Wall clock time and date at job start Mon Mar 30 2020 00:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47196 * 2 1 4 4 C 1.50706 * 109.46968 * 240.00013 * 2 1 3 5 5 H 1.08002 * 119.99348 * 241.34674 * 4 2 1 6 6 C 1.37868 * 120.00017 * 61.34973 * 4 2 1 7 7 N 1.31517 * 120.00260 * 193.97657 * 6 4 2 8 8 Si 1.86800 * 120.00214 * 13.97566 * 6 4 2 9 9 H 1.48500 * 109.47307 * 84.54569 * 8 6 4 10 10 H 1.48506 * 109.47196 * 204.55046 * 8 6 4 11 11 H 1.48504 * 109.47035 * 324.54693 * 8 6 4 12 12 C 1.53002 * 109.47028 * 120.00081 * 2 1 3 13 13 N 1.46500 * 109.47038 * 299.99867 * 12 2 1 14 14 C 1.34775 * 119.99838 * 180.02562 * 13 12 2 15 15 O 1.21283 * 119.99876 * 359.72472 * 14 13 12 16 16 C 1.50696 * 120.00059 * 180.02562 * 14 13 12 17 17 C 1.53000 * 109.47401 * 179.72249 * 16 14 13 18 18 C 1.50704 * 109.46959 * 179.97438 * 17 16 14 19 19 N 1.33313 * 126.54794 * 269.68389 * 18 17 16 20 20 N 1.29000 * 107.34917 * 179.83741 * 19 18 17 21 21 N 1.28778 * 108.73068 * 0.43912 * 20 19 18 22 22 H 0.96997 * 125.45094 * 179.72762 * 21 20 19 23 23 N 1.28884 * 109.09588 * 359.72340 * 21 20 19 24 24 H 1.08994 * 109.46985 * 309.36558 * 1 2 3 25 25 H 1.08996 * 109.46856 * 69.36746 * 1 2 3 26 26 H 1.08993 * 109.47116 * 189.36548 * 1 2 3 27 27 H 1.08998 * 109.47018 * 180.02562 * 3 2 1 28 28 H 1.08996 * 109.47355 * 300.00078 * 3 2 1 29 29 H 1.08995 * 109.47254 * 59.99913 * 3 2 1 30 30 H 0.96998 * 120.00066 * 180.02562 * 7 6 4 31 31 H 1.08998 * 109.46908 * 179.97438 * 12 2 1 32 32 H 1.09004 * 109.46723 * 60.00019 * 12 2 1 33 33 H 0.97000 * 119.99916 * 359.97438 * 13 12 2 34 34 H 1.09005 * 109.47135 * 299.72537 * 16 14 13 35 35 H 1.09007 * 109.47349 * 59.72029 * 16 14 13 36 36 H 1.08998 * 109.47411 * 299.99879 * 17 16 14 37 37 H 1.09002 * 109.46673 * 60.00209 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6352 -1.6011 -1.1315 6 6 1.7224 -0.2234 -2.4825 7 7 1.9158 -0.9726 -3.5460 8 14 1.0277 1.5006 -2.6684 9 1 2.1418 2.4816 -2.7083 10 1 0.2470 1.5865 -3.9288 11 1 0.1418 1.8043 -1.5159 12 6 2.0400 -0.7213 1.2493 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4908 3.6695 15 8 2.5712 -1.4796 3.7807 16 6 1.3749 0.2192 4.8999 17 6 1.8798 -0.5056 6.1492 18 6 1.3775 0.2049 7.3796 19 7 1.9923 1.1904 8.0339 20 7 1.2363 1.5250 9.0241 21 7 0.1857 0.7803 9.0124 22 1 -0.5419 0.8238 9.6524 23 7 0.2558 -0.0320 8.0142 24 1 -0.3633 0.6518 0.7945 25 1 -0.3633 0.3621 -0.9617 26 1 -0.3633 -1.0139 0.1672 27 1 3.1300 1.4424 -0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9563 0.8899 30 1 1.6980 -0.6297 -4.4269 31 1 3.1300 -0.7217 1.2490 32 1 1.6766 -1.7490 1.2492 33 1 0.9944 0.7582 2.3564 34 1 1.7415 1.2457 4.9024 35 1 0.2849 0.2228 4.8976 36 1 1.5132 -1.5321 6.1468 37 1 2.9698 -0.5091 6.1516 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141962603.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:26:04 Heat of formation + Delta-G solvation = 62.271152 kcal Electronic energy + Delta-G solvation = -19892.716655 eV Core-core repulsion = 16707.465663 eV Total energy + Delta-G solvation = -3185.250992 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 267.144 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.46572 -40.80148 -38.44283 -35.95003 -34.95184 -34.93569 -33.44820 -32.44365 -28.20472 -27.94955 -27.07432 -25.87743 -25.49545 -22.89894 -21.30103 -20.87727 -20.08351 -18.49527 -18.06230 -17.84290 -16.98196 -16.73229 -16.54896 -15.73286 -15.27866 -15.04645 -14.80062 -14.52791 -14.13252 -14.09829 -13.95060 -13.72434 -13.42137 -13.14399 -12.85317 -12.37253 -12.31020 -12.21001 -12.11825 -11.94823 -11.92700 -11.72927 -11.36642 -11.07052 -10.79238 -10.59497 -10.36003 -9.92624 -8.28650 -6.30240 0.14683 1.01487 1.38248 1.39524 1.51918 1.52557 1.75422 2.33327 2.36489 2.94283 3.07958 3.31361 3.78694 4.06505 4.16210 4.21155 4.37816 4.44182 4.46377 4.58266 4.67427 4.79856 4.88105 4.90090 4.95094 4.99589 5.08165 5.10541 5.23008 5.47881 5.59883 5.67855 5.75517 5.83205 6.32685 6.69894 6.75893 7.22280 7.34716 7.38446 8.88734 Molecular weight = 267.14amu Principal moments of inertia in cm(-1) A = 0.043986 B = 0.003398 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 636.414508 B = 8237.388863 C = 8514.219694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.027 3.973 3 C -0.148 4.148 4 C -0.518 4.518 5 H 0.027 0.973 6 C 0.015 3.985 7 N -0.948 5.948 8 Si 0.945 3.055 9 H -0.283 1.283 10 H -0.317 1.317 11 H -0.201 1.201 12 C 0.157 3.843 13 N -0.712 5.712 14 C 0.510 3.490 15 O -0.588 6.588 16 C -0.121 4.121 17 C -0.005 4.005 18 C 0.176 3.824 19 N -0.301 5.301 20 N -0.062 5.062 21 N -0.205 5.205 22 H 0.492 0.508 23 N -0.301 5.301 24 H 0.068 0.932 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.413 0.587 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.101 0.899 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.936 8.298 24.085 26.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.025 3.975 3 C -0.204 4.204 4 C -0.557 4.557 5 H 0.045 0.955 6 C -0.182 4.182 7 N -0.588 5.588 8 Si 0.774 3.226 9 H -0.210 1.210 10 H -0.247 1.247 11 H -0.125 1.125 12 C 0.032 3.968 13 N -0.364 5.364 14 C 0.298 3.702 15 O -0.469 6.469 16 C -0.162 4.162 17 C -0.046 4.046 18 C -0.107 4.107 19 N -0.173 5.173 20 N -0.058 5.058 21 N -0.056 5.056 22 H 0.351 0.649 23 N -0.154 5.154 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.059 0.941 27 H 0.065 0.935 28 H 0.052 0.948 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.250 0.750 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.119 0.881 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.408 8.001 24.459 26.780 hybrid contribution -0.471 0.145 -0.980 1.097 sum -7.879 8.146 23.479 26.071 Atomic orbital electron populations 1.22214 0.96000 1.00690 1.00903 1.18663 0.93828 0.93101 0.91862 1.22298 1.00986 0.96815 1.00344 1.21080 1.32806 1.11071 0.90701 0.95481 1.25880 0.95435 1.01662 0.95225 1.70120 1.50868 1.38359 0.99426 0.86333 0.79408 0.79839 0.76974 1.21008 1.24661 1.12504 1.21007 0.97355 0.95004 0.83396 1.46060 1.53091 1.32145 1.05131 1.21047 0.79581 0.84174 0.85400 1.90700 1.40340 1.28385 1.87471 1.21548 1.04160 1.01178 0.89352 1.19623 1.02353 0.98256 0.84384 1.25731 0.88955 0.95735 1.00278 1.75920 1.24148 1.13996 1.03273 1.78918 0.94579 1.15884 1.16380 1.47871 1.18000 1.19620 1.20065 0.64930 1.74736 1.22177 1.17038 1.01417 0.91288 0.93809 0.94056 0.93545 0.94837 0.90483 0.92722 0.93969 0.94097 0.74988 0.86413 0.86202 0.88054 0.88202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.12 7.53 71.98 0.54 -4.58 16 2 C 0.03 1.09 0.50 -52.92 -0.03 1.07 16 3 C -0.15 -5.33 7.52 71.98 0.54 -4.78 16 4 C -0.52 -28.35 8.62 25.60 0.22 -28.13 16 5 H 0.03 1.69 7.99 -2.91 -0.02 1.66 16 6 C 0.02 0.85 5.32 84.65 0.45 1.30 16 7 N -0.95 -58.83 13.96 21.44 0.30 -58.53 16 8 Si 0.95 42.28 22.79 68.60 1.56 43.84 16 9 H -0.28 -12.44 7.10 99.48 0.71 -11.73 16 10 H -0.32 -14.71 7.11 99.48 0.71 -14.00 16 11 H -0.20 -7.49 4.65 99.48 0.46 -7.03 16 12 C 0.16 5.98 4.49 86.38 0.39 6.37 16 13 N -0.71 -19.74 5.00 -463.06 -2.32 -22.05 16 14 C 0.51 13.81 7.83 87.66 0.69 14.50 16 15 O -0.59 -21.29 15.98 -3.04 -0.05 -21.34 16 16 C -0.12 -2.08 5.68 29.85 0.17 -1.91 16 17 C -0.01 -0.10 5.13 29.85 0.15 0.05 16 18 C 0.18 3.30 7.62 138.55 1.06 4.35 16 19 N -0.30 -6.37 12.50 -51.26 -0.64 -7.02 16 20 N -0.06 -1.08 13.48 37.02 0.50 -0.58 16 21 N -0.20 -2.31 7.91 37.00 0.29 -2.02 16 22 H 0.49 0.71 8.96 -347.67 -3.12 -2.41 16 23 N -0.30 -4.84 12.36 -51.20 -0.63 -5.47 16 24 H 0.07 1.87 7.13 -2.39 -0.02 1.85 16 25 H 0.04 1.70 4.30 -2.39 -0.01 1.69 16 26 H 0.04 1.54 8.12 -2.39 -0.02 1.52 16 27 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.03 1.27 2.25 -2.39 -0.01 1.27 16 29 H 0.08 2.06 6.86 -2.39 -0.02 2.04 16 30 H 0.26 15.43 8.31 -92.71 -0.77 14.66 16 31 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.41 8.75 6.26 -92.71 -0.58 8.17 16 34 H 0.12 1.64 8.14 -2.38 -0.02 1.62 16 35 H 0.12 1.55 8.14 -2.38 -0.02 1.53 16 36 H 0.10 1.94 8.10 -2.39 -0.02 1.92 16 37 H 0.10 2.02 8.10 -2.39 -0.02 2.00 16 Total: -1.00 -75.35 300.19 0.38 -74.98 By element: Atomic # 1 Polarization: 12.76 SS G_CDS: -2.82 Total: 9.94 kcal Atomic # 6 Polarization: -15.94 SS G_CDS: 4.18 Total: -11.76 kcal Atomic # 7 Polarization: -93.17 SS G_CDS: -2.50 Total: -95.67 kcal Atomic # 8 Polarization: -21.29 SS G_CDS: -0.05 Total: -21.34 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 1.56 Total: 43.84 kcal Total: -75.35 0.38 -74.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141962603.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.246 kcal (2) G-P(sol) polarization free energy of solvation -75.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.975 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds