Wall clock time and date at job start Mon Mar 30 2020 01:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86803 * 119.99612 * 2 1 4 4 H 1.48494 * 109.47089 * 174.64075 * 3 2 1 5 5 H 1.48501 * 109.47247 * 294.63825 * 3 2 1 6 6 H 1.48500 * 109.47248 * 54.63583 * 3 2 1 7 7 C 1.37871 * 120.00390 * 179.97438 * 2 1 3 8 8 C 1.51272 * 120.84974 * 164.56552 * 7 2 1 9 9 C 1.53235 * 108.53542 * 231.32471 * 8 7 2 10 10 C 1.52953 * 109.40415 * 305.37254 * 9 8 7 11 11 H 1.08994 * 109.35917 * 303.52528 * 10 9 8 12 12 N 1.46499 * 109.41050 * 183.70226 * 10 9 8 13 13 C 1.34782 * 119.99843 * 84.65199 * 12 10 9 14 14 O 1.21279 * 120.00014 * 359.97438 * 13 12 10 15 15 C 1.50697 * 119.99749 * 180.02562 * 13 12 10 16 16 C 1.53003 * 109.46744 * 179.97438 * 15 13 12 17 17 O 1.42899 * 112.91240 * 53.74608 * 16 15 13 18 18 C 1.53779 * 113.61347 * 282.49097 * 16 15 13 19 19 C 1.53773 * 87.08572 * 220.01991 * 18 16 15 20 20 C 1.53783 * 113.61394 * 184.99795 * 16 15 13 21 21 C 1.52959 * 109.81907 * 63.60013 * 10 9 8 22 22 C 1.51265 * 120.84952 * 344.54449 * 7 2 1 23 23 H 0.96998 * 120.00210 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.62389 * 351.04010 * 8 7 2 25 25 H 1.08998 * 109.62465 * 111.61467 * 8 7 2 26 26 H 1.08998 * 109.47705 * 185.39132 * 9 8 7 27 27 H 1.08998 * 109.47837 * 65.35088 * 9 8 7 28 28 H 0.97000 * 120.00242 * 264.64022 * 12 10 9 29 29 H 1.08992 * 109.47573 * 59.99909 * 15 13 12 30 30 H 1.09003 * 109.47193 * 299.99240 * 15 13 12 31 31 H 0.96697 * 113.99551 * 311.25778 * 17 16 15 32 32 H 1.08996 * 113.61652 * 334.57573 * 18 16 15 33 33 H 1.09005 * 113.61244 * 105.47483 * 18 16 15 34 34 H 1.08997 * 113.62047 * 270.88942 * 19 18 16 35 35 H 1.09004 * 113.61698 * 139.98113 * 19 18 16 36 36 H 1.08999 * 113.61439 * 254.52884 * 20 16 15 37 37 H 1.09003 * 113.61358 * 25.43037 * 20 16 15 38 38 H 1.09006 * 109.48286 * 56.37672 * 21 10 9 39 39 H 1.08993 * 109.48639 * 176.40545 * 21 10 9 40 40 H 1.08999 * 109.62903 * 8.95502 * 22 7 2 41 41 H 1.09001 * 109.62376 * 248.38908 * 22 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7037 1.3496 0.1308 5 1 1.9911 2.3384 -1.2726 6 1 1.7948 2.4517 1.1417 7 6 2.0046 -1.1940 0.0005 8 6 3.4766 -1.2399 -0.3451 9 6 3.6904 -2.3054 -1.4253 10 6 3.1137 -3.6384 -0.9454 11 1 3.5748 -3.9106 0.0039 12 7 3.3960 -4.6770 -1.9394 13 6 4.5793 -5.3220 -1.9226 14 8 5.4105 -5.0424 -1.0849 15 6 4.8698 -6.3900 -2.9453 16 6 6.2701 -6.9580 -2.7058 17 8 6.4635 -7.4148 -1.3657 18 6 7.3997 -6.0472 -3.2152 19 6 8.1068 -7.3251 -3.6962 20 6 6.7141 -7.9727 -3.7727 21 6 1.6010 -3.5116 -0.7581 22 6 1.3086 -2.4914 0.3472 23 1 -0.4850 0.8400 -0.0004 24 1 3.7947 -0.2677 -0.7217 25 1 4.0533 -1.4982 0.5431 26 1 4.7572 -2.4190 -1.6178 27 1 3.1858 -2.0000 -2.3420 28 1 2.7312 -4.9005 -2.6094 29 1 4.8190 -5.9591 -3.9451 30 1 4.1333 -7.1886 -2.8560 31 1 6.1861 -6.7809 -0.6903 32 1 7.0949 -5.3852 -4.0257 33 1 7.9328 -5.5263 -2.4198 34 1 8.7563 -7.7740 -2.9448 35 1 8.5919 -7.2170 -4.6664 36 1 6.6936 -9.0064 -3.4274 37 1 6.2218 -7.8373 -4.7357 38 1 1.1459 -3.1776 -1.6907 39 1 1.1869 -4.4801 -0.4780 40 1 0.2338 -2.3235 0.4154 41 1 1.6846 -2.8655 1.2994 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142622092.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:16 Heat of formation + Delta-G solvation = -107.617386 kcal Electronic energy + Delta-G solvation = -20991.721726 eV Core-core repulsion = 17870.351407 eV Total energy + Delta-G solvation = -3121.370320 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -41.46301 -39.89160 -38.27770 -35.57960 -35.20332 -33.52725 -31.55481 -31.26465 -28.80146 -26.61357 -24.83449 -23.66855 -23.27383 -21.37792 -21.16399 -20.51923 -18.40102 -17.76294 -17.50557 -16.89036 -16.54981 -16.31984 -15.90922 -15.76711 -15.17212 -14.86269 -14.60268 -14.23638 -14.04411 -13.83328 -13.63999 -13.39520 -13.17276 -12.81420 -12.77742 -12.55172 -12.46794 -12.09807 -11.88038 -11.79773 -11.74368 -11.49883 -11.37008 -11.01694 -10.84095 -10.58116 -10.52746 -10.42069 -9.87705 -8.21454 -6.09167 1.35279 1.42461 1.51637 1.65387 2.26319 2.40587 3.06592 3.18827 3.58724 3.68515 3.77019 3.95009 4.03111 4.18880 4.29187 4.44555 4.49715 4.57991 4.71290 4.75658 4.82565 4.87017 4.87545 4.97036 5.06781 5.07150 5.15589 5.16918 5.23131 5.25577 5.36170 5.46833 5.54838 5.58251 5.68823 5.73713 5.83616 6.34736 6.64708 6.75258 6.93466 7.34626 7.46307 8.89629 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.039084 B = 0.004098 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.241950 B = 6830.477940 C = 7190.678236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.031 3.969 3 Si 0.929 3.071 4 H -0.253 1.253 5 H -0.279 1.279 6 H -0.287 1.287 7 C -0.505 4.505 8 C -0.015 4.015 9 C -0.103 4.103 10 C 0.165 3.835 11 H 0.056 0.944 12 N -0.711 5.711 13 C 0.508 3.492 14 O -0.584 6.584 15 C -0.153 4.153 16 C 0.111 3.889 17 O -0.569 6.569 18 C -0.167 4.167 19 C -0.133 4.133 20 C -0.116 4.116 21 C -0.100 4.100 22 C 0.007 3.993 23 H 0.264 0.736 24 H 0.032 0.968 25 H 0.009 0.991 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.413 0.587 29 H 0.134 0.866 30 H 0.121 0.879 31 H 0.385 0.615 32 H 0.097 0.903 33 H 0.046 0.954 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.055 0.945 39 H 0.057 0.943 40 H 0.032 0.968 41 H -0.001 1.001 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.245 -13.750 -11.169 19.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.168 4.168 3 Si 0.755 3.245 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.213 1.213 7 C -0.524 4.524 8 C -0.054 4.054 9 C -0.142 4.142 10 C 0.061 3.939 11 H 0.074 0.926 12 N -0.361 5.361 13 C 0.297 3.703 14 O -0.466 6.466 15 C -0.193 4.193 16 C 0.070 3.930 17 O -0.381 6.381 18 C -0.205 4.205 19 C -0.171 4.171 20 C -0.153 4.153 21 C -0.138 4.138 22 C -0.031 4.031 23 H 0.073 0.927 24 H 0.051 0.949 25 H 0.027 0.973 26 H 0.058 0.942 27 H 0.073 0.927 28 H 0.250 0.750 29 H 0.152 0.848 30 H 0.139 0.861 31 H 0.239 0.761 32 H 0.115 0.885 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.105 0.895 36 H 0.092 0.908 37 H 0.141 0.859 38 H 0.074 0.926 39 H 0.076 0.924 40 H 0.051 0.949 41 H 0.017 0.983 Dipole moment (debyes) X Y Z Total from point charges 9.873 -13.956 -10.874 20.261 hybrid contribution -0.466 1.743 0.589 1.898 sum 9.407 -12.213 -10.285 18.532 Atomic orbital electron populations 1.70007 1.07552 1.27540 1.50832 1.25498 0.95165 1.01499 0.94684 0.85960 0.80414 0.80426 0.77657 1.17722 1.20505 1.21306 1.20528 0.93672 0.92897 1.45278 1.19739 0.95338 0.95555 0.94731 1.21739 0.97919 0.95412 0.99125 1.20609 0.95922 0.86530 0.90854 0.92593 1.46189 1.17626 1.38205 1.34108 1.21324 0.81184 0.82271 0.85564 1.90542 1.47170 1.67698 1.41209 1.22392 0.99538 0.97457 0.99925 1.22136 0.91396 0.95917 0.83562 1.86283 1.87915 1.48085 1.15780 1.23621 0.98469 0.97474 1.00943 1.22727 0.96627 0.95946 1.01772 1.23113 0.96168 0.98286 0.97742 1.21670 0.93216 0.98503 1.00426 1.19325 0.97488 0.93150 0.93137 0.92690 0.94922 0.97303 0.94166 0.92736 0.75047 0.84789 0.86061 0.76122 0.88455 0.93475 0.91337 0.89463 0.90825 0.85879 0.92613 0.92402 0.94913 0.98312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -52.65 12.81 21.45 0.27 -52.38 16 2 C 0.03 1.67 5.43 84.65 0.46 2.13 16 3 Si 0.93 42.69 27.63 68.60 1.90 44.58 16 4 H -0.25 -11.18 6.14 99.48 0.61 -10.57 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 7 C -0.50 -26.23 5.44 -16.17 -0.09 -26.32 16 8 C -0.02 -0.72 5.47 30.11 0.16 -0.55 16 9 C -0.10 -4.12 5.50 30.66 0.17 -3.95 16 10 C 0.17 6.05 2.35 44.96 0.11 6.15 16 11 H 0.06 2.33 7.58 -2.39 -0.02 2.31 16 12 N -0.71 -19.25 5.07 -442.68 -2.25 -21.50 16 13 C 0.51 13.75 7.54 87.66 0.66 14.41 16 14 O -0.58 -20.56 13.27 15.92 0.21 -20.35 16 15 C -0.15 -2.71 5.34 29.85 0.16 -2.55 16 16 C 0.11 2.38 1.10 -10.27 -0.01 2.37 16 17 O -0.57 -16.08 13.40 -130.04 -1.74 -17.82 16 18 C -0.17 -3.58 7.16 31.12 0.22 -3.35 16 19 C -0.13 -2.31 8.02 31.12 0.25 -2.07 16 20 C -0.12 -1.78 7.47 31.12 0.23 -1.55 16 21 C -0.10 -3.87 5.40 30.66 0.17 -3.70 16 22 C 0.01 0.34 5.99 30.11 0.18 0.52 16 23 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 24 H 0.03 1.50 5.02 -2.39 -0.01 1.48 16 25 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.41 8.38 8.60 -92.71 -0.80 7.59 16 29 H 0.13 1.56 8.05 -2.39 -0.02 1.54 16 30 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 31 H 0.38 11.76 6.18 -74.06 -0.46 11.31 16 32 H 0.10 1.76 8.03 -2.39 -0.02 1.74 16 33 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.09 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.12 1.14 8.10 -2.39 -0.02 1.12 16 38 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 39 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.03 1.75 7.11 -2.39 -0.02 1.73 16 41 H 0.00 -0.07 8.14 -2.39 -0.02 -0.09 16 Total: -1.00 -64.55 321.29 0.74 -63.80 By element: Atomic # 1 Polarization: 22.44 SS G_CDS: -0.32 Total: 22.12 kcal Atomic # 6 Polarization: -21.14 SS G_CDS: 2.67 Total: -18.47 kcal Atomic # 7 Polarization: -71.90 SS G_CDS: -1.97 Total: -73.87 kcal Atomic # 8 Polarization: -36.64 SS G_CDS: -1.53 Total: -38.17 kcal Atomic # 14 Polarization: 42.69 SS G_CDS: 1.90 Total: 44.58 kcal Total: -64.55 0.74 -63.80 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142622092.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.813 kcal (2) G-P(sol) polarization free energy of solvation -64.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds