Wall clock time and date at job start Mon Mar 30 2020 01:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99612 * 2 1 4 4 H 1.48494 * 109.47089 * 174.64075 * 3 2 1 5 5 H 1.48501 * 109.47247 * 294.63825 * 3 2 1 6 6 H 1.48500 * 109.47248 * 54.63583 * 3 2 1 7 7 C 1.37871 * 120.00390 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84974 * 164.56552 * 7 2 1 9 9 C 1.53235 * 108.53542 * 231.32471 * 8 7 2 10 10 C 1.52953 * 109.40415 * 305.37254 * 9 8 7 11 11 H 1.08994 * 109.35917 * 303.52528 * 10 9 8 12 12 N 1.46499 * 109.41050 * 183.70226 * 10 9 8 13 13 C 1.34782 * 119.99843 * 84.65199 * 12 10 9 14 14 O 1.21279 * 120.00014 * 359.97438 * 13 12 10 15 15 C 1.50697 * 119.99749 * 180.02562 * 13 12 10 16 16 C 1.53003 * 109.46744 * 179.97438 * 15 13 12 17 17 O 1.42899 * 112.91240 * 53.74608 * 16 15 13 18 18 C 1.53779 * 113.61347 * 282.49097 * 16 15 13 19 19 C 1.53773 * 87.08572 * 220.01991 * 18 16 15 20 20 C 1.53783 * 113.61394 * 184.99795 * 16 15 13 21 21 C 1.52959 * 109.81907 * 63.60013 * 10 9 8 22 22 C 1.51265 * 120.84952 * 344.54449 * 7 2 1 23 23 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.62389 * 351.04010 * 8 7 2 25 25 H 1.08998 * 109.62465 * 111.61467 * 8 7 2 26 26 H 1.08998 * 109.47705 * 185.39132 * 9 8 7 27 27 H 1.08998 * 109.47837 * 65.35088 * 9 8 7 28 28 H 0.97000 * 120.00242 * 264.64022 * 12 10 9 29 29 H 1.08992 * 109.47573 * 59.99909 * 15 13 12 30 30 H 1.09003 * 109.47193 * 299.99240 * 15 13 12 31 31 H 0.96697 * 113.99551 * 311.25778 * 17 16 15 32 32 H 1.08996 * 113.61652 * 334.57573 * 18 16 15 33 33 H 1.09005 * 113.61244 * 105.47483 * 18 16 15 34 34 H 1.08997 * 113.62047 * 270.88942 * 19 18 16 35 35 H 1.09004 * 113.61698 * 139.98113 * 19 18 16 36 36 H 1.08999 * 113.61439 * 254.52884 * 20 16 15 37 37 H 1.09003 * 113.61358 * 25.43037 * 20 16 15 38 38 H 1.09006 * 109.48286 * 56.37672 * 21 10 9 39 39 H 1.08993 * 109.48639 * 176.40545 * 21 10 9 40 40 H 1.08999 * 109.62903 * 8.95502 * 22 7 2 41 41 H 1.09001 * 109.62376 * 248.38908 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7037 1.3496 0.1308 5 1 1.9911 2.3384 -1.2726 6 1 1.7948 2.4517 1.1417 7 6 2.0046 -1.1940 0.0005 8 6 3.4766 -1.2399 -0.3451 9 6 3.6904 -2.3054 -1.4253 10 6 3.1137 -3.6384 -0.9454 11 1 3.5748 -3.9106 0.0039 12 7 3.3960 -4.6770 -1.9394 13 6 4.5793 -5.3220 -1.9226 14 8 5.4105 -5.0424 -1.0849 15 6 4.8698 -6.3900 -2.9453 16 6 6.2701 -6.9580 -2.7058 17 8 6.4635 -7.4148 -1.3657 18 6 7.3997 -6.0472 -3.2152 19 6 8.1068 -7.3251 -3.6962 20 6 6.7141 -7.9727 -3.7727 21 6 1.6010 -3.5116 -0.7581 22 6 1.3086 -2.4914 0.3472 23 1 -0.4850 0.8400 -0.0004 24 1 3.7947 -0.2677 -0.7217 25 1 4.0533 -1.4982 0.5431 26 1 4.7572 -2.4190 -1.6178 27 1 3.1858 -2.0000 -2.3420 28 1 2.7312 -4.9005 -2.6094 29 1 4.8190 -5.9591 -3.9451 30 1 4.1333 -7.1886 -2.8560 31 1 6.1861 -6.7809 -0.6903 32 1 7.0949 -5.3852 -4.0257 33 1 7.9328 -5.5263 -2.4198 34 1 8.7563 -7.7740 -2.9448 35 1 8.5919 -7.2170 -4.6664 36 1 6.6936 -9.0064 -3.4274 37 1 6.2218 -7.8373 -4.7357 38 1 1.1459 -3.1776 -1.6907 39 1 1.1869 -4.4801 -0.4780 40 1 0.2338 -2.3235 0.4154 41 1 1.6846 -2.8655 1.2994 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142622092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:18 Heat of formation + Delta-G solvation = -88.592259 kcal Electronic energy + Delta-G solvation = -20990.896735 eV Core-core repulsion = 17870.351407 eV Total energy + Delta-G solvation = -3120.545328 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.39913 -38.75105 -36.71304 -34.46700 -33.72456 -31.82132 -30.24534 -29.66105 -27.12736 -25.81862 -23.68354 -22.10225 -21.52090 -20.10992 -19.67963 -19.46447 -17.00469 -16.59458 -16.01301 -15.70563 -15.40907 -14.91860 -14.74615 -14.40893 -13.83594 -13.31000 -13.05572 -12.88659 -12.67497 -12.39575 -12.20796 -12.07450 -11.67800 -11.60552 -11.26382 -11.05703 -10.96281 -10.93061 -10.72425 -10.49968 -10.15370 -9.96553 -9.73570 -9.67113 -9.49124 -9.09258 -8.89475 -8.49277 -8.30992 -6.17405 -4.02346 2.78641 3.23697 3.34983 3.39075 3.45155 4.06645 4.36674 4.46770 4.56072 4.61244 4.75405 5.09281 5.14835 5.22286 5.36458 5.51564 5.56999 5.63118 5.70327 5.78735 5.85796 6.03338 6.15500 6.16964 6.26156 6.43647 6.45750 6.68338 6.73018 6.85914 6.93859 7.09409 7.19886 7.40840 7.61309 7.65972 7.70738 7.82299 7.86456 8.34693 8.47334 8.92187 9.51172 10.92358 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.004098 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.241950 B = 6830.477940 C = 7190.678236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.080 3.920 3 Si 0.879 3.121 4 H -0.261 1.261 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.494 4.494 8 C -0.013 4.013 9 C -0.111 4.111 10 C 0.152 3.848 11 H 0.078 0.922 12 N -0.720 5.720 13 C 0.511 3.489 14 O -0.548 6.548 15 C -0.166 4.166 16 C 0.131 3.869 17 O -0.551 6.551 18 C -0.161 4.161 19 C -0.135 4.135 20 C -0.129 4.129 21 C -0.113 4.113 22 C 0.013 3.987 23 H 0.264 0.736 24 H 0.033 0.967 25 H 0.016 0.984 26 H 0.036 0.964 27 H 0.050 0.950 28 H 0.395 0.605 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.392 0.608 32 H 0.082 0.918 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.055 0.945 39 H 0.034 0.966 40 H 0.059 0.941 41 H 0.005 0.995 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.573 -12.519 -8.842 17.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.123 4.123 3 Si 0.707 3.293 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.513 4.513 8 C -0.051 4.051 9 C -0.150 4.150 10 C 0.049 3.951 11 H 0.096 0.904 12 N -0.369 5.369 13 C 0.298 3.702 14 O -0.428 6.428 15 C -0.206 4.206 16 C 0.088 3.912 17 O -0.364 6.364 18 C -0.199 4.199 19 C -0.173 4.173 20 C -0.166 4.166 21 C -0.152 4.152 22 C -0.025 4.025 23 H 0.074 0.926 24 H 0.052 0.948 25 H 0.034 0.966 26 H 0.055 0.945 27 H 0.069 0.931 28 H 0.228 0.772 29 H 0.120 0.880 30 H 0.116 0.884 31 H 0.247 0.753 32 H 0.101 0.899 33 H 0.095 0.905 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.078 0.922 41 H 0.023 0.977 Dipole moment (debyes) X Y Z Total from point charges 9.194 -12.698 -8.515 17.840 hybrid contribution -0.290 1.402 -0.185 1.444 sum 8.904 -11.295 -8.700 16.809 Atomic orbital electron populations 1.69906 1.06291 1.26969 1.48874 1.24808 0.94544 0.98637 0.94331 0.86773 0.81137 0.83695 0.77731 1.18549 1.20972 1.21125 1.20000 0.92454 0.92310 1.46547 1.19723 0.96953 0.94428 0.93990 1.21875 0.97535 0.95422 1.00184 1.21091 0.97221 0.86118 0.90620 0.90384 1.46476 1.16720 1.39150 1.34510 1.20568 0.82150 0.82081 0.85417 1.90539 1.46078 1.66622 1.39596 1.22371 0.99825 0.98396 1.00020 1.21742 0.90638 0.94548 0.84225 1.86294 1.87648 1.47926 1.14514 1.23561 0.98198 0.96829 1.01295 1.22743 0.96210 0.97103 1.01212 1.23066 0.96894 0.99203 0.97463 1.21906 0.92288 0.98746 1.02211 1.19351 0.99367 0.92050 0.91738 0.92630 0.94833 0.96570 0.94541 0.93084 0.77153 0.88031 0.88358 0.75299 0.89915 0.90536 0.89917 0.91569 0.90636 0.89025 0.92618 0.94737 0.92208 0.97652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.84 12.81 55.43 0.71 -24.13 16 2 C 0.08 2.15 5.43 -17.82 -0.10 2.05 16 3 Si 0.88 20.74 27.63 -169.99 -4.70 16.04 16 4 H -0.26 -6.01 6.14 56.52 0.35 -5.67 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 7 C -0.49 -12.79 5.44 -98.93 -0.54 -13.32 16 8 C -0.01 -0.30 5.47 -27.48 -0.15 -0.45 16 9 C -0.11 -2.30 5.50 -26.63 -0.15 -2.44 16 10 C 0.15 2.88 2.35 -67.98 -0.16 2.72 16 11 H 0.08 1.64 7.58 -51.93 -0.39 1.25 16 12 N -0.72 -10.69 5.07 -53.85 -0.27 -10.97 16 13 C 0.51 7.50 7.54 -10.98 -0.08 7.42 16 14 O -0.55 -9.84 13.27 -14.25 -0.19 -10.02 16 15 C -0.17 -1.78 5.34 -27.88 -0.15 -1.93 16 16 C 0.13 1.55 1.10 -89.81 -0.10 1.45 16 17 O -0.55 -7.97 13.40 -55.04 -0.74 -8.71 16 18 C -0.16 -1.86 7.16 -25.92 -0.19 -2.05 16 19 C -0.14 -1.33 8.02 -25.92 -0.21 -1.54 16 20 C -0.13 -1.22 7.47 -25.92 -0.19 -1.41 16 21 C -0.11 -2.26 5.40 -26.63 -0.14 -2.40 16 22 C 0.01 0.31 5.99 -27.49 -0.16 0.15 16 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 24 H 0.03 0.79 5.02 -51.93 -0.26 0.52 16 25 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 26 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 27 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.40 4.74 8.60 -40.82 -0.35 4.39 16 29 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 30 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.39 5.92 6.18 45.56 0.28 6.21 16 32 H 0.08 0.87 8.03 -51.93 -0.42 0.45 16 33 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.09 0.67 8.10 -51.93 -0.42 0.25 16 38 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.57 7.11 -51.93 -0.37 1.20 16 41 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 LS Contribution 321.29 15.07 4.84 4.84 Total: -1.00 -29.24 321.29 -8.85 -38.09 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -6.19 Total: 6.60 kcal Atomic # 6 Polarization: -9.43 SS G_CDS: -2.32 Total: -11.75 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.44 Total: -35.10 kcal Atomic # 8 Polarization: -17.80 SS G_CDS: -0.93 Total: -18.73 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -4.70 Total: 16.04 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.24 -8.85 -38.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142622092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.502 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds