Wall clock time and date at job start Mon Mar 30 2020 00:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.50706 * 109.46968 * 240.00013 * 2 1 3 5 5 H 1.08002 * 119.99348 * 241.34674 * 4 2 1 6 6 C 1.37868 * 120.00017 * 61.34973 * 4 2 1 7 7 N 1.31517 * 120.00260 * 193.97657 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 13.97566 * 6 4 2 9 9 H 1.48500 * 109.47307 * 84.54569 * 8 6 4 10 10 H 1.48506 * 109.47196 * 204.55046 * 8 6 4 11 11 H 1.48504 * 109.47035 * 324.54693 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00081 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99867 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99876 * 359.72472 * 14 13 12 16 16 C 1.50696 * 120.00059 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47401 * 179.72249 * 16 14 13 18 18 C 1.50704 * 109.46959 * 179.97438 * 17 16 14 19 19 N 1.33313 * 126.54794 * 269.68389 * 18 17 16 20 20 N 1.29000 * 107.34917 * 179.83741 * 19 18 17 21 21 N 1.28778 * 108.73068 * 0.43912 * 20 19 18 22 22 H 0.96997 * 125.45094 * 179.72762 * 21 20 19 23 23 N 1.28884 * 109.09588 * 359.72340 * 21 20 19 24 24 H 1.08994 * 109.46985 * 309.36558 * 1 2 3 25 25 H 1.08996 * 109.46856 * 69.36746 * 1 2 3 26 26 H 1.08993 * 109.47116 * 189.36548 * 1 2 3 27 27 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47355 * 300.00078 * 3 2 1 29 29 H 1.08995 * 109.47254 * 59.99913 * 3 2 1 30 30 H 0.96998 * 120.00066 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46908 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46723 * 60.00019 * 12 2 1 33 33 H 0.97000 * 119.99916 * 359.97438 * 13 12 2 34 34 H 1.09005 * 109.47135 * 299.72537 * 16 14 13 35 35 H 1.09007 * 109.47349 * 59.72029 * 16 14 13 36 36 H 1.08998 * 109.47411 * 299.99879 * 17 16 14 37 37 H 1.09002 * 109.46673 * 60.00209 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6011 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7083 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3749 0.2192 4.8999 17 6 1.8798 -0.5056 6.1492 18 6 1.3775 0.2049 7.3796 19 7 1.9923 1.1904 8.0339 20 7 1.2363 1.5250 9.0241 21 7 0.1857 0.7803 9.0124 22 1 -0.5419 0.8238 9.6524 23 7 0.2558 -0.0320 8.0142 24 1 -0.3633 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0139 0.1672 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6980 -0.6297 -4.4269 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9944 0.7582 2.3564 34 1 1.7415 1.2457 4.9024 35 1 0.2849 0.2228 4.8976 36 1 1.5132 -1.5321 6.1468 37 1 2.9698 -0.5091 6.1516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141962603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:04 Heat of formation + Delta-G solvation = 88.951434 kcal Electronic energy + Delta-G solvation = -19891.559711 eV Core-core repulsion = 16707.465663 eV Total energy + Delta-G solvation = -3184.094048 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.75107 -39.52637 -36.85852 -35.13547 -34.19014 -33.33626 -31.83199 -31.34186 -26.93868 -26.39546 -25.30033 -24.82496 -24.44122 -22.05535 -20.09060 -19.42759 -19.15478 -17.46907 -16.96437 -16.09559 -15.71148 -15.29242 -15.11008 -14.73041 -14.12554 -13.85704 -13.25854 -13.02848 -12.82471 -12.69544 -12.55069 -12.31290 -12.20932 -12.05669 -11.57396 -11.48537 -11.29151 -11.14955 -10.62375 -10.45158 -10.33429 -10.18639 -10.08179 -9.58015 -9.12906 -8.70110 -8.56555 -8.45725 -6.15910 -4.13334 0.84093 1.79672 2.02358 2.91443 3.22982 3.30025 3.37761 3.40324 3.83727 4.05530 4.34374 4.69789 4.97448 4.99055 5.14860 5.25910 5.35380 5.43821 5.72903 5.76470 5.86340 6.03428 6.04837 6.12390 6.33932 6.46262 6.50933 6.61048 6.68238 6.76402 6.94555 7.20493 7.41333 7.70730 7.89100 7.94523 8.42837 8.55400 8.89626 9.47985 10.97230 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043986 B = 0.003398 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.414508 B = 8237.388863 C = 8514.219694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.028 3.972 3 C -0.148 4.148 4 C -0.514 4.514 5 H 0.077 0.923 6 C 0.075 3.925 7 N -0.891 5.891 8 Si 0.885 3.115 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.249 1.249 12 C 0.141 3.859 13 N -0.721 5.721 14 C 0.509 3.491 15 O -0.547 6.547 16 C -0.137 4.137 17 C -0.008 4.008 18 C 0.180 3.820 19 N -0.274 5.274 20 N -0.055 5.055 21 N -0.233 5.233 22 H 0.473 0.527 23 N -0.299 5.299 24 H 0.021 0.979 25 H 0.056 0.944 26 H 0.047 0.953 27 H 0.053 0.947 28 H 0.041 0.959 29 H 0.029 0.971 30 H 0.265 0.735 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.397 0.603 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.849 5.577 21.505 22.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.027 3.973 3 C -0.205 4.205 4 C -0.552 4.552 5 H 0.095 0.905 6 C -0.127 4.127 7 N -0.528 5.528 8 Si 0.718 3.282 9 H -0.213 1.213 10 H -0.234 1.234 11 H -0.175 1.175 12 C 0.019 3.981 13 N -0.372 5.372 14 C 0.295 3.705 15 O -0.425 6.425 16 C -0.179 4.179 17 C -0.049 4.049 18 C -0.102 4.102 19 N -0.147 5.147 20 N -0.050 5.050 21 N -0.078 5.078 22 H 0.327 0.673 23 N -0.151 5.151 24 H 0.040 0.960 25 H 0.075 0.925 26 H 0.066 0.934 27 H 0.073 0.927 28 H 0.059 0.941 29 H 0.048 0.952 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.115 0.885 35 H 0.113 0.887 36 H 0.122 0.878 37 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.293 5.245 21.812 23.049 hybrid contribution -1.156 1.141 -0.282 1.648 sum -6.449 6.386 21.530 23.365 Atomic orbital electron populations 1.22295 0.97867 0.99829 0.99955 1.18725 0.92494 0.92267 0.93837 1.22361 1.01249 0.98305 0.98570 1.20726 1.34082 1.12345 0.88003 0.90516 1.24974 0.94671 0.97295 0.95792 1.69951 1.48179 1.35915 0.98735 0.87296 0.79342 0.85567 0.75980 1.21342 1.23416 1.17535 1.21523 0.98678 0.95828 0.82075 1.46308 1.52837 1.31875 1.06194 1.20297 0.80750 0.84809 0.84674 1.90705 1.38567 1.26352 1.86921 1.21611 1.02879 1.01104 0.92270 1.19718 1.02749 0.98306 0.84131 1.25828 0.88664 0.95671 1.00086 1.75931 1.23186 1.13098 1.02460 1.78966 0.94013 1.15458 1.16600 1.47816 1.18221 1.21167 1.20645 0.67278 1.74761 1.22504 1.16779 1.01014 0.95956 0.92544 0.93389 0.92740 0.94066 0.95156 0.92544 0.91885 0.91807 0.76858 0.88465 0.88678 0.87772 0.87416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.81 7.53 37.16 0.28 -2.53 16 2 C 0.03 0.59 0.50 -155.66 -0.08 0.52 16 3 C -0.15 -2.93 7.52 37.16 0.28 -2.65 16 4 C -0.51 -13.63 8.62 -34.44 -0.30 -13.93 16 5 H 0.08 2.24 7.99 -52.49 -0.42 1.82 16 6 C 0.08 2.08 5.32 -17.82 -0.09 1.98 16 7 N -0.89 -26.49 13.96 55.43 0.77 -25.72 16 8 Si 0.89 20.87 22.79 -169.99 -3.87 17.00 16 9 H -0.29 -6.73 7.10 56.52 0.40 -6.32 16 10 H -0.31 -7.39 7.11 56.52 0.40 -6.99 16 11 H -0.25 -5.32 4.65 56.52 0.26 -5.05 16 12 C 0.14 2.73 4.49 -4.04 -0.02 2.71 16 13 N -0.72 -11.04 5.00 -60.29 -0.30 -11.34 16 14 C 0.51 7.47 7.83 -10.99 -0.09 7.38 16 15 O -0.55 -10.03 15.98 5.56 0.09 -9.94 16 16 C -0.14 -1.42 5.68 -27.88 -0.16 -1.58 16 17 C -0.01 -0.09 5.13 -27.88 -0.14 -0.23 16 18 C 0.18 1.91 7.62 -156.63 -1.19 0.72 16 19 N -0.27 -3.19 12.50 32.44 0.41 -2.78 16 20 N -0.05 -0.54 13.48 60.35 0.81 0.27 16 21 N -0.23 -1.65 7.91 60.34 0.48 -1.17 16 22 H 0.47 1.07 8.96 -340.53 -3.05 -1.99 16 23 N -0.30 -2.83 12.36 32.46 0.40 -2.43 16 24 H 0.02 0.36 7.13 -51.93 -0.37 -0.01 16 25 H 0.06 1.20 4.30 -51.93 -0.22 0.98 16 26 H 0.05 0.94 8.12 -51.93 -0.42 0.52 16 27 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.04 0.87 2.25 -51.93 -0.12 0.75 16 29 H 0.03 0.49 6.86 -51.93 -0.36 0.13 16 30 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 33 H 0.40 5.22 6.26 -40.82 -0.26 4.97 16 34 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 0.85 8.14 -51.92 -0.42 0.42 16 36 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 37 H 0.11 1.15 8.10 -51.93 -0.42 0.73 16 LS Contribution 300.19 15.07 4.52 4.52 Total: -1.00 -32.96 300.19 -5.65 -38.61 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -7.44 Total: 0.58 kcal Atomic # 6 Polarization: -6.10 SS G_CDS: -1.51 Total: -7.61 kcal Atomic # 7 Polarization: -45.73 SS G_CDS: 2.57 Total: -43.16 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.09 Total: -9.94 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -3.87 Total: 17.00 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -32.96 -5.65 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.560 kcal (2) G-P(sol) polarization free energy of solvation -32.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds