 1.22232 1.20635 1.20310 0.96120 0.95095 0.83297 1.19824 0.98391 0.94207 0.95668 1.20771 0.98162 0.95637 0.97790 1.24186 1.01049 0.98215 1.08855 1.20180 1.01838 0.89787 1.01221 1.83578 1.31737 0.99290 1.59027 1.23981 0.99505 0.98008 1.09207 1.20476 1.01529 0.90055 1.01777 0.93602 0.93080 0.93058 0.92721 0.92755 0.90836 0.92563 0.94215 0.94191 0.93399 0.95682 0.85444 0.82591 0.91911 0.92359 0.91205 0.92529 0.92545 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.93 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.74 5.93 -26.73 -0.16 -1.90 16 3 C -0.15 -2.73 4.78 -26.73 -0.13 -2.86 16 4 C 0.15 2.98 4.94 -4.04 -0.02 2.96 16 5 N -0.58 -13.71 2.56 -174.60 -0.45 -14.16 16 6 C -0.25 -6.56 9.51 -15.06 -0.14 -6.70 16 7 H 0.08 2.06 8.06 -52.49 -0.42 1.63 16 8 C 0.02 0.42 3.55 -17.43 -0.06 0.36 16 9 N -0.87 -22.85 8.43 55.49 0.47 -22.39 16 10 Si 0.86 21.10 29.60 -169.99 -5.03 16.06 16 11 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 12 H -0.30 -7.31 7.11 56.52 0.40 -6.91 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 C 0.18 4.12 4.92 -5.19 -0.03 4.10 16 15 C -0.07 -1.48 5.16 -106.25 -0.55 -2.03 16 16 C -0.09 -2.12 8.56 -41.21 -0.35 -2.47 16 17 C -0.21 -4.20 6.51 -36.01 -0.23 -4.43 16 18 C -0.07 -1.19 10.38 36.00 0.37 -0.82 16 19 S 0.00 0.02 23.31 -107.50 -2.51 -2.48 16 20 C -0.19 -3.76 5.90 -36.01 -0.21 -3.97 16 21 C -0.08 -1.32 8.20 36.00 0.30 -1.02 16 22 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 23 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 25 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 27 H 0.07 1.39 4.49 -51.93 -0.23 1.16 16 28 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 29 H 0.04 0.78 8.11 -51.93 -0.42 0.36 16 30 H 0.04 0.71 6.81 -51.93 -0.35 0.36 16 31 H 0.25 6.52 7.94 -40.82 -0.32 6.19 16 32 H 0.02 0.53 6.95 -51.93 -0.36 0.16 16 33 H 0.13 3.28 5.24 -51.93 -0.27 3.01 16 34 H 0.16 3.79 5.00 -52.49 -0.26 3.53 16 35 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.86 8.01 -51.93 -0.42 0.44 16 40 H 0.09 1.48 3.53 -51.93 -0.18 1.29 16 LS Contribution 319.04 15.07 4.81 4.81 Total: -1.00 -26.77 319.04 -9.83 -36.60 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.27 Total: 1.91 kcal Atomic # 6 Polarization: -19.51 SS G_CDS: -0.85 Total: -20.35 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.02 Total: -36.55 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.06 kcal Atomic # 16 Polarization: 0.02 SS G_CDS: -2.51 Total: -2.48 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -26.77 -9.83 -36.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138570344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.875 kcal (2) G-P(sol) polarization free energy of solvation -26.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds