Wall clock time and date at job start Mon Mar 30 2020 01:31:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31415 * 1 3 3 Si 1.86803 * 120.00305 * 2 1 4 4 H 1.48497 * 109.46696 * 274.01250 * 3 2 1 5 5 H 1.48499 * 109.46779 * 34.01002 * 3 2 1 6 6 H 1.48496 * 109.46916 * 154.01158 * 3 2 1 7 7 C 1.38950 * 119.99759 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00379 * 347.09373 * 7 2 1 9 9 N 1.37097 * 120.00068 * 167.08925 * 7 2 1 10 10 C 1.34774 * 120.00171 * 311.62132 * 9 7 2 11 11 O 1.21293 * 119.99943 * 359.97438 * 10 9 7 12 12 C 1.50701 * 119.99872 * 179.97438 * 10 9 7 13 13 C 1.53006 * 109.46961 * 179.97438 * 12 10 9 14 14 H 1.08999 * 109.46977 * 54.99927 * 13 12 10 15 15 C 1.53006 * 109.46790 * 294.99775 * 13 12 10 16 16 C 1.53001 * 109.46487 * 179.97438 * 15 13 12 17 17 C 1.53005 * 109.47112 * 60.00541 * 16 15 13 18 18 C 1.53002 * 109.46661 * 299.99110 * 17 16 15 19 19 C 1.52994 * 109.46950 * 174.99810 * 13 12 10 20 20 H 1.09003 * 109.47671 * 60.00184 * 19 13 12 21 21 O 1.42901 * 109.47513 * 299.99751 * 19 13 12 22 22 C 1.46506 * 119.99892 * 131.61473 * 9 7 2 23 23 C 1.52999 * 117.49903 * 11.42238 * 22 9 7 24 24 C 1.53001 * 117.49767 * 302.76402 * 22 9 7 25 25 H 0.96998 * 119.99689 * 359.97438 * 1 2 3 26 26 H 1.08999 * 109.47501 * 59.99805 * 12 10 9 27 27 H 1.09001 * 109.47092 * 299.98945 * 12 10 9 28 28 H 1.09002 * 109.47059 * 59.99999 * 15 13 12 29 29 H 1.08997 * 109.46780 * 299.99606 * 15 13 12 30 30 H 1.08994 * 109.47603 * 299.99846 * 16 15 13 31 31 H 1.09000 * 109.46493 * 179.97438 * 16 15 13 32 32 H 1.08994 * 109.47455 * 59.99214 * 17 16 15 33 33 H 1.09002 * 109.46610 * 179.97438 * 17 16 15 34 34 H 1.09002 * 109.46718 * 180.02562 * 18 17 16 35 35 H 1.08999 * 109.47681 * 300.00398 * 18 17 16 36 36 H 0.96693 * 114.00657 * 180.02562 * 21 19 13 37 37 H 1.08997 * 115.54842 * 157.09656 * 22 9 7 38 38 H 1.08999 * 117.49711 * 0.02562 * 23 22 9 39 39 H 1.08993 * 117.50099 * 145.02036 * 23 22 9 40 40 H 1.09003 * 117.50148 * 214.97656 * 24 22 9 41 41 H 1.08997 * 117.50087 * 0.02562 * 24 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4109 2.0953 -1.3966 5 1 1.4907 2.6267 0.7831 6 1 3.5856 1.4170 0.6135 7 6 2.0088 -1.2034 -0.0005 8 1 1.4893 -2.1270 0.2079 9 7 3.3538 -1.2183 -0.2658 10 6 3.8377 -0.5524 -1.3330 11 8 3.0831 0.0598 -2.0590 12 6 5.3162 -0.5684 -1.6242 13 6 5.5974 0.2575 -2.8811 14 1 5.1900 1.2607 -2.7553 15 6 4.9396 -0.4124 -4.0892 16 6 5.2202 0.4139 -5.3460 17 6 6.7310 0.5020 -5.5715 18 6 7.3887 1.1720 -4.3634 19 6 7.1081 0.3451 -3.1063 20 1 7.5156 -0.6580 -3.2321 21 8 7.7225 0.9708 -1.9780 22 6 4.2652 -1.9581 0.6108 23 6 3.6431 -2.9054 1.6387 24 6 4.2737 -1.5875 2.0953 25 1 -0.4849 0.8401 0.0004 26 1 5.6440 -1.5956 -1.7840 27 1 5.8574 -0.1414 -0.7799 28 1 3.8632 -0.4748 -3.9287 29 1 5.3471 -1.4155 -4.2150 30 1 4.8125 1.4169 -5.2200 31 1 4.7520 -0.0636 -6.2067 32 1 7.1387 -0.5009 -5.6975 33 1 6.9309 1.0904 -6.4671 34 1 8.4649 1.2352 -4.5243 35 1 6.9810 2.1749 -4.2373 36 1 8.6824 1.0603 -2.0521 37 1 5.2123 -2.2554 0.1609 38 1 2.5558 -2.9785 1.6624 39 1 4.1812 -3.8258 1.8653 40 1 5.2265 -1.6414 2.6220 41 1 3.6011 -0.7936 2.4197 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142370680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:31:31 Heat of formation + Delta-G solvation = -91.822012 kcal Electronic energy + Delta-G solvation = -21820.072930 eV Core-core repulsion = 18699.387549 eV Total energy + Delta-G solvation = -3120.685381 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.23728 -39.78596 -38.01017 -36.41032 -34.97677 -33.66397 -33.21289 -30.57718 -28.69694 -26.24389 -23.65020 -23.35510 -22.99143 -22.37903 -20.97058 -20.66846 -18.72455 -18.13948 -17.85097 -17.31908 -16.38432 -16.08149 -15.89535 -15.35118 -15.17366 -15.01376 -14.79357 -14.57194 -14.31943 -13.94835 -13.66154 -13.45168 -13.00339 -12.89346 -12.71750 -12.36982 -12.24392 -12.20177 -12.05027 -11.89829 -11.62946 -11.58015 -11.34036 -11.25822 -11.04875 -10.85889 -10.65169 -10.22161 -9.27201 -8.44123 -6.25644 1.15487 1.27864 1.40671 1.92629 2.33564 2.67167 2.93821 3.25813 3.33629 3.68778 3.74144 3.98440 4.09266 4.10342 4.20681 4.21734 4.30906 4.32741 4.42176 4.46941 4.48850 4.61805 4.70344 4.84630 4.89177 4.95516 5.03732 5.09161 5.20196 5.23059 5.27116 5.28894 5.32289 5.46995 5.52737 5.57663 5.70018 5.89404 6.76929 6.93420 7.03023 7.33608 7.90458 8.64719 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.020355 B = 0.007173 C = 0.006277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.278666 B = 3902.674665 C = 4459.500168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.043 3.957 3 Si 0.957 3.043 4 H -0.284 1.284 5 H -0.305 1.305 6 H -0.265 1.265 7 C -0.325 4.325 8 H 0.067 0.933 9 N -0.462 5.462 10 C 0.454 3.546 11 O -0.583 6.583 12 C -0.118 4.118 13 C -0.063 4.063 14 H 0.036 0.964 15 C -0.115 4.115 16 C -0.120 4.120 17 C -0.109 4.109 18 C -0.147 4.147 19 C 0.117 3.883 20 H 0.081 0.919 21 O -0.584 6.584 22 C 0.045 3.955 23 C -0.168 4.168 24 C -0.190 4.190 25 H 0.271 0.729 26 H 0.113 0.887 27 H 0.095 0.905 28 H 0.049 0.951 29 H 0.077 0.923 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.394 0.606 37 H 0.154 0.846 38 H 0.072 0.928 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.989 -2.564 -5.701 21.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.160 4.160 3 Si 0.787 3.213 4 H -0.211 1.211 5 H -0.234 1.234 6 H -0.190 1.190 7 C -0.453 4.453 8 H 0.085 0.915 9 N -0.184 5.184 10 C 0.246 3.754 11 O -0.467 6.467 12 C -0.157 4.157 13 C -0.082 4.082 14 H 0.055 0.945 15 C -0.153 4.153 16 C -0.158 4.158 17 C -0.146 4.146 18 C -0.184 4.184 19 C 0.059 3.941 20 H 0.098 0.902 21 O -0.393 6.393 22 C -0.059 4.059 23 C -0.206 4.206 24 C -0.228 4.228 25 H 0.080 0.920 26 H 0.131 0.869 27 H 0.113 0.887 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.244 0.756 37 H 0.171 0.829 38 H 0.091 0.909 39 H 0.149 0.851 40 H 0.148 0.852 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 19.826 -2.167 -5.849 20.784 hybrid contribution -0.393 1.067 0.051 1.138 sum 19.433 -1.100 -5.798 20.309 Atomic orbital electron populations 1.69783 1.07716 1.28363 1.49742 1.25915 0.95413 1.01635 0.93039 0.85579 0.78815 0.80055 0.76837 1.21069 1.23373 1.18994 1.18595 0.82967 0.93627 1.50110 0.91496 1.43418 1.05698 1.46794 1.22455 1.21490 0.92125 0.81458 0.80322 1.90479 1.61190 1.45615 1.49420 1.21642 0.90752 1.03245 1.00093 1.20844 0.94900 0.98252 0.94183 0.94522 1.21610 1.00763 0.99241 0.93685 1.21550 0.97726 0.99296 0.97226 1.21471 0.93571 1.01959 0.97634 1.22248 1.02091 0.99213 0.94891 1.21786 0.90969 0.96190 0.85189 0.90158 1.86532 1.26771 1.83286 1.42715 1.22276 0.95753 1.00695 0.87203 1.23153 1.00585 0.94557 1.02259 1.23278 1.03177 0.98705 0.97639 0.91968 0.86873 0.88702 0.93262 0.90469 0.94166 0.91168 0.90070 0.90503 0.88792 0.93237 0.75599 0.82856 0.90940 0.85125 0.85199 0.92002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.68 13.96 21.66 0.30 -59.38 16 2 C 0.04 2.68 5.01 84.93 0.43 3.10 16 3 Si 0.96 53.75 24.72 68.60 1.70 55.45 16 4 H -0.28 -16.99 6.47 99.48 0.64 -16.35 16 5 H -0.30 -16.58 7.11 99.48 0.71 -15.88 16 6 H -0.27 -14.12 7.10 99.48 0.71 -13.41 16 7 C -0.33 -19.09 8.49 84.04 0.71 -18.38 16 8 H 0.07 4.20 7.07 -2.91 -0.02 4.18 16 9 N -0.46 -22.51 2.44 -613.13 -1.49 -24.00 16 10 C 0.45 21.70 5.53 87.66 0.48 22.18 16 11 O -0.58 -32.95 9.91 -3.07 -0.03 -32.98 16 12 C -0.12 -4.07 3.61 29.85 0.11 -3.96 16 13 C -0.06 -2.05 1.58 -10.79 -0.02 -2.06 16 14 H 0.04 1.50 7.95 -2.39 -0.02 1.48 16 15 C -0.12 -3.65 4.94 30.60 0.15 -3.50 16 16 C -0.12 -3.13 5.92 30.60 0.18 -2.95 16 17 C -0.11 -1.99 5.92 30.60 0.18 -1.81 16 18 C -0.15 -2.77 5.55 30.61 0.17 -2.60 16 19 C 0.12 2.62 2.90 30.61 0.09 2.71 16 20 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 21 O -0.58 -13.22 12.56 -148.98 -1.87 -15.09 16 22 C 0.04 1.63 6.05 44.99 0.27 1.90 16 23 C -0.17 -5.58 9.85 30.62 0.30 -5.28 16 24 C -0.19 -6.36 10.22 30.62 0.31 -6.05 16 25 H 0.27 16.73 8.31 -92.71 -0.77 15.96 16 26 H 0.11 3.10 7.58 -2.39 -0.02 3.09 16 27 H 0.09 3.20 7.50 -2.39 -0.02 3.18 16 28 H 0.05 2.04 5.95 -2.39 -0.01 2.03 16 29 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 32 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.39 4.63 9.08 -74.06 -0.67 3.96 16 37 H 0.15 4.20 6.72 -2.39 -0.02 4.19 16 38 H 0.07 2.96 6.57 -2.39 -0.02 2.94 16 39 H 0.13 3.16 8.14 -2.39 -0.02 3.14 16 40 H 0.13 3.21 8.14 -2.39 -0.02 3.19 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -79.88 316.15 2.25 -77.63 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: 0.28 Total: 15.06 kcal Atomic # 6 Polarization: -20.06 SS G_CDS: 3.37 Total: -16.69 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -1.19 Total: -83.38 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -1.90 Total: -48.07 kcal Atomic # 14 Polarization: 53.75 SS G_CDS: 1.70 Total: 55.45 kcal Total: -79.88 2.25 -77.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142370680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.191 kcal (2) G-P(sol) polarization free energy of solvation -79.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds