Wall clock time and date at job start Mon Mar 30 2020 01:09:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 119.99934 * 2 1 4 4 H 1.48502 * 109.47108 * 270.00040 * 3 2 1 5 5 H 1.48503 * 109.47242 * 29.99967 * 3 2 1 6 6 H 1.48500 * 109.47258 * 150.00125 * 3 2 1 7 7 C 1.37879 * 119.99867 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99823 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99988 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47089 * 180.02562 * 9 7 2 11 11 O 1.21284 * 119.99726 * 359.97438 * 10 9 7 12 12 N 1.34770 * 120.00217 * 180.02562 * 10 9 7 13 13 C 1.46922 * 120.63299 * 180.02562 * 12 10 9 14 14 C 1.53200 * 108.77452 * 233.62806 * 13 12 10 15 15 C 1.53036 * 109.31013 * 305.36220 * 14 13 12 16 16 O 1.42899 * 109.45696 * 181.38543 * 15 14 13 17 17 C 1.42902 * 113.99903 * 150.00169 * 16 15 14 18 18 C 1.53786 * 113.61284 * 209.99760 * 17 16 15 19 19 C 1.53781 * 87.17350 * 220.06071 * 18 17 16 20 20 C 1.53782 * 87.08260 * 25.39213 * 19 18 17 21 21 C 1.53040 * 109.53992 * 61.36686 * 15 14 13 22 22 C 1.46926 * 120.62887 * 0.02562 * 12 10 9 23 23 H 0.97001 * 120.00021 * 0.02562 * 1 2 3 24 24 H 1.09000 * 109.47200 * 60.00630 * 9 7 2 25 25 H 1.08993 * 109.47438 * 300.00424 * 9 7 2 26 26 H 1.08995 * 109.59167 * 113.83916 * 13 12 10 27 27 H 1.09006 * 109.70097 * 353.48056 * 13 12 10 28 28 H 1.09000 * 109.49453 * 185.41031 * 14 13 12 29 29 H 1.09003 * 109.49599 * 65.31387 * 14 13 12 30 30 H 1.08999 * 109.46357 * 301.35618 * 15 14 13 31 31 H 1.08993 * 112.90736 * 341.24804 * 17 16 15 32 32 H 1.09002 * 113.61357 * 105.46987 * 18 17 16 33 33 H 1.09002 * 113.61608 * 334.65149 * 18 17 16 34 34 H 1.09001 * 113.61695 * 139.93969 * 19 18 17 35 35 H 1.08997 * 113.61223 * 270.84552 * 19 18 17 36 36 H 1.08997 * 113.61668 * 89.11298 * 20 19 18 37 37 H 1.08998 * 113.61674 * 219.93807 * 20 19 18 38 38 H 1.09004 * 109.49875 * 58.58423 * 21 15 14 39 39 H 1.08997 * 109.49829 * 178.67902 * 21 15 14 40 40 H 1.09005 * 109.58433 * 246.15835 * 22 12 10 41 41 H 1.09006 * 109.58762 * 6.43871 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 8 3.4227 -3.4230 -0.0010 12 7 1.7811 -4.9153 -0.0011 13 6 2.7235 -6.0425 -0.0005 14 6 2.3807 -6.9723 -1.1688 15 6 0.9095 -7.3830 -1.0739 16 8 0.5947 -8.2761 -2.1440 17 6 -0.4322 -9.2193 -1.8308 18 6 -0.2919 -10.5544 -2.5811 19 6 -1.8202 -10.5327 -2.7501 20 6 -1.7336 -9.0024 -2.6244 21 6 0.0235 -6.1389 -1.1708 22 6 0.3396 -5.1996 -0.0022 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5568 -0.8903 25 1 0.6247 -2.5571 0.8896 26 1 2.6388 -6.5892 0.9386 27 1 3.7415 -5.6704 -0.1162 28 1 3.0102 -7.8610 -1.1232 29 1 2.5531 -6.4516 -2.1108 30 1 0.7323 -7.8814 -0.1209 31 1 -0.5888 -9.3355 -0.7585 32 1 0.0666 -11.3715 -1.9550 33 1 0.2527 -10.4716 -3.5217 34 1 -2.1561 -10.8719 -3.7301 35 1 -2.3571 -11.0084 -1.9295 36 1 -1.5831 -8.4939 -3.5766 37 1 -2.5397 -8.5664 -2.0344 38 1 0.2181 -5.6261 -2.1128 39 1 -1.0247 -6.4344 -1.1267 40 1 0.0608 -5.6777 0.9369 41 1 -0.2163 -4.2691 -0.1177 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143194108.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:08 Heat of formation + Delta-G solvation = -92.690105 kcal Electronic energy + Delta-G solvation = -20634.518153 eV Core-core repulsion = 17513.795128 eV Total energy + Delta-G solvation = -3120.723024 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.15920 -40.14033 -38.37544 -36.40068 -35.16037 -32.96665 -32.12681 -30.65945 -26.70153 -26.50878 -25.59961 -24.85923 -23.96180 -21.96901 -20.60567 -19.84637 -18.69563 -18.16326 -17.53152 -16.99315 -16.48256 -16.27384 -16.15968 -15.82936 -15.41216 -14.92214 -14.64973 -14.32966 -14.09973 -13.84593 -13.48184 -13.32246 -13.26427 -13.16413 -12.77888 -12.59964 -12.55149 -12.30038 -12.25218 -12.13443 -11.99212 -11.48678 -11.47520 -11.30696 -11.18356 -10.63734 -10.51648 -10.24685 -9.61555 -8.26418 -6.33835 1.39131 1.40066 1.52735 1.82469 2.14053 2.43274 2.72127 3.08610 3.66555 3.68556 3.78965 3.84099 3.99837 4.00789 4.07812 4.11634 4.23615 4.29797 4.39470 4.48842 4.64194 4.71095 4.82134 4.86361 4.86788 4.89654 4.96795 5.04956 5.07402 5.08478 5.10600 5.22106 5.26037 5.30260 5.47212 5.63227 5.76936 6.04113 6.43454 6.51285 6.79108 7.32004 7.43970 8.85693 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.035796 B = 0.003705 C = 0.003454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.023614 B = 7554.557073 C = 8103.868571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.011 3.989 3 Si 0.964 3.036 4 H -0.272 1.272 5 H -0.271 1.271 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.053 0.947 9 C 0.015 3.985 10 C 0.516 3.484 11 O -0.586 6.586 12 N -0.621 5.621 13 C 0.112 3.888 14 C -0.122 4.122 15 C 0.098 3.902 16 O -0.385 6.385 17 C 0.052 3.948 18 C -0.139 4.139 19 C -0.134 4.134 20 C -0.162 4.162 21 C -0.146 4.146 22 C 0.108 3.892 23 H 0.268 0.732 24 H 0.038 0.962 25 H 0.042 0.958 26 H 0.090 0.910 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.049 0.951 30 H 0.086 0.914 31 H 0.103 0.897 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.051 0.949 39 H 0.096 0.904 40 H 0.093 0.907 41 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -22.672 -1.886 23.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.789 3.211 4 H -0.197 1.197 5 H -0.196 1.196 6 H -0.199 1.199 7 C -0.578 4.578 8 H 0.071 0.929 9 C -0.024 4.024 10 C 0.307 3.693 11 O -0.467 6.467 12 N -0.355 5.355 13 C -0.011 4.011 14 C -0.160 4.160 15 C 0.040 3.960 16 O -0.304 6.304 17 C -0.006 4.006 18 C -0.177 4.177 19 C -0.171 4.171 20 C -0.200 4.200 21 C -0.185 4.185 22 C -0.014 4.014 23 H 0.077 0.923 24 H 0.056 0.944 25 H 0.060 0.940 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.117 0.883 29 H 0.068 0.932 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.069 0.931 39 H 0.114 0.886 40 H 0.112 0.888 41 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -5.062 -22.441 -2.060 23.097 hybrid contribution 0.247 1.201 -0.039 1.227 sum -4.815 -21.240 -2.100 21.880 Atomic orbital electron populations 1.70023 1.07065 1.28124 1.51029 1.25781 0.95883 1.02680 0.94388 0.85464 0.78507 0.78599 0.78579 1.19730 1.19626 1.19943 1.21391 0.93639 0.91399 1.51375 0.92886 1.19031 0.94170 0.90807 0.98432 1.21561 0.89771 0.84627 0.73303 1.90492 1.19249 1.85086 1.51830 1.48347 1.08188 1.05045 1.73922 1.21599 0.93887 0.86511 0.99068 1.21915 0.96270 0.99725 0.98125 1.22111 0.93672 0.89511 0.90689 1.87975 1.56690 1.46621 1.39110 1.24124 0.87630 0.89416 0.99384 1.23219 0.97244 0.96119 1.01090 1.22661 0.95720 0.95469 1.03253 1.23526 0.97768 0.97572 1.01122 1.22389 1.01441 0.96419 0.98238 1.21853 0.79516 1.00541 0.99512 0.92326 0.94399 0.93983 0.89164 0.90962 0.88304 0.93185 0.89640 0.87970 0.89961 0.90400 0.90478 0.88523 0.90817 0.90634 0.93057 0.88590 0.88841 0.90091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.38 13.29 21.45 0.28 -54.10 16 2 C 0.01 0.67 5.46 84.65 0.46 1.13 16 3 Si 0.96 45.96 29.54 68.60 2.03 47.99 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.85 16 5 H -0.27 -12.19 7.11 99.48 0.71 -11.49 16 6 H -0.27 -13.12 7.11 99.48 0.71 -12.41 16 7 C -0.54 -32.65 8.92 25.60 0.23 -32.42 16 8 H 0.05 3.38 6.75 -2.91 -0.02 3.36 16 9 C 0.01 0.79 3.81 29.10 0.11 0.90 16 10 C 0.52 24.85 7.69 87.66 0.67 25.52 16 11 O -0.59 -32.34 14.88 -3.04 -0.05 -32.38 16 12 N -0.62 -22.21 2.97 -818.83 -2.43 -24.64 16 13 C 0.11 3.23 6.43 86.37 0.56 3.79 16 14 C -0.12 -2.99 5.73 30.67 0.18 -2.81 16 15 C 0.10 2.10 2.56 30.62 0.08 2.17 16 16 O -0.38 -8.63 10.00 -148.98 -1.49 -10.12 16 17 C 0.05 0.84 4.27 31.18 0.13 0.98 16 18 C -0.14 -1.94 7.91 31.12 0.25 -1.70 16 19 C -0.13 -1.57 8.08 31.12 0.25 -1.32 16 20 C -0.16 -2.49 7.92 31.18 0.25 -2.25 16 21 C -0.15 -3.54 5.70 30.68 0.17 -3.36 16 22 C 0.11 3.06 6.34 86.37 0.55 3.60 16 23 H 0.27 14.75 8.31 -92.71 -0.77 13.98 16 24 H 0.04 2.05 7.69 -2.39 -0.02 2.04 16 25 H 0.04 2.24 7.94 -2.39 -0.02 2.22 16 26 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 27 H 0.07 2.45 7.01 -2.38 -0.02 2.43 16 28 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.43 7.42 -2.39 -0.02 1.42 16 31 H 0.10 1.31 7.46 -2.39 -0.02 1.29 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.05 1.50 8.14 -2.38 -0.02 1.49 16 39 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 40 H 0.09 2.08 8.14 -2.38 -0.02 2.06 16 41 H 0.08 2.63 5.93 -2.38 -0.01 2.61 16 Total: -1.00 -71.55 329.04 3.22 -68.33 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.99 Total: 10.68 kcal Atomic # 6 Polarization: -9.65 SS G_CDS: 3.89 Total: -5.77 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -2.15 Total: -78.74 kcal Atomic # 8 Polarization: -40.96 SS G_CDS: -1.54 Total: -42.50 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -71.55 3.22 -68.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143194108.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.361 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.330 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds