Wall clock time and date at job start Mon Mar 30 2020 01:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 120.00305 * 2 1 4 4 H 1.48497 * 109.46696 * 274.01250 * 3 2 1 5 5 H 1.48499 * 109.46779 * 34.01002 * 3 2 1 6 6 H 1.48496 * 109.46916 * 154.01158 * 3 2 1 7 7 C 1.38950 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 347.09373 * 7 2 1 9 9 N 1.37097 * 120.00068 * 167.08925 * 7 2 1 10 10 C 1.34774 * 120.00171 * 311.62132 * 9 7 2 11 11 O 1.21293 * 119.99943 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99872 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.46961 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46977 * 54.99927 * 13 12 10 15 15 C 1.53006 * 109.46790 * 294.99775 * 13 12 10 16 16 C 1.53001 * 109.46487 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47112 * 60.00541 * 16 15 13 18 18 C 1.53002 * 109.46661 * 299.99110 * 17 16 15 19 19 C 1.52994 * 109.46950 * 174.99810 * 13 12 10 20 20 H 1.09003 * 109.47671 * 60.00184 * 19 13 12 21 21 O 1.42901 * 109.47513 * 299.99751 * 19 13 12 22 22 C 1.46506 * 119.99892 * 131.61473 * 9 7 2 23 23 C 1.52999 * 117.49903 * 11.42238 * 22 9 7 24 24 C 1.53001 * 117.49767 * 302.76402 * 22 9 7 25 25 H 0.96998 * 119.99689 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47501 * 59.99805 * 12 10 9 27 27 H 1.09001 * 109.47092 * 299.98945 * 12 10 9 28 28 H 1.09002 * 109.47059 * 59.99999 * 15 13 12 29 29 H 1.08997 * 109.46780 * 299.99606 * 15 13 12 30 30 H 1.08994 * 109.47603 * 299.99846 * 16 15 13 31 31 H 1.09000 * 109.46493 * 179.97438 * 16 15 13 32 32 H 1.08994 * 109.47455 * 59.99214 * 17 16 15 33 33 H 1.09002 * 109.46610 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46718 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47681 * 300.00398 * 18 17 16 36 36 H 0.96693 * 114.00657 * 180.02562 * 21 19 13 37 37 H 1.08997 * 115.54842 * 157.09656 * 22 9 7 38 38 H 1.08999 * 117.49711 * 0.02562 * 23 22 9 39 39 H 1.08993 * 117.50099 * 145.02036 * 23 22 9 40 40 H 1.09003 * 117.50148 * 214.97656 * 24 22 9 41 41 H 1.08997 * 117.50087 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4109 2.0953 -1.3966 5 1 1.4907 2.6267 0.7831 6 1 3.5856 1.4170 0.6135 7 6 2.0088 -1.2034 -0.0005 8 1 1.4893 -2.1270 0.2079 9 7 3.3538 -1.2183 -0.2658 10 6 3.8377 -0.5524 -1.3330 11 8 3.0831 0.0598 -2.0590 12 6 5.3162 -0.5684 -1.6242 13 6 5.5974 0.2575 -2.8811 14 1 5.1900 1.2607 -2.7553 15 6 4.9396 -0.4124 -4.0892 16 6 5.2202 0.4139 -5.3460 17 6 6.7310 0.5020 -5.5715 18 6 7.3887 1.1720 -4.3634 19 6 7.1081 0.3451 -3.1063 20 1 7.5156 -0.6580 -3.2321 21 8 7.7225 0.9708 -1.9780 22 6 4.2652 -1.9581 0.6108 23 6 3.6431 -2.9054 1.6387 24 6 4.2737 -1.5875 2.0953 25 1 -0.4849 0.8401 0.0004 26 1 5.6440 -1.5956 -1.7840 27 1 5.8574 -0.1414 -0.7799 28 1 3.8632 -0.4748 -3.9287 29 1 5.3471 -1.4155 -4.2150 30 1 4.8125 1.4169 -5.2200 31 1 4.7520 -0.0636 -6.2067 32 1 7.1387 -0.5009 -5.6975 33 1 6.9309 1.0904 -6.4671 34 1 8.4649 1.2352 -4.5243 35 1 6.9810 2.1749 -4.2373 36 1 8.6824 1.0603 -2.0521 37 1 5.2123 -2.2554 0.1609 38 1 2.5558 -2.9785 1.6624 39 1 4.1812 -3.8258 1.8653 40 1 5.2265 -1.6414 2.6220 41 1 3.6011 -0.7936 2.4197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142370680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:32 Heat of formation + Delta-G solvation = -67.434324 kcal Electronic energy + Delta-G solvation = -21819.015400 eV Core-core repulsion = 18699.387549 eV Total energy + Delta-G solvation = -3119.627851 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.66326 -38.44238 -36.36709 -35.38874 -32.99070 -32.17352 -31.31407 -29.52835 -27.15396 -24.40118 -22.50529 -21.89289 -21.56948 -20.98229 -19.73263 -18.94384 -17.16579 -16.80590 -16.15770 -15.39179 -15.08882 -14.68024 -14.22301 -14.12413 -13.73152 -13.56068 -13.24700 -12.82335 -12.75908 -12.67238 -12.26454 -11.81051 -11.51386 -11.40838 -11.25871 -10.97817 -10.75733 -10.65681 -10.49478 -10.30297 -10.21334 -9.98380 -9.95143 -9.88843 -9.66620 -9.58991 -8.57055 -8.34140 -7.32411 -6.13898 -3.98327 3.35710 3.52763 3.67525 3.83137 4.26005 4.38753 4.53863 4.71460 4.76508 4.81922 5.03957 5.20860 5.26370 5.33376 5.44756 5.50040 5.53702 5.58894 5.63435 5.69082 5.76578 5.82001 5.88420 5.97261 6.08094 6.11712 6.17069 6.24358 6.28656 6.38773 6.43347 6.51330 6.74842 6.77400 6.87206 6.93083 7.71472 7.90418 8.09963 8.83268 8.99707 9.47163 9.88910 10.91516 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.007173 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.278666 B = 3902.674665 C = 4459.500168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.090 3.910 3 Si 0.907 3.093 4 H -0.257 1.257 5 H -0.309 1.309 6 H -0.277 1.277 7 C -0.341 4.341 8 H 0.093 0.907 9 N -0.444 5.444 10 C 0.464 3.536 11 O -0.541 6.541 12 C -0.130 4.130 13 C -0.060 4.060 14 H 0.080 0.920 15 C -0.118 4.118 16 C -0.120 4.120 17 C -0.116 4.116 18 C -0.150 4.150 19 C 0.108 3.892 20 H 0.053 0.947 21 O -0.564 6.564 22 C 0.065 3.935 23 C -0.177 4.177 24 C -0.197 4.197 25 H 0.271 0.729 26 H 0.077 0.923 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.053 0.947 30 H 0.063 0.937 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.069 0.931 36 H 0.370 0.630 37 H 0.111 0.889 38 H 0.108 0.892 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.386 -1.317 -5.439 17.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.118 4.118 3 Si 0.737 3.263 4 H -0.183 1.183 5 H -0.238 1.238 6 H -0.202 1.202 7 C -0.467 4.467 8 H 0.111 0.889 9 N -0.165 5.165 10 C 0.254 3.746 11 O -0.423 6.423 12 C -0.170 4.170 13 C -0.079 4.079 14 H 0.099 0.901 15 C -0.156 4.156 16 C -0.158 4.158 17 C -0.153 4.153 18 C -0.187 4.187 19 C 0.050 3.950 20 H 0.071 0.929 21 O -0.369 6.369 22 C -0.041 4.041 23 C -0.215 4.215 24 C -0.235 4.235 25 H 0.081 0.919 26 H 0.095 0.905 27 H 0.106 0.894 28 H 0.116 0.884 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.216 0.784 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.103 0.897 40 H 0.103 0.897 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 15.176 -0.908 -5.619 16.208 hybrid contribution 1.030 0.771 -0.011 1.287 sum 16.206 -0.137 -5.630 17.157 Atomic orbital electron populations 1.69706 1.06659 1.27976 1.46610 1.25349 0.94942 0.99292 0.92202 0.86373 0.79132 0.82239 0.78507 1.18283 1.23824 1.20204 1.18713 0.80588 0.95053 1.52309 0.88936 1.43184 1.06424 1.45884 1.20975 1.20411 0.89730 0.83151 0.81316 1.90492 1.59451 1.44122 1.48208 1.21642 0.95507 1.00755 0.99125 1.20839 0.91472 1.00967 0.94607 0.90144 1.21719 1.03794 0.97492 0.92551 1.21558 0.94999 1.01026 0.98196 1.21497 0.96343 1.00436 0.97064 1.22259 1.00092 1.00678 0.95714 1.21926 0.94192 0.94347 0.84555 0.92948 1.86596 1.24505 1.83145 1.42613 1.21849 0.95008 1.00178 0.87070 1.23124 1.02150 0.92751 1.03462 1.23224 1.01904 0.99738 0.98669 0.91925 0.90464 0.89424 0.88354 0.92800 0.91870 0.92060 0.92119 0.92188 0.92218 0.91189 0.78350 0.87156 0.87350 0.89669 0.89684 0.88508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -27.10 13.96 55.50 0.77 -26.32 16 2 C 0.09 2.70 5.01 -17.47 -0.09 2.61 16 3 Si 0.91 24.92 24.72 -169.99 -4.20 20.72 16 4 H -0.26 -7.37 6.47 56.52 0.37 -7.00 16 5 H -0.31 -8.35 7.11 56.52 0.40 -7.94 16 6 H -0.28 -7.41 7.10 56.52 0.40 -7.01 16 7 C -0.34 -9.66 8.49 -14.93 -0.13 -9.78 16 8 H 0.09 2.76 7.07 -52.49 -0.37 2.39 16 9 N -0.44 -10.83 2.44 -107.73 -0.26 -11.09 16 10 C 0.46 11.06 5.53 -10.99 -0.06 11.00 16 11 O -0.54 -14.69 9.91 5.55 0.05 -14.64 16 12 C -0.13 -2.40 3.61 -27.88 -0.10 -2.50 16 13 C -0.06 -1.02 1.58 -90.62 -0.14 -1.16 16 14 H 0.08 1.60 7.95 -51.93 -0.41 1.19 16 15 C -0.12 -1.91 4.94 -26.73 -0.13 -2.04 16 16 C -0.12 -1.62 5.92 -26.73 -0.16 -1.78 16 17 C -0.12 -1.26 5.92 -26.73 -0.16 -1.42 16 18 C -0.15 -1.68 5.55 -26.70 -0.15 -1.83 16 19 C 0.11 1.42 2.90 -26.71 -0.08 1.34 16 20 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 21 O -0.56 -7.44 12.56 -35.23 -0.44 -7.89 16 22 C 0.06 1.26 6.05 -67.93 -0.41 0.85 16 23 C -0.18 -3.15 9.85 -26.69 -0.26 -3.41 16 24 C -0.20 -3.57 10.22 -26.69 -0.27 -3.84 16 25 H 0.27 7.95 8.31 -40.82 -0.34 7.61 16 26 H 0.08 1.23 7.58 -51.93 -0.39 0.84 16 27 H 0.09 1.62 7.50 -51.93 -0.39 1.23 16 28 H 0.10 1.96 5.95 -51.93 -0.31 1.65 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 32 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.37 3.03 9.08 45.56 0.41 3.45 16 37 H 0.11 1.80 6.72 -51.93 -0.35 1.45 16 38 H 0.11 2.20 6.57 -51.93 -0.34 1.86 16 39 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.27 8.14 -51.93 -0.42 0.84 16 41 H 0.10 2.01 8.14 -51.93 -0.42 1.59 16 LS Contribution 316.15 15.07 4.76 4.76 Total: -1.00 -33.77 316.15 -7.43 -41.20 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -5.98 Total: 5.22 kcal Atomic # 6 Polarization: -9.82 SS G_CDS: -2.14 Total: -11.96 kcal Atomic # 7 Polarization: -37.92 SS G_CDS: 0.51 Total: -37.41 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.39 Total: -22.53 kcal Atomic # 14 Polarization: 24.92 SS G_CDS: -4.20 Total: 20.72 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -33.77 -7.43 -41.20 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142370680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.239 kcal (2) G-P(sol) polarization free energy of solvation -33.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds