Wall clock time and date at job start Mon Mar 30 2020 00:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46923 * 2 1 4 4 C 1.53001 * 109.46923 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.47037 * 186.96487 * 4 3 2 6 6 C 1.36938 * 120.00221 * 278.31537 * 5 4 3 7 7 H 1.07997 * 119.99733 * 353.06710 * 6 5 4 8 8 C 1.38809 * 119.99913 * 173.07224 * 6 5 4 9 9 N 1.31615 * 120.00245 * 40.26889 * 8 6 5 10 10 Si 1.86807 * 119.99672 * 220.27188 * 8 6 5 11 11 H 1.48497 * 109.47235 * 89.99907 * 10 8 6 12 12 H 1.48497 * 109.46947 * 210.00110 * 10 8 6 13 13 H 1.48496 * 109.46917 * 329.99855 * 10 8 6 14 14 C 1.46501 * 119.99726 * 98.31106 * 5 4 3 15 15 C 1.50705 * 109.47103 * 260.98556 * 14 5 4 16 16 C 1.38420 * 122.53801 * 264.95578 * 15 14 5 17 17 C 1.33393 * 114.92163 * 179.97438 * 16 15 14 18 18 C 1.50693 * 125.20666 * 179.97438 * 17 16 15 19 19 S 1.75889 * 109.58999 * 359.97438 * 17 16 15 20 20 C 1.33386 * 122.53621 * 84.67084 * 15 14 5 21 21 C 1.50692 * 125.20674 * 0.02562 * 20 15 14 22 22 H 1.09005 * 109.47316 * 179.97438 * 1 2 3 23 23 H 1.08995 * 109.47314 * 299.99651 * 1 2 3 24 24 H 1.08997 * 109.47382 * 59.99812 * 1 2 3 25 25 H 1.09004 * 109.46558 * 240.00596 * 2 1 3 26 26 H 1.08997 * 109.46912 * 120.00437 * 2 1 3 27 27 H 1.09005 * 109.46843 * 60.00114 * 3 2 1 28 28 H 1.08997 * 109.47245 * 300.00272 * 3 2 1 29 29 H 1.08999 * 109.46798 * 66.97172 * 4 3 2 30 30 H 1.08996 * 109.46911 * 306.96539 * 4 3 2 31 31 H 0.97006 * 119.99855 * 179.97438 * 9 8 6 32 32 H 1.09001 * 109.47441 * 20.98724 * 14 5 4 33 33 H 1.09002 * 109.47094 * 140.98626 * 14 5 4 34 34 H 1.07997 * 122.54288 * 359.95608 * 16 15 14 35 35 H 1.09004 * 109.47412 * 89.99421 * 18 17 16 36 36 H 1.08999 * 109.47514 * 209.99612 * 18 17 16 37 37 H 1.09005 * 109.46707 * 329.99899 * 18 17 16 38 38 H 1.09003 * 109.47061 * 98.37331 * 21 20 15 39 39 H 1.08999 * 109.47489 * 218.37402 * 21 20 15 40 40 H 1.08997 * 109.47336 * 338.37418 * 21 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0582 2.8136 0.1681 6 6 4.1252 3.6533 -0.9115 7 1 3.9259 3.2747 -1.9031 8 6 4.4494 4.9909 -0.7313 9 7 5.3853 5.3311 0.1293 10 14 3.5573 6.3082 -1.7104 11 1 2.3565 6.7549 -0.9596 12 1 4.4644 7.4639 -1.9264 13 1 3.1419 5.7528 -3.0234 14 6 4.4747 3.2863 1.4907 15 6 3.3574 4.0824 2.1145 16 6 3.2865 5.4619 2.0257 17 6 2.2331 6.0109 2.6326 18 6 1.9296 7.4861 2.6810 19 16 1.2525 4.7493 3.3678 20 6 2.3589 3.5105 2.7891 21 6 2.2037 2.0298 3.0218 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 1.8933 -0.5138 -0.8901 26 1 1.8933 -0.5139 0.8899 27 1 1.6766 1.9563 0.8901 28 1 1.6766 1.9563 -0.8899 29 1 3.9336 1.0404 -0.9449 30 1 3.9329 0.8247 0.8220 31 1 5.6121 6.2659 0.2549 32 1 4.7097 2.4315 2.1248 33 1 5.3578 3.9172 1.3896 34 1 4.0281 6.0494 1.5049 35 1 1.3129 7.7586 1.8245 36 1 1.3945 7.7170 3.6021 37 1 2.8620 8.0500 2.6514 38 1 2.5761 1.7770 4.0146 39 1 1.1504 1.7589 2.9491 40 1 2.7723 1.4823 2.2702 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138570344.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:25:31 Heat of formation + Delta-G solvation = 33.951854 kcal Electronic energy + Delta-G solvation = -19482.855496 eV Core-core repulsion = 16810.376951 eV Total energy + Delta-G solvation = -2672.478546 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 267.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.79378 -37.36888 -35.53867 -34.03672 -32.95419 -30.58258 -29.36132 -28.08588 -25.69431 -24.86269 -22.89597 -21.91517 -21.65682 -19.09759 -18.60849 -17.71641 -16.66957 -16.44242 -15.81521 -15.38468 -15.16581 -14.79331 -14.65986 -14.16459 -14.14885 -13.98748 -13.62156 -13.40439 -13.27232 -13.05252 -12.86604 -12.62948 -12.43437 -12.34906 -12.16703 -12.06618 -11.87207 -11.73200 -11.67566 -11.53495 -11.36810 -11.15865 -10.33687 -9.07204 -8.92803 -8.77313 -7.83348 -5.04375 0.30145 0.94250 1.24095 1.40319 1.48089 1.51993 2.12283 2.54335 3.15795 3.83040 4.08737 4.20458 4.26626 4.34418 4.45545 4.46565 4.53768 4.58053 4.64411 4.71386 4.76910 4.91557 4.95110 5.02596 5.08492 5.10547 5.13241 5.21465 5.22666 5.27169 5.44355 5.53822 5.56639 5.68011 5.77723 5.78898 5.85756 6.09527 6.48084 7.18687 7.96667 8.35464 9.08039 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.013692 B = 0.010467 C = 0.007357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2044.535256 B = 2674.462812 C = 3805.065401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.116 4.116 3 C -0.140 4.140 4 C 0.149 3.851 5 N -0.596 5.596 6 C -0.260 4.260 7 H 0.066 0.934 8 C -0.008 4.008 9 N -0.877 5.877 10 Si 0.891 3.109 11 H -0.294 1.294 12 H -0.297 1.297 13 H -0.283 1.283 14 C 0.187 3.813 15 C -0.094 4.094 16 C -0.126 4.126 17 C -0.218 4.218 18 C -0.072 4.072 19 S 0.052 5.948 20 C -0.190 4.190 21 C -0.079 4.079 22 H 0.068 0.932 23 H 0.050 0.950 24 H 0.042 0.958 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.027 0.973 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.251 0.749 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.133 0.867 35 H 0.063 0.937 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.709 -5.645 6.768 11.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.154 4.154 3 C -0.180 4.180 4 C 0.024 3.976 5 N -0.315 5.315 6 C -0.389 4.389 7 H 0.084 0.916 8 C -0.206 4.206 9 N -0.523 5.523 10 Si 0.721 3.279 11 H -0.222 1.222 12 H -0.224 1.224 13 H -0.208 1.208 14 C 0.059 3.941 15 C -0.108 4.108 16 C -0.156 4.156 17 C -0.334 4.334 18 C -0.131 4.131 19 S 0.315 5.685 20 C -0.308 4.308 21 C -0.137 4.137 22 H 0.087 0.913 23 H 0.069 0.931 24 H 0.061 0.939 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.085 0.915 28 H 0.046 0.954 29 H 0.052 0.948 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.150 0.850 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.936 -5.539 7.610 12.979 hybrid contribution 0.852 1.305 -1.763 2.353 sum -8.084 -4.233 5.847 10.838 Atomic orbital electron populations 1.21737 0.95610 1.01881 1.01239 1.21459 0.96075 0.95705 1.02150 1.22330 0.97609 0.96836 1.01239 1.21003 0.92924 0.84637 0.99034 1.44229 1.73466 1.10037 1.03803 1.19153 1.41362 0.90107 0.88266 0.91605 1.24658 0.99269 0.97718 0.98932 1.70148 1.26227 1.16347 1.39556 0.86389 0.80798 0.81482 0.79225 1.22157 1.22449 1.20837 1.20055 0.95542 0.95139 0.83401 1.19699 0.99348 0.94107 0.97652 1.20690 0.99115 0.96133 0.99687 1.24648 1.00583 1.00366 1.07825 1.20282 1.02461 0.87770 1.02595 1.83316 1.30014 0.97564 1.57607 1.24400 0.98768 0.99994 1.07600 1.20559 1.02683 0.87627 1.02850 0.91327 0.93105 0.93884 0.92185 0.91001 0.91544 0.95388 0.94810 0.92100 0.93738 0.94164 0.88657 0.84976 0.91878 0.89622 0.90819 0.90326 0.90885 0.89820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.40 9.91 71.98 0.71 -2.68 16 2 C -0.12 -2.98 5.93 30.59 0.18 -2.80 16 3 C -0.14 -4.85 4.78 30.59 0.15 -4.71 16 4 C 0.15 5.72 4.94 86.38 0.43 6.15 16 5 N -0.60 -28.12 2.56 -706.33 -1.81 -29.93 16 6 C -0.26 -13.91 9.51 84.03 0.80 -13.12 16 7 H 0.07 3.59 8.06 -2.91 -0.02 3.57 16 8 C -0.01 -0.44 3.55 84.86 0.30 -0.14 16 9 N -0.88 -47.58 8.43 21.65 0.18 -47.40 16 10 Si 0.89 44.29 29.60 68.60 2.03 46.32 16 11 H -0.29 -14.94 7.11 99.48 0.71 -14.24 16 12 H -0.30 -14.72 7.11 99.48 0.71 -14.01 16 13 H -0.28 -13.99 7.11 99.48 0.71 -13.28 16 14 C 0.19 8.61 4.92 85.63 0.42 9.03 16 15 C -0.09 -4.16 5.16 -20.92 -0.11 -4.27 16 16 C -0.13 -5.76 8.56 21.22 0.18 -5.58 16 17 C -0.22 -8.61 6.51 24.59 0.16 -8.45 16 18 C -0.07 -2.32 10.38 71.23 0.74 -1.58 16 19 S 0.05 1.81 23.31 -56.49 -1.32 0.50 16 20 C -0.19 -7.16 5.90 24.58 0.14 -7.02 16 21 C -0.08 -2.35 8.20 71.23 0.58 -1.76 16 22 H 0.07 1.28 8.14 -2.38 -0.02 1.26 16 23 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 24 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.06 1.49 8.14 -2.38 -0.02 1.47 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.07 2.39 4.49 -2.38 -0.01 2.38 16 28 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.03 1.31 8.11 -2.39 -0.02 1.30 16 30 H 0.06 2.06 6.81 -2.39 -0.02 2.04 16 31 H 0.25 13.36 7.94 -92.70 -0.74 12.62 16 32 H 0.04 1.67 6.95 -2.39 -0.02 1.65 16 33 H 0.10 5.06 5.24 -2.39 -0.01 5.05 16 34 H 0.13 6.65 5.00 -2.91 -0.01 6.63 16 35 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.07 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.07 1.94 8.01 -2.39 -0.02 1.92 16 40 H 0.08 2.58 3.53 -2.39 -0.01 2.57 16 Total: -1.00 -58.00 319.04 4.83 -53.18 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: 1.05 Total: 14.26 kcal Atomic # 6 Polarization: -41.61 SS G_CDS: 4.69 Total: -36.92 kcal Atomic # 7 Polarization: -75.70 SS G_CDS: -1.63 Total: -77.33 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.32 Total: 0.50 kcal Total: -58.00 4.83 -53.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138570344.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.127 kcal (2) G-P(sol) polarization free energy of solvation -58.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds