Wall clock time and date at job start Mon Mar 30 2020 01:09:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86797 * 119.99655 * 2 1 4 4 H 1.48502 * 109.47178 * 269.99447 * 3 2 1 5 5 H 1.48493 * 109.47386 * 30.00124 * 3 2 1 6 6 H 1.48501 * 109.46802 * 149.99834 * 3 2 1 7 7 C 1.37876 * 120.00163 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99811 * 0.02562 * 7 2 1 9 9 C 1.50696 * 119.99995 * 180.02562 * 7 2 1 10 10 C 1.50699 * 109.47217 * 179.97438 * 9 7 2 11 11 O 1.21288 * 119.99989 * 5.15042 * 10 9 7 12 12 N 1.34777 * 120.00400 * 185.14731 * 10 9 7 13 13 C 1.46504 * 119.99634 * 4.14974 * 12 10 9 14 14 C 1.53782 * 113.61637 * 125.91656 * 13 12 10 15 15 C 1.53773 * 87.17485 * 139.93629 * 14 13 12 16 16 C 1.53778 * 113.61454 * 223.41227 * 13 12 10 17 17 C 1.46494 * 120.00455 * 184.14467 * 12 10 9 18 18 C 1.53178 * 109.54473 * 59.82271 * 17 12 10 19 19 C 1.53101 * 109.16075 * 183.24086 * 18 17 12 20 20 O 1.42906 * 109.48419 * 57.47829 * 19 18 17 21 21 C 1.42908 * 114.09557 * 298.88728 * 20 19 18 22 22 C 1.53094 * 109.41449 * 61.16196 * 21 20 19 23 23 H 0.96991 * 120.00230 * 0.02562 * 1 2 3 24 24 H 1.08998 * 109.46970 * 60.00543 * 9 7 2 25 25 H 1.08997 * 109.47407 * 300.00245 * 9 7 2 26 26 H 1.08998 * 112.85025 * 354.71882 * 13 12 10 27 27 H 1.08999 * 113.61355 * 254.53323 * 14 13 12 28 28 H 1.09004 * 113.60986 * 25.34656 * 14 13 12 29 29 H 1.08998 * 113.61600 * 89.15628 * 15 14 13 30 30 H 1.08997 * 113.61836 * 220.05827 * 15 14 13 31 31 H 1.09007 * 113.61389 * 334.56773 * 16 13 12 32 32 H 1.09004 * 113.61480 * 105.37919 * 16 13 12 33 33 H 1.09001 * 109.54715 * 180.02562 * 17 12 10 34 34 H 1.09003 * 109.52159 * 303.06305 * 18 17 12 35 35 H 1.09003 * 109.52054 * 63.24811 * 18 17 12 36 36 H 1.08997 * 109.40750 * 297.49852 * 19 18 17 37 37 H 1.08995 * 109.49423 * 177.50791 * 19 18 17 38 38 H 1.08994 * 109.48179 * 301.17576 * 21 20 19 39 39 H 1.09004 * 109.48437 * 181.14849 * 21 20 19 40 40 H 1.08995 * 109.51934 * 182.48426 * 22 21 20 41 41 H 1.08998 * 109.57417 * 62.32918 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5115 -1.1940 0.0011 10 6 4.0139 -2.6148 0.0023 11 8 3.2298 -3.5353 -0.0917 12 7 5.3345 -2.8626 0.1077 13 6 6.2732 -1.7566 0.3124 14 6 7.1857 -1.9416 1.5363 15 6 8.3242 -1.3629 0.6798 16 6 7.5421 -1.8578 -0.5504 17 6 5.8313 -4.2378 0.0176 18 6 5.4482 -4.8331 -1.3408 19 6 5.9002 -6.2949 -1.3942 20 8 5.3050 -7.0176 -0.3146 21 6 5.6672 -6.5345 0.9807 22 6 5.2040 -5.0831 1.1304 23 1 -0.4850 0.8399 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 5.7918 -0.7795 0.2704 27 1 6.9131 -1.3120 2.3833 28 1 7.3360 -2.9846 1.8152 29 1 8.4057 -0.2775 0.7376 30 1 9.2791 -1.8682 0.8236 31 1 7.7910 -2.8780 -0.8430 32 1 7.5565 -1.1616 -1.3891 33 1 6.9160 -4.2414 0.1249 34 1 4.3669 -4.7825 -1.4688 35 1 5.9368 -4.2701 -2.1360 36 1 6.9857 -6.3417 -1.3083 37 1 5.5911 -6.7368 -2.3414 38 1 6.7497 -6.5845 1.0977 39 1 5.1903 -7.1490 1.7444 40 1 5.5180 -4.6988 2.1008 41 1 4.1176 -5.0368 1.0546 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143198570.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:06 Heat of formation + Delta-G solvation = -62.134947 kcal Electronic energy + Delta-G solvation = -21782.167003 eV Core-core repulsion = 18662.768950 eV Total energy + Delta-G solvation = -3119.398053 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 267.162 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.47692 -38.55299 -37.71888 -34.29106 -32.88726 -31.70139 -31.00158 -29.35670 -25.69300 -25.19244 -24.68305 -23.40299 -22.61606 -20.66516 -19.69415 -18.14020 -17.03220 -16.62757 -16.07502 -15.98465 -15.43288 -14.80679 -14.56164 -14.47514 -14.15731 -13.67132 -13.61920 -13.38442 -12.58861 -12.55388 -12.45080 -12.18131 -12.06467 -11.67429 -11.61576 -11.06551 -11.05054 -10.84911 -10.77729 -10.49545 -10.45773 -10.45232 -10.20751 -9.98074 -9.59485 -9.22079 -8.58932 -8.51074 -8.14783 -6.03538 -4.02922 3.24325 3.29569 3.32764 3.41825 3.51407 3.97171 4.39458 4.54141 4.60154 4.81084 4.81729 4.84524 5.01521 5.13747 5.20695 5.26366 5.30946 5.41466 5.45822 5.57177 5.62232 5.65558 5.68337 5.72781 5.80255 5.86855 5.94382 6.02253 6.03789 6.18124 6.35890 6.48229 6.52196 6.63543 6.89999 7.12086 7.26583 7.54683 8.03694 8.55152 9.09701 9.17519 9.55057 11.09568 Molecular weight = 267.16amu Principal moments of inertia in cm(-1) A = 0.018501 B = 0.006772 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.051976 B = 4133.463617 C = 5178.973211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.069 3.931 3 Si 0.872 3.128 4 H -0.276 1.276 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.092 0.908 9 C -0.029 4.029 10 C 0.525 3.475 11 O -0.520 6.520 12 N -0.616 5.616 13 C 0.120 3.880 14 C -0.155 4.155 15 C -0.139 4.139 16 C -0.154 4.154 17 C 0.156 3.844 18 C -0.174 4.174 19 C 0.069 3.931 20 O -0.381 6.381 21 C 0.068 3.932 22 C -0.177 4.177 23 H 0.264 0.736 24 H 0.042 0.958 25 H 0.040 0.960 26 H 0.119 0.881 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.092 0.908 38 H 0.043 0.957 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.563 -6.036 0.758 20.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.132 4.132 3 Si 0.699 3.301 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.110 0.890 9 C -0.068 4.068 10 C 0.316 3.684 11 O -0.394 6.394 12 N -0.349 5.349 13 C 0.015 3.985 14 C -0.193 4.193 15 C -0.177 4.177 16 C -0.193 4.193 17 C 0.052 3.948 18 C -0.213 4.213 19 C -0.009 4.009 20 O -0.300 6.300 21 C -0.009 4.009 22 C -0.215 4.215 23 H 0.074 0.926 24 H 0.060 0.940 25 H 0.058 0.942 26 H 0.136 0.864 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.116 0.884 35 H 0.087 0.913 36 H 0.062 0.938 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.110 0.890 40 H 0.086 0.914 41 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 18.794 -6.562 0.677 19.918 hybrid contribution 0.714 1.402 0.064 1.574 sum 19.508 -5.160 0.741 20.192 Atomic orbital electron populations 1.69891 1.06146 1.26774 1.50732 1.24972 0.94772 0.98652 0.94848 0.86917 0.80328 0.84258 0.78551 1.20143 1.21082 1.19197 1.21010 0.87706 0.95675 1.50535 0.88966 1.19706 0.99559 0.89466 0.98084 1.21385 0.79949 0.93401 0.73697 1.90533 1.54719 1.46704 1.47449 1.48257 1.06934 1.05436 1.74306 1.22696 0.88418 0.91976 0.95431 1.23442 0.96291 1.01694 0.97922 1.22715 0.97418 1.00982 0.96590 1.23475 0.96204 1.01978 0.97621 1.20780 0.97391 0.81926 0.94692 1.22651 1.05469 0.95884 0.97293 1.22498 0.96153 0.91583 0.90622 1.87934 1.71815 1.56088 1.14144 1.22517 0.98388 0.94658 0.85340 1.22716 1.05517 0.94846 0.98457 0.92613 0.94027 0.94172 0.86354 0.90981 0.89962 0.89914 0.91289 0.89852 0.90973 0.90479 0.88396 0.91257 0.93815 0.88948 0.93867 0.88964 0.91381 0.87799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.96 13.96 55.43 0.77 -27.18 16 2 C 0.07 2.01 5.47 -17.82 -0.10 1.92 16 3 Si 0.87 20.89 27.47 -169.99 -4.67 16.22 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 6 H -0.27 -5.90 6.54 56.52 0.37 -5.53 16 7 C -0.51 -14.99 9.47 -34.44 -0.33 -15.32 16 8 H 0.09 3.07 7.01 -52.48 -0.37 2.70 16 9 C -0.03 -0.68 2.94 -29.04 -0.09 -0.76 16 10 C 0.52 11.48 7.06 -10.99 -0.08 11.40 16 11 O -0.52 -13.08 11.65 5.55 0.06 -13.02 16 12 N -0.62 -10.23 2.64 -157.46 -0.42 -10.65 16 13 C 0.12 1.63 4.10 -67.12 -0.27 1.36 16 14 C -0.15 -1.73 7.55 -25.92 -0.20 -1.92 16 15 C -0.14 -1.29 8.10 -25.83 -0.21 -1.50 16 16 C -0.15 -1.65 7.49 -25.83 -0.19 -1.85 16 17 C 0.16 2.25 1.54 -67.75 -0.10 2.14 16 18 C -0.17 -2.57 5.39 -26.59 -0.14 -2.71 16 19 C 0.07 0.86 6.84 37.21 0.25 1.12 16 20 O -0.38 -5.64 10.77 -35.23 -0.38 -6.02 16 21 C 0.07 0.86 6.84 37.21 0.25 1.12 16 22 C -0.18 -2.65 5.39 -26.59 -0.14 -2.79 16 23 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 24 H 0.04 0.94 6.53 -51.93 -0.34 0.60 16 25 H 0.04 0.91 7.52 -51.93 -0.39 0.52 16 26 H 0.12 1.74 6.13 -51.93 -0.32 1.42 16 27 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 0.89 7.09 -51.93 -0.37 0.53 16 29 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.86 6.39 -51.92 -0.33 0.53 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.08 0.92 5.68 -51.93 -0.29 0.63 16 34 H 0.10 1.85 6.24 -51.93 -0.32 1.53 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.10 2.00 5.95 -51.93 -0.31 1.69 16 LS Contribution 313.67 15.07 4.73 4.73 Total: -1.00 -33.15 313.67 -7.68 -40.83 By element: Atomic # 1 Polarization: 9.33 SS G_CDS: -6.44 Total: 2.89 kcal Atomic # 6 Polarization: -6.46 SS G_CDS: -1.34 Total: -7.80 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: 0.36 Total: -37.83 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.31 Total: -19.04 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.67 Total: 16.22 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -33.15 -7.68 -40.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143198570.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.305 kcal (2) G-P(sol) polarization free energy of solvation -33.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds