Wall clock time and date at job start Mon Mar 30 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48502 * 109.47108 * 270.00040 * 3 2 1 5 5 H 1.48503 * 109.47242 * 29.99967 * 3 2 1 6 6 H 1.48500 * 109.47258 * 150.00125 * 3 2 1 7 7 C 1.37879 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47089 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99726 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00217 * 180.02562 * 10 9 7 13 13 C 1.46922 * 120.63299 * 180.02562 * 12 10 9 14 14 C 1.53200 * 108.77452 * 233.62806 * 13 12 10 15 15 C 1.53036 * 109.31013 * 305.36220 * 14 13 12 16 16 O 1.42899 * 109.45696 * 181.38543 * 15 14 13 17 17 C 1.42902 * 113.99903 * 150.00169 * 16 15 14 18 18 C 1.53786 * 113.61284 * 209.99760 * 17 16 15 19 19 C 1.53781 * 87.17350 * 220.06071 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 19 18 17 21 21 C 1.53040 * 109.53992 * 61.36686 * 15 14 13 22 22 C 1.46926 * 120.62887 * 0.02562 * 12 10 9 23 23 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47200 * 60.00630 * 9 7 2 25 25 H 1.08993 * 109.47438 * 300.00424 * 9 7 2 26 26 H 1.08995 * 109.59167 * 113.83916 * 13 12 10 27 27 H 1.09006 * 109.70097 * 353.48056 * 13 12 10 28 28 H 1.09000 * 109.49453 * 185.41031 * 14 13 12 29 29 H 1.09003 * 109.49599 * 65.31387 * 14 13 12 30 30 H 1.08999 * 109.46357 * 301.35618 * 15 14 13 31 31 H 1.08993 * 112.90736 * 341.24804 * 17 16 15 32 32 H 1.09002 * 113.61357 * 105.46987 * 18 17 16 33 33 H 1.09002 * 113.61608 * 334.65149 * 18 17 16 34 34 H 1.09001 * 113.61695 * 139.93969 * 19 18 17 35 35 H 1.08997 * 113.61223 * 270.84552 * 19 18 17 36 36 H 1.08997 * 113.61668 * 89.11298 * 20 19 18 37 37 H 1.08998 * 113.61674 * 219.93807 * 20 19 18 38 38 H 1.09004 * 109.49875 * 58.58423 * 21 15 14 39 39 H 1.08997 * 109.49829 * 178.67902 * 21 15 14 40 40 H 1.09005 * 109.58433 * 246.15835 * 22 12 10 41 41 H 1.09006 * 109.58762 * 6.43871 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7235 -6.0425 -0.0005 14 6 2.3807 -6.9723 -1.1688 15 6 0.9095 -7.3830 -1.0739 16 8 0.5947 -8.2761 -2.1440 17 6 -0.4322 -9.2193 -1.8308 18 6 -0.2919 -10.5544 -2.5811 19 6 -1.8202 -10.5327 -2.7501 20 6 -1.7336 -9.0024 -2.6244 21 6 0.0235 -6.1389 -1.1708 22 6 0.3396 -5.1996 -0.0022 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.6388 -6.5892 0.9386 27 1 3.7415 -5.6704 -0.1162 28 1 3.0102 -7.8610 -1.1232 29 1 2.5531 -6.4516 -2.1108 30 1 0.7323 -7.8814 -0.1209 31 1 -0.5888 -9.3355 -0.7585 32 1 0.0666 -11.3715 -1.9550 33 1 0.2527 -10.4716 -3.5217 34 1 -2.1561 -10.8719 -3.7301 35 1 -2.3571 -11.0084 -1.9295 36 1 -1.5831 -8.4939 -3.5766 37 1 -2.5397 -8.5664 -2.0344 38 1 0.2181 -5.6261 -2.1128 39 1 -1.0247 -6.4344 -1.1267 40 1 0.0608 -5.6777 0.9369 41 1 -0.2163 -4.2691 -0.1177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143194108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:08 Heat of formation + Delta-G solvation = -72.858469 kcal Electronic energy + Delta-G solvation = -20633.658188 eV Core-core repulsion = 17513.795128 eV Total energy + Delta-G solvation = -3119.863060 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 3.23 seconds Orbital eigenvalues (eV) -39.91143 -39.03292 -37.14116 -35.24136 -32.99196 -31.59146 -30.90534 -28.69769 -25.88105 -25.45447 -24.28844 -23.52618 -22.60936 -20.77501 -19.80319 -18.45730 -17.35446 -16.53546 -15.93435 -15.61657 -15.29426 -14.88003 -14.76254 -14.48912 -14.31472 -13.75087 -13.21470 -12.84195 -12.68610 -12.65309 -12.51163 -12.13725 -11.99759 -11.59081 -11.43862 -11.32825 -11.17863 -11.10905 -10.74537 -10.67031 -10.61124 -10.58897 -10.35786 -9.93573 -9.45434 -9.17913 -8.61074 -8.42942 -8.12865 -6.05134 -4.04367 3.35753 3.40827 3.46856 3.49597 3.62806 3.75857 4.35975 4.39943 4.49017 4.62461 4.64686 4.78829 4.89992 5.08151 5.11355 5.20877 5.33179 5.41658 5.42047 5.52489 5.54897 5.59931 5.65132 5.70571 5.79746 5.84188 5.94360 5.96437 6.03140 6.07685 6.19017 6.34192 6.37758 7.02904 7.21018 7.25267 7.32281 7.96572 7.98799 8.37956 9.06217 9.20691 9.60645 11.07285 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035796 B = 0.003705 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.023614 B = 7554.557073 C = 8103.868571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.055 3.945 3 Si 0.901 3.099 4 H -0.280 1.280 5 H -0.287 1.287 6 H -0.272 1.272 7 C -0.508 4.508 8 H 0.075 0.925 9 C 0.007 3.993 10 C 0.518 3.482 11 O -0.545 6.545 12 N -0.630 5.630 13 C 0.114 3.886 14 C -0.129 4.129 15 C 0.093 3.907 16 O -0.367 6.367 17 C 0.062 3.938 18 C -0.139 4.139 19 C -0.143 4.143 20 C -0.157 4.157 21 C -0.154 4.154 22 C 0.113 3.887 23 H 0.261 0.739 24 H 0.048 0.952 25 H 0.047 0.953 26 H 0.057 0.943 27 H 0.094 0.906 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.085 0.915 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.060 0.940 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.728 -21.001 -2.554 21.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.146 4.146 3 Si 0.729 3.271 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.197 1.197 7 C -0.546 4.546 8 H 0.093 0.907 9 C -0.032 4.032 10 C 0.310 3.690 11 O -0.421 6.421 12 N -0.367 5.367 13 C -0.010 4.010 14 C -0.168 4.168 15 C 0.035 3.965 16 O -0.286 6.286 17 C 0.004 3.996 18 C -0.176 4.176 19 C -0.180 4.180 20 C -0.195 4.195 21 C -0.193 4.193 22 C -0.011 4.011 23 H 0.071 0.929 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.076 0.924 27 H 0.112 0.888 28 H 0.093 0.907 29 H 0.093 0.907 30 H 0.077 0.923 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.078 0.922 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.118 -20.715 -2.720 21.295 hybrid contribution 0.036 0.770 0.190 0.794 sum -4.082 -19.945 -2.530 20.515 Atomic orbital electron populations 1.69955 1.06023 1.26894 1.51238 1.25002 0.94915 0.99459 0.95209 0.86432 0.79864 0.82644 0.78176 1.20607 1.21272 1.19671 1.21189 0.94276 0.89164 1.50012 0.90723 1.19247 0.94166 0.90524 0.99246 1.22057 0.90964 0.83134 0.72851 1.90523 1.18090 1.84049 1.49402 1.48419 1.06071 1.06024 1.76191 1.21384 0.95748 0.87325 0.96517 1.22004 0.94565 0.99727 1.00474 1.22192 0.95110 0.89765 0.89435 1.87981 1.55706 1.46168 1.38753 1.23809 0.88109 0.89502 0.98150 1.23219 0.96528 0.96361 1.01531 1.22659 0.96332 0.96739 1.02318 1.23522 0.97775 0.96356 1.01828 1.22462 0.99707 0.96562 1.00561 1.21620 0.81938 1.00546 0.96957 0.92920 0.93452 0.93510 0.92441 0.88764 0.90705 0.90695 0.92284 0.89724 0.91267 0.89259 0.90902 0.90127 0.89241 0.91302 0.90499 0.90924 0.92205 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.42 13.29 55.43 0.74 -25.68 16 2 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 3 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.51 -14.89 8.92 -34.44 -0.31 -15.20 16 8 H 0.07 2.29 6.75 -52.49 -0.35 1.93 16 9 C 0.01 0.19 3.81 -29.03 -0.11 0.07 16 10 C 0.52 12.10 7.69 -10.99 -0.08 12.01 16 11 O -0.54 -14.45 14.88 5.55 0.08 -14.36 16 12 N -0.63 -11.35 2.97 -172.74 -0.51 -11.86 16 13 C 0.11 1.71 6.43 -3.71 -0.02 1.69 16 14 C -0.13 -1.68 5.73 -26.61 -0.15 -1.83 16 15 C 0.09 1.11 2.56 -26.69 -0.07 1.04 16 16 O -0.37 -4.50 10.00 -35.23 -0.35 -4.85 16 17 C 0.06 0.59 4.27 -25.82 -0.11 0.48 16 18 C -0.14 -1.14 7.91 -25.92 -0.20 -1.34 16 19 C -0.14 -1.03 8.08 -25.92 -0.21 -1.23 16 20 C -0.16 -1.37 7.92 -25.82 -0.20 -1.57 16 21 C -0.15 -1.98 5.70 -26.60 -0.15 -2.14 16 22 C 0.11 1.67 6.34 -3.70 -0.02 1.64 16 23 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 24 H 0.05 1.23 7.69 -51.93 -0.40 0.83 16 25 H 0.05 1.21 7.94 -51.93 -0.41 0.79 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.09 1.59 7.01 -51.93 -0.36 1.22 16 28 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.06 0.63 7.42 -51.93 -0.39 0.25 16 31 H 0.08 0.72 7.46 -51.93 -0.39 0.33 16 32 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 39 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.10 1.62 5.93 -51.93 -0.31 1.31 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -32.44 329.04 -8.68 -41.12 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -6.82 Total: -1.69 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -1.75 Total: -4.89 kcal Atomic # 7 Polarization: -37.77 SS G_CDS: 0.22 Total: -37.55 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -0.27 Total: -19.21 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.44 -8.68 -41.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.743 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.23 seconds